BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07990.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351886 jgi|Araly1|351886|fgenesh1_pg.C_scaffold_6002479 987 0.0
> Ahg351886 jgi|Araly1|351886|fgenesh1_pg.C_scaffold_6002479
Length=705
Score = 987 bits (534), Expect = 0.0
Identities = 653/708 (92%), Gaps = 18/708 (3%)
Strand=Plus/Plus
Query 200 ATGGGAGGCGAAGATGATAAAGATAAGAAATGGAATCCTCCACCACCGCAGCAGAAGCCG 259
||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||| ||
Sbjct 1 ATGGGAGGCGAAGATGAGAAAGATAAGAAATGGAATCCTCCGCCGCCGCCGCAGAAGGCG 60
Query 260 GACTCAAGGCCTT-GGGAAGTCCTCGCGGCTTT--TGTAATCTGCGCAACCGCTACTACT 316
|||| || || || ||||| ||||||| | ||| ||||||| |||||||||| || |||
Sbjct 61 GACTTAAAGCTTTGGGGAA-TCCTCGC-G-TTTACTGTAATCGGCGCAACCGCCACCACT 117
Query 317 TTCGCCGTTCATCAGCTGCGAAGAAATTTTGATTGGGTCTATACCCAGCTAACTAGAACA 376
|| |||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||
Sbjct 118 TTTGCCGTTCATCAGCTGCGAAGAAGTTTTGATTGGGTCTATACCCAGGTAGCTAGATCA 177
Query 377 CCGTC-G-GCGGGAA-GAG-G-AA-------CTTTCCGAACATCTTTTCAGGAGGAAGCA 424
| ||| | |||| || ||| | || ||||||||||| ||| |||||||||||||
Sbjct 178 CAGTCAGCGCGGAAAGGAGCGAAAGGCGGTTCTTTCCGAACAGCTTATCAGGAGGAAGCA 237
Query 425 TGGAGAAGGTACAATAAACGGATGCAAGAGGAGTATGAGGATGAGTTGGAGAGAGTGGCA 484
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 TGGAGAAGGTACAACAAACGGATGCAAGAGGAGTATGAGGATGAGTTGGAGAGAGTGGAA 297
Query 485 CGTATTAGGCGTATGCAAAGCGTTTTCAACAGAGAGAGGAATAAATTTAGAAGGGGCTAC 544
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 298 CGTATTAGGCGTATGCAAAGCGTTTTCAACAGAGAGAGAAATAAATTTAGGAGGGGCTAT 357
Query 545 GAGAACTGGACGGAAAATGATCCTGGTGCACAGCAATACCATCAGCAGTTTCAGCGACAT 604
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGAACTGGAAAGAAAATGATCCTGGTGCACAGCAATACCATCAGCAGTTTCAGCGACAT 417
Query 605 GATTGGTACTGGAAAACTGAGTCTTCGCATAGAAACCAAAGGACCAATCACCAGGAGCCT 664
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 418 GATTGGTACTGGAAAACTGAGTCTTCGCATAGAAACCAAAGAACTAATCACCAGGAGCCT 477
Query 665 TCAGACCAGAGAAGAGTATATCCACTATCACACCATTACTCGGTTTTAGGGCTCAGCAGG 724
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 CCAGACCAGAGAAGAGTATATCCATTATCACACCATTACTCGGTTTTAGGGCTCAGCAGG 537
Query 725 TCCCGAGCAACTCCATACACAGAAGCTGAGATTAAGAAAGCATTCAGGGAAAAGGCTTTG 784
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 538 TCCCGAGCAACTCCATACACAGAAGCTGAGATTAAGAAAGCGTTCAGGGAAAAGGCTCTG 597
Query 785 GAATTCCATCCAGACCAAAATCAGGATAACAAAATTGTAGCTGAAGCAAAATTCAAAGAG 844
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 GAATTCCATCCGGACCAAAATCAGGATAACAAAGTTGTAGCTGAAGCAAAATTCAAAGAG 657
Query 845 GTGTTACTTTCATATGAAGCTATAAAACAGGAAATAAAAGAGAAGTGA 892
||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 658 GTGTTACTTTCATATGAAGCTATAAAAGAGGAAAGAAAAGAGAAGTGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5