BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08028.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894887 jgi|Araly1|894887|Al_scaffold_0006_2883 322 7e-88
> Ahg894887 jgi|Araly1|894887|Al_scaffold_0006_2883
Length=240
Score = 322 bits (174), Expect = 7e-88
Identities = 223/246 (91%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 1 ATGACTACTACTATGAAAACTTTTGTCGCATTTGTTTTGACTGTCTTTTTTATTATGTCT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1 ATGACTACTACTATGAAAACTTTTGTCGCATTTGTTTTCACTGTCTTTTTCATTATATCT 60
Query 61 TCTGCTCATTGTCGTACTACAACTGGTGGTAGTCCGGGGTATGGAATAGGGGGGCGTACA 120
|||||||||||||| | |||||||||||||| || ||||| ||||||||||||||
Sbjct 61 TCTGCTCATTGTCG---T---ACTGGTGGTAGTCCAGGTTATGGTATAGGGGGGCGTACG 114
Query 121 AAAACATGCTTTACACCAGCTTTATGTATTTATCGTGGAGTCCATGGGTGCGATAGTTAT 180
|| ||||| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||
Sbjct 115 AAGACATGTTTTACACCAACTTGGTGTCTTTACCGTGGAGTCCATGGGTGCGATAGTTAT 174
Query 181 TGTAAAACTAAAAATTTTGATTACGGCTATTGTAGACAAGAACATTGTTGTTGTGTTAAT 240
|||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 175 TGTAGAACTAAAAATTTTGATTACGGCTATTGTAGTCCAGAACATTGTTGTTGTGTTAAT 234
Query 241 TACTAA 246
||||||
Sbjct 235 TACTAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5