BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08040.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327073 jgi|Araly1|327073|fgenesh1_pm.C_scaffold_6002293 2200 0.0
> Ahg327073 jgi|Araly1|327073|fgenesh1_pm.C_scaffold_6002293
Length=1383
Score = 2200 bits (1191), Expect = 0.0
Identities = 1322/1386 (95%), Gaps = 6/1386 (0%)
Strand=Plus/Plus
Query 1 ATGTTGTCAAGCAAAGTTGTTGGCGACTCTCATGGACAAGACTCATCCTACTTCCTTGGA 60
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGTCTAGCAAAGTTATTGGCGACTCTCATGGACAAGACTCATCCTACTTCCTTGGA 60
Query 61 TGGCAAGAATACGAGAAGAATCCTTTCCACGAGTCGTTTAA-CACTAGTGGGATTGTTCA 119
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 61 TGGCAAGAATACGAGAAGAATCCTTTCCACGAGTCGTTTAATC-CTAGTGGGATTGTTCA 119
Query 120 AATGGGTCTTGCTGAAAACCAGCTTTCTTTTGACCTAATAGAGAAATGGCTTGAAGAGCA 179
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 120 AATGGGTCTTGCTGAAAACCAGCTTTCTTTTGATCTAATAGAGACGTGGCTTGAAGAGCA 179
Query 180 TCCAGAAGTCTTGGGTTTGAAGAAAAATGATGAGTCGGTGTTTAGACAATTAGCTCTGTT 239
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 180 TCCAGAAGTCTTGGGTTTGAAGAAAAATGAAGAGTCGGTCTTTAGACAGTTAGCTCTGTT 239
Query 240 CCAAGATTACCATGGCTTGCCAGCTTTCAAGGATGCCATGGCGAAGTTCATGGGGAAAAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CCAAGATTACCATGGCTTGCCAGCTTTCAAGGATGCCATGGCGAAGTTCATGGGGAAGAT 299
Query 300 CAGAGAGAACAAAGTGAAATTCGATACGAACAAGATGGTTCTTACAGCTGGATCAACCTC 359
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 300 CAGAGAGAACAAAGTGAAATTCGATACGAACAAGATGGTGCTCACAGCTGGCTCAACCTC 359
Query 360 GGCTAACGAGACTCTAATGTTCTGTCTTGCTAATCCAGGAGATGCCTTTCTTATCCCTGC 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GGCTAACGAGACTCTAATGTTCTGTCTTGCTAATCCAGGAGATGCATTTCTTATCCCTGC 419
Query 420 ACCTTATTATCCAGGGTTTGATAGAGATCTCAAATGGAGGACAGGAGTAGAGATTGTTCC 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 ACCTTATTATCCAGGGTTTGATAGAGATCTCAAATGGCGGACAGGAGTAGAGATTGTTCC 479
Query 480 TATCCATTGCGTAAGCTCAAATGGGTACAAGATAACCGAGGATGCATTAGAAGATGCCTA 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 480 TATCCATTGCGTAAGCTCAAATGGGTACAAGATAACGGAGGATGCATTAGAAGATGCTTA 539
Query 540 CGAACGAGCTCTCAAACATAACCTAAATGTTAAAGGAGTTCTCATAACCAACCCTTCAAA 599
||||||||||| | ||| ||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 540 CGAACGAGCTCGCGAACTTAACCTAAACGTTAAAGGAGTTCTAATAACAAACCCTTCAAA 599
Query 600 CCCACTTGGAACCTCTACCACCCGTGAAGAGCTTGATCTTCTTCTGACCTTCACATCAAC 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CCCTCTTGGAACCTCTACCACCCGTGAAGAGCTTGATCTTCTTCTGACCTTCACATCCAC 659
Query 660 CAAGAAAATCCATATGGTTAGCGATGAGATCTACTCGGGAACGGTTTTCGACTCTCCTGA 719
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CAAGAAAATCCATATGGTGAGTGATGAAATCTACTCGGGAACGGTTTTCGACTCTCCTGA 719
Query 720 GTTCACCAGCGTTCTAGAAGTGGCTAAGGACAAGAACATGGGTTTAGATG-GTAAAATCC 778
||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||
Sbjct 720 GTTCACCAGCGTTCTAGAAGTGGCTAAGGACAAGAACATGGATTTGGATGAG-AAAATCC 778
Query 779 ATGTTGTTTACAGCTTGTCCAAAGATCTAGGCCTCCCCGGATTTCGTGTTGGCTTGATTT 838
||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 779 ATGTTGTTTACAGTTTGTCCAAAGATCTAGGCCTCCCTGGATTTCGTGTAGGTTTGATTT 838
Query 839 ACTCAAACAATGAGAAAGTGGTGTCAGCCGCGACTAAAATGTCGAGTTTTGGACTCATTT 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 ACTCAAACAATGAGAAAGTGGTGTCAGCCGCGACAAAAATGTCGAGTTTTGGACTCATTT 898
Query 899 CTTCCCAAACTCAACATTTGCTAGCCAATTTGCTGTCTGATGAAAGATTCACGACCAACT 958
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 899 CTTCCCAAACTCAACATCTGCTAGCCAATTTGTTGTCTGACGAAAGATTCACGACCAACT 958
Query 959 ATTTGGAAGAGAACAAGAAGAGGCTGAGAGAGAGAAAGGATAGGCTGGTTTCGGGTCTAA 1018
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 959 ACTTGGAAGAGAACAAGAAGAGGCTGAGAGAGAGAAAAGACAGGCTGGTTTCGGGTCTAA 1018
Query 1019 AGGAAGC-GGGTATCAGTTGTTTGAAGAGTAACGCAGGTTTGTTCTGTTGGGTTGACTTA 1077
||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 AGGAAGCAGGG-ATCGGTTGTTTGAAGAGCAACGCAGGTTTGTTCTGTTGGGTTGACTTA 1077
Query 1078 AGACACCTCTTGAAATCCAACACTTTTGAGGCCGAGCATTCTTTATGGACAAAGATTGTG 1137
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1078 AGACACCTCTTGAAATCCAACACTTTCGAGGCAGAGCACTCTTTATGGACAAAGATTGTG 1137
Query 1138 TGTGAAGTTGGTCTTAACATCTCTCCAGGCTCATCGTGTCATTGCGATGAACCTGGTTGG 1197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 TGTGAAGTTGGTCTTAACATCTCTCCAGGCTCATCGTGTCACTGCGATGAACCTGGTTGG 1197
Query 1198 TTTAGAGTTTGTTTCGCGAATATGTCGGACCAAACGATGGAGGTTGCTATGGACCGTGTT 1257
||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1198 TTTCGAGTTTGTTTCGCAAATATGTCCGACCAAACGATGGAGGTCGCTATGGACCGTGTT 1257
Query 1258 AAAGGTTTTGTTGACAACAATAATGGTGGTAAACAAAAGAGAACCATGTGGGATACAAGG 1317
|||||||| || || ||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1258 AAAGGTTTCGTAGAGAACAATACTCGTGGTAAGCAAAAGAGAACCATGTGGGATACAAGA 1317
Query 1318 AGAAGATCTCTTATCAACAAATGGGTCTCCAAGCTTTCCTCTGTTACTTGTGAATCAGAA 1377
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGAAGATCTCTTATCAACAAGTGGGTCTCCAAGCTTTCCTCTGTTACTTGTGAATCAGAA 1377
Query 1378 CGTTGA 1383
||||||
Sbjct 1378 CGTTGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5