BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08110.1
Length=2715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930794 jgi|Araly1|930794|scaffold_303251.1 215 2e-54
Ahg948824 jgi|Araly1|948824|scaffold_800711.1 213 6e-54
Ahg941972 jgi|Araly1|941972|scaffold_602516.1 189 9e-47
Ahg936794 jgi|Araly1|936794|scaffold_500985.1 183 4e-45
Ahg923758 jgi|Araly1|923758|scaffold_105039.1 183 4e-45
Ahg942511 jgi|Araly1|942511|scaffold_603055.1 152 1e-35
Ahg338295 jgi|Araly1|338295|fgenesh1_pg.C_scaffold_2000394 104 3e-21
Ahg942510 jgi|Araly1|942510|scaffold_603054.1 99.0 2e-19
Ahg930512 jgi|Araly1|930512|scaffold_302969.1 99.0 2e-19
Ahg359114 jgi|Araly1|359114|fgenesh1_pg.C_scaffold_9000154 99.0 2e-19
> Ahg930794 jgi|Araly1|930794|scaffold_303251.1
Length=375
Score = 215 bits (116), Expect = 2e-54
Identities = 146/160 (91%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 2221 AGAAAATGCTCGACGTGATGCAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGG 2279
||| ||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 154 AGAGAATGCTCGACGTGATGCGGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGG 212
Query 2280 AGATGCTTG-TATCGTATTGGAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCT 2338
||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 213 AGAGGCTTGTTAT-GTATTGGAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCT 271
Query 2339 CAGCCACATccaactgcaccagccaccacaccagccacca 2378
|||||||| |||||||||||||||| ||||| |||| |||
Sbjct 272 CAGCCACAACCAACTGCACCAGCCAACACACAAGCCGCCA 311
> Ahg948824 jgi|Araly1|948824|scaffold_800711.1
Length=598
Score = 213 bits (115), Expect = 6e-54
Identities = 166/189 (88%), Gaps = 9/189 (5%)
Strand=Plus/Plus
Query 2221 AGAAAATGCTCGACGTGATGCAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGG 2279
||| ||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 322 AGAGAATGCTCGACGTGATGCGGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGG 380
Query 2280 AGATG-CTTG-TATCGTATTGGAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATC 2337
||| | |||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 381 AGA-GACTTGTTAT-GTATTGGAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATC 438
Query 2338 TCAGCCACATccaactgcaccagccaccacaccagccacca---caccagccgctagtgc 2394
||||||||| |||||||||||||||| ||||| |||| ||| || ||||| | | |||
Sbjct 439 TCAGCCACAACCAACTGCACCAGCCAACACACAAGCCGCCAATGCAACAGCCACCAATGC 498
Query 2395 aacaaccac 2403
|||| ||||
Sbjct 499 AACAGCCAC 507
> Ahg941972 jgi|Araly1|941972|scaffold_602516.1
Length=529
Score = 189 bits (102), Expect = 9e-47
Identities = 128/140 (91%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 2241 CAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGGAGATGCTTG-TATCGTATTG 2298
||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| ||||||
Sbjct 288 CAGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGGAGAGGCTTGTTAT-GTATTG 345
Query 2299 GAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCTCAGCCACATccaactgcacc 2358
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACC 405
Query 2359 agccaccacaccagccacca 2378
||||| ||||| |||| |||
Sbjct 406 AGCCAACACACAAGCCCCCA 425
> Ahg936794 jgi|Araly1|936794|scaffold_500985.1
Length=543
Score = 183 bits (99), Expect = 4e-45
Identities = 127/140 (91%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 2241 CAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGGAGATGCTTG-TATCGTATTG 2298
||||||||||| | |||||||| |||||| ||||||||||||| ||||| ||| ||||||
Sbjct 288 CAGAGCAACAAGC-ATCTCAAATTCGGATTGCAAACTTGGAGAGGCTTGTTAT-GTATTG 345
Query 2299 GAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCTCAGCCACATccaactgcacc 2358
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACC 405
Query 2359 agccaccacaccagccacca 2378
||||| ||||| |||| |||
Sbjct 406 AGCCAACACACAAGCCGCCA 425
> Ahg923758 jgi|Araly1|923758|scaffold_105039.1
Length=543
Score = 183 bits (99), Expect = 4e-45
Identities = 127/140 (91%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 2241 CAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGGAGATGCTTG-TATCGTATTG 2298
||||||||||| | |||||||| |||||| ||||||||||||| ||||| ||| ||||||
Sbjct 288 CAGAGCAACAAGC-ATCTCAAATTCGGATTGCAAACTTGGAGAGGCTTGTTAT-GTATTG 345
Query 2299 GAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCTCAGCCACATccaactgcacc 2358
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACC 405
Query 2359 agccaccacaccagccacca 2378
||||| ||||| |||| |||
Sbjct 406 AGCCAACACACAAGCCGCCA 425
> Ahg942511 jgi|Araly1|942511|scaffold_603055.1
Length=324
Score = 152 bits (82), Expect = 1e-35
Identities = 103/113 (91%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 2262 CTCGGATCGCAAACTTGGAGATGCTTGT-ATCGTATTGGAAACAGAGTGATCCTGCGTTT 2320
|||| || ||||||||||||| ||| || || |||||||||| ||||||||||||| |||
Sbjct 46 CTCGAATTGCAAACTTGGAGAGGCTGGTAAT-GTATTGGAAAGAGAGTGATCCTGCCTTT 104
Query 2321 GCAGCTTTTGTTGCATCTCAGCCACATccaactgcaccagccaccacaccagc 2373
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 105 GCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACCAGCCACCACAGCAGC 157
> Ahg338295 jgi|Araly1|338295|fgenesh1_pg.C_scaffold_2000394
Length=591
Score = 104 bits (56), Expect = 3e-21
Identities = 81/93 (87%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 653 AGATGGTCGAGTATATGTTGGGTCTGCCTGGCCGAGAGCATCTTCCACGTCTTAGT-CGG 711
||||| | ||| || |||||| ||||||||||||||||||||||||||| || ||| |
Sbjct 476 AGATGTTAGAGAATTTGTTGGTTCTGCCTGGCCGAGAGCATCTTCCACGGCTGAGTAATG 535
Query 712 ACCCAAATTCCAGGCGTTGAGACTATATGGTAT 744
||| ||||||||||||||||||||||||||||
Sbjct 536 TCCC-AATTCCAGGCGTTGAGACTATATGGTAT 567
> Ahg942510 jgi|Araly1|942510|scaffold_603054.1
Length=645
Score = 99.0 bits (53), Expect = 2e-19
Identities = 81/94 (86%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 653 AGATGGTCGAGTATATGTTGGGTCTGCCTGGCCGAGAGCATCTTCCACGTCTTAGTCG-G 711
||||| | ||| || |||||| | |||||||||||||||||||||||||||| ||| | |
Sbjct 512 AGATGTTAGAGAATTTGTTGGTTTTGCCTGGCCGAGAGCATCTTCCACGTCTAAGTAGAG 571
Query 712 -ACCCAAATTCCAGGCGTTGAGACTATATGGTAT 744
||| || |||||| |||||||||||||||||||
Sbjct 572 TACC-AA-TTCCAGACGTTGAGACTATATGGTAT 603
> Ahg930512 jgi|Araly1|930512|scaffold_302969.1
Length=259
Score = 99.0 bits (53), Expect = 2e-19
Identities = 70/78 (90%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 668 TGTTGGGTCTGCCTGGCCGAGAGCATCTTCCACGTCTTAGTCG-GACCCAAATTCCAGGC 726
|||||| ||||||||||||||||||||||||||| || ||| | ||||| ||||||||
Sbjct 139 TGTTGGTTCTGCCTGGCCGAGAGCATCTTCCACGGCTGAGTAATGTCCCAA-TTCCAGGC 197
Query 727 GTTGAGACTATATGGTAT 744
||||||||||||||||||
Sbjct 198 GTTGAGACTATATGGTAT 215
> Ahg359114 jgi|Araly1|359114|fgenesh1_pg.C_scaffold_9000154
Length=582
Score = 99.0 bits (53), Expect = 2e-19
Identities = 81/94 (86%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 653 AGATGGTCGAGTATATGTTGGGTCTGCCTGGCCGAGAGCATCTTCCACGTCTTAGTCG-G 711
||||| | ||| || |||||| | |||||||||||||||||||||||||||| ||| | |
Sbjct 470 AGATGTTAGAGAATTTGTTGGTTTTGCCTGGCCGAGAGCATCTTCCACGTCTAAGTAGAG 529
Query 712 -ACCCAAATTCCAGGCGTTGAGACTATATGGTAT 744
||| || |||||| |||||||||||||||||||
Sbjct 530 TACC-AA-TTCCAGACGTTGAGACTATATGGTAT 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102424668805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5