BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08150.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489727 jgi|Araly1|489727|fgenesh2_kg.6__2861__AT4G08150.1 2488 0.0
> Ahg489727 jgi|Araly1|489727|fgenesh2_kg.6__2861__AT4G08150.1
Length=1687
Score = 2488 bits (1347), Expect = 0.0
Identities = 1599/1714 (93%), Gaps = 44/1714 (3%)
Strand=Plus/Plus
Query 1 CCTTGACGAATTCTATATACCTAGTTCGttttttcttcctcaaatatatctttttcaatt 60
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1 CCTTGACGAATTCTATATTCCTAGTTCGTTTTTTCTTCCTCACATATATCATTTTCAATT 60
Query 61 tatttggtttttctttgggtgcaacttcacctcacaa-a-attttctctctttttttATA 118
||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
Sbjct 61 TATTTGGTTTTTCTTTGGGTGCAACTTCACCTCACAATATTTTTTCTTTCTTTTTTT-T- 118
Query 119 TTAATTT-GAGTTAGGCCTTTTTGATTTCATAGATGAGTCGTCTAGTCGTCTGGATTTGA 177
|| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 TT-ATTTCGAGTTAGGCCTTTTTGATTTCATAGATGAGTCGTCTAGTCATCTGGATTTGA 177
Query 178 TGTGGTTATAGTCTTACAGAGACCTTTGATTGAAATAAGAACAAAAGCAAGAATACATAC 237
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTGGTTTTACTCTTACAGAGACCTTTGATTGAAATAAGAACAAAAGCAAGAATACATAC 237
Query 238 ATCCTCTTCATCTTACACCCATCCttttttatttttctagggttttatttttttttaatt 297
|||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||
Sbjct 238 ATCCTCTTCATCTTGCACCCATCC-TTTTTATTTTTTTAGGGTTTT-TTTTTTTTT--TT 293
Query 298 tattttttttctttgatttttATA---Ttctc--tctctctctcAAATCTTTACTCATCT 352
||||| | | | ||||||||| ||||| |||||||||||| | |||||||||||
Sbjct 294 AATTTTATCCCATCAATTTTTATATTCTTCTCTTTCTCTCTCTCAAGT-TTTACTCATCT 352
Query 353 GGGTATGGAAGAATACCAGCATGACAACAGCACCACTCCTCAAAGAGTAAGTTTCTTGTA 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 GGGTATGGAAGAATACCAGCATGACAACAGCTCCACTCCTCAAAGAGTAAGTTTCTTGTA 412
Query 413 CTCTCCAATCTCTTCTTCcaacaaaaacgataacacaagtgataccaacaacaacaacaa 472
|||||| ||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 413 CTCTCCTATCTCTTCTTCCAACAAAAACAATAACACAAGCGAT---------AACAACAG 463
Query 473 caaTAATAATAGTAGCAATTATGGTCCTGGTTACAATAATACTAACAACAACAATCATCA 532
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 464 C---AATAATAGTAGCAATTATGGTCCTGGTTACAATAATACTAATAACAACAATCATCA 520
Query 533 CCACCAACACATGTTGTTTCCACATATGAGCTCTCTTCTCCCTCAAACA-ACCGAGAATT 591
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 521 CCACCAACACATGTTGTTCCCACATATGAGCTCTCTTCTCCCTCAAA-ATACCGAGAATT 579
Query 592 GCTTCCGATCTGATCATGATCAACCCAACAACAACAACAACCCATCTGTTAAATCTGAAG 651
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 580 GCTTCCGATCGGATCATGATCAA-CC--CAACAACAACAACCCATCTGTTAAATCTGAAG 636
Query 652 CTAGCTCCTCAAGAATCAATCATTACTCCATGTTAATGAGAGCCATCCACAATACTCAAG 711
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 637 CTAGCTCCTCAAGAATCAATCATTACTCTATGTTGATGAGGGCCATCCACAATACGCAAG 696
Query 712 AAGCTAACAAC-A-A-CAACAATGACAACGTAAGCGATGTTGAAGCCATGAAGGCTAAAA 768
||||||||||| | | ||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 697 AAGCTAACAACAACACCAATAATGATAACGTAAGCGATGTTGAAGCCATGAAGGCCAAGA 756
Query 769 TCATTGCTCATCCTCACTACTCTACCCTCCTACAAGCTTACTTGGACTGCCAAAAGATTG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TCATTGCTCATCCTCACTACTCTACCCTCCTACAAGCTTACTTGGACTGCCAAAAGATTG 816
Query 829 GAGCTCCACCTGATGTGGTTGATAGAATTACGGCGGCACGGCAAGACTTTGAGGCTCGAC 888
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 817 GAGCTCCACCTGAAGTGGTTGATAGAATTACGGCCGCACGGCAAGACTTCGAGGCTCGAC 876
Query 889 AACAGCGGTCAACACCGTCTGTCTCTGCCTCCTCTAGAGACCCGGAGTTAGATCAATTCA 948
|||||||| |||||| |||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 877 AACAGCGGCCAACACTGTCTGTGTCTGCCTCCTCTAGAGACCCGGAATTGGATCAATTCA 936
Query 949 TGGAAGCATACTGTGACATGTTGGTTAAATATCGTGAGGAGCTAACAAGGCCCATTCAGG 1008
|||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 937 TGGAAGCATATTGTGACATGTTGGTTAAATATCGAGAGGAGCTAACACGGCCCATTCAAG 996
Query 1009 AAGCAATGGAGTTTATACGTCGTATTGAATCTCAGCTTAGCATGTTGTGTCAGAGTCCCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 AAGCAATGGAGTTTATACGTCGTATTGAATCTCAGCTTAGCATGTTGTGTCAGAGTCCCA 1056
Query 1069 TTCACATCCTCAACAATCCT---GATGGGAAGAGTGA-CAATATGGGATCATCAGACGAA 1124
|||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct 1057 TTCATATCCTCAACAATCCTGCAGATGGGAAAAGTGAGGGA-ATGGGATCATCAGACGAA 1115
Query 1125 GAACAAGAGAATAACAGCGGAGGGGAAACAGAATTACCGGAAATAGACCCGAGGGCCGAA 1184
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1116 GAACAAGAGAATACCAGCGGAGGGGAAACAGAATTACCGGAAATAGACCCGAGGGCGGAA 1175
Query 1185 GATCGGGAACTCAAGAACCATTTGCTGAAGAAGTATAGTGGATACTTAAGCAGTTTGAAG 1244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GATCGGGAACTCAAGAACCACTTGCTGAAGAAGTATAGTGGATACTTAAGCAGTTTGAAG 1235
Query 1245 CAAGAACTATCCAAGAAGAAAAAGAAAGGTAAACTTCCTAAAGAAGCACGGCAGAAGCTT 1304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1236 CAAGAACTATCCAAGAAGAAAAAGAAAGGTAAACTTCCCAAAGAAGCACGGCAGAAGCTT 1295
Query 1305 CTCACGTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCTGAGTCAGAGAAGGTAGCG 1364
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1296 CTCACGTGGTGGGAGTTGCATTACAAGTGGCCGTATCCTTCTGAATCAGAGAAGGTGGCG 1355
Query 1365 TTGGCGGAATCAACGGGGTTAGATCAGAAACAAATCAACAATTGGTTCATAAACCAAAGA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TTGGCGGAATCAACGGGGTTAGATCAGAAACAAATCAACAATTGGTTCATAAACCAAAGA 1415
Query 1425 AAGCGTCACTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCAC 1484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AAGCGTCACTGGAAACCGTCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCAC 1475
Query 1485 CCGCACCACGCAGCTCTGTACATGGATGGTCATTACATGGGTGATGGACCTTATCGTCTC 1544
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 CCACACCACGCAGCTCTGTACATGGATGGTCATTACATGGGTGATGGACCTTATCGTCTT 1535
Query 1545 GGTCCATAAGACATCCAAAAGCTTTAGCCACATAATAACAACCTCTCGTTGCTTTCTTGT 1604
|||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||
Sbjct 1536 GGTCCATAAGACATCCAAAAGCGTTAGCCACAAAATAACAACTTCTTGTTGCTTTCTTGT 1595
Query 1605 TACAACTCATGTTTTGAATTCCCCTACATCAGTTTGCTACTTATAGCTTTCTTTGTTTTC 1664
||||| | |||||||||| |||||||||||| |||||||||||||||||| || |||||
Sbjct 1596 TACAATTTATGTTTTGAACTCCCCTACATCACTTTGCTACTTATAGCTTTATTGGTTTT- 1654
Query 1665 ACGCC-TTTTGTAATGTCTTATGTCGTTCGGGGA 1697
|| || ||||||||||| ||||||||||||||||
Sbjct 1655 AC-CCGTTTTGTAATGTATTATGTCGTTCGGGGA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5