BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08160.1
Length=2516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489729 jgi|Araly1|489729|fgenesh2_kg.6__2863__AT4G08160.1 3332 0.0
> Ahg489729 jgi|Araly1|489729|fgenesh2_kg.6__2863__AT4G08160.1
Length=2322
Score = 3332 bits (1804), Expect = 0.0
Identities = 2137/2300 (93%), Gaps = 13/2300 (1%)
Strand=Plus/Plus
Query 54 CTTAATCTTCTTCGCTTGGAACTTGCTATGGAGAAGAATACAAATACGAACCATACAAGT 113
||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1 CTTAATCTTCTTCGCTTAGAACTTGCTATGGAGAAAAATACAAACATGAACCATACAAGT 60
Query 114 GATGATAATAATGATAAGAATCACACTAACGAAGAGCAGGAGAAGATCATCTTAAACCCT 173
|||||| | ||||||||| |||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 61 GATGATGACAATGATAAGCATCACACTAACGAAGAACAGGAGAAGATAATCCTAAACCCT 120
Query 174 AATTTTGAGGATGGCCTAAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAA 233
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTTTGAGGATGGCCTGAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAG 180
Query 234 TCCATGGACAGTGGGAAGATCGTACCGCTCTCGGGAAAAGTTTTCGCAGCAGCAACGCAG 293
||||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 181 TCCATGGACGGAGGGAAAATCGTACCACTCTCGGGAAAAGTTTTCGCAGCGGCAACACAG 240
Query 294 CGTAAAGACACATGGAATGGGATTCAACAAGAGATTTCAGGAAGA-TTCAGGAGGAAGCG 352
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 241 CGTAAAGACACATGGAATGGGATTCAACAGGAGATTTCAGGAAGATTTCA-GAGGAAGCG 299
Query 353 TGTGTATGAAGTAACAGCGGTAGTTCGAATATTTGGCAACAATGTCAC-AAGTGCAACAG 411
|||||||||||||||||| | ||||||||||||||||||||||| || || ||||||||
Sbjct 300 TGTGTATGAAGTAACAGCAATGGTTCGAATATTTGGCAACAATGTTACGAA-TGCAACAG 358
Query 412 TACAAGCGACTCTCTGGGTCTTAAACGCAAA-CAAACGTGAACAATACATAGTCATTGCC 470
|||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 359 TACAGGCGACTCTATGGGTCTTAAACGCAAATC-AACGTGAACAATACATAGTCATTGCC 417
Query 471 AATGTTCAAGCAACAGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCATGGT 530
||||| || || || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AATGTGCAGGCGACTGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCAGGGT 477
Query 531 TCGCCATCGAGAGTAATACTATACCTTGAAGGTCCACCTCCACGAGCTGACATTCTTCTC 590
||||||||||| || |||||||||||||||||||||||| || | ||||||||||||||
Sbjct 478 TCGCCATCGAGGGTGATACTATACCTTGAAGGTCCACCTTCAGGTTCTGACATTCTTCTC 537
Query 591 AACAGTTTAGTTGTTCAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTACGAG 650
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 AACAGTTTAGTTGTTAAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTATGAG 597
Query 651 AATCCTGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTTTTAGATGGGGGAACTAAA 710
||||| ||||||||||||||||||||||||||||||||||| || | |||| ||| ||
Sbjct 598 AATCCCGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTGGTAAACGGGGCAACCCAA 657
Query 711 CCATGGTTCACTCTAGGGAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCGCGCACTCTG 770
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 CCATGGTTCACCCTAGGAAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCTCGCACTCTG 717
Query 771 CCTCCAATGGCGAGAGACACGCTAGGTCCTCACAAACCTCTAGGTGGAAACTACATCGTT 830
|| |||||||||||||||||||| ||||||| ||||||||| || |||| ||||||| |
Sbjct 718 CCCCCAATGGCGAGAGACACGCTCGGTCCTCGCAAACCTCTTGGCGGAAGCTACATCCTC 777
Query 831 GTGACTAACAGAACGCAGACTTGGATGGGTCCTGCTCAGATGATAACCGATAAAATCAAA 890
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 GTGACTAACAGAACGCAGACTTGGATGGGTCCGGCTCAGATGATAACCGATAAAATCAAA 837
Query 891 CTCTTCTTGACATATCAAATCTCAGCTTGGGTCAAGCTTGGTGTGGGAGTAAGTGGTAGT 950
|||||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||
Sbjct 838 CTCTTCTTGACATATCAAGTTTCAGCGTGGGTCAAAATTGGTGTGGGAGTGAGTGGTAGT 897
Query 951 AGTATGAGTCCTCAGAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAACGGA 1010
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 AGTATGAGTCCTCAAAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAATGGA 957
Query 1011 GGACAAGTCGAGGTCACAGTTGGTGATACATGGCATGAAATAGCCGGATCTTTTAGGCTA 1070
||||||||||||| ||| |||||||||||||||||||||| | |||| | ||||||||
Sbjct 958 GGACAAGTCGAGGCCACCCTTGGTGATACATGGCATGAAATCGGCGGAACCTTTAGGCTT 1017
Query 1071 GAGAAACAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGGAGCTGGCATTGATTTG 1130
||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 1018 GAGAAGCAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGCAGCTGGTATCGATTTG 1077
Query 1131 ATGATCGCGGCTCTGCAGATTTTCCCCGTGGATCGTCGAGAACGTGTCAGATGTCTCAAA 1190
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1078 ATGATCGCGGGACTGCAGATTTTTCCCGTGGATCGTCGAGACCGTGTCAGATGTCTCAAA 1137
Query 1191 AGACAAGTTGATGAGGTACGTAAGCGCGACATCGTGTTGAAATTCTCAGGACTAAACGAC 1250
|||||||||||| ||||||||||||||||||| || ||||||||||| ||||| | |||
Sbjct 1138 AGACAAGTTGATCAGGTACGTAAGCGCGACATTGTCTTGAAATTCTCCGGACT--A-GAC 1194
Query 1251 GACGAATCCTTTGATTTGTTTCCTTACATAGTGAAAGTGAAACAAACATACAACAGTTTC 1310
|| || |||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1195 GAGGACTCCTCCGATTTGTTTCCTTACATAGTGAAGGTTAAACAAACATACAACAGTTTC 1254
Query 1311 CCAGTAGGAACATGCATCAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1370
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CCTGTAGGAACATGCATTAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1314
Query 1371 ACAAAGAACTTTAACTGGGCAGTGTTCGGAAACGAGCTCAAATGGTACGCGACAGAAGCG 1430
||||||||||| || ||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 1315 ACAAAGAACTTCAATTGGGCAGTGTTCGGAAACGAGCTTAAATGGTACTCAACAGAAGCC 1374
Query 1431 GAACGTGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGCAAC 1490
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 GAACGAGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGTAAC 1434
Query 1491 AACATAAACGTTAGAGGACATTGTATCTTCTGGGAAGTTGAATCCACAGTTCAGCCATGG 1550
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1435 AACATAAACGTTAGAGGACATTGCATCTTCTGGGAAGTTGAATCCACTGTTCAGCCATGG 1494
Query 1551 GTTCGCCAGCTTAACAAAACCGATCTTATGAACGCGGTACAAAAGCGTCTCACGGATCTT 1610
||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1495 GTTCGGCAGCTTAACAAAACCGATCTTATGAACGCGGTCCAAAGGCGTCTCACGGATCTT 1554
Query 1611 TTGACGCGGTACAAAGGTAAATTCAAGCACTATGATGTCAACAACGAGATGCTTCATGGT 1670
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1555 CTGACACGATACAAAGGTAAATTCAAGCACTACGATGTCAACAACGAGATGCTTCATGGT 1614
Query 1671 TCTTTCTATCAAGATAGACTTGGAAAAGGTGTAAGAGCACTCATGTTCAATATTGCACAT 1730
|||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1615 TCTTTCTATCAAGACAAACTTGGAAAAGGTGTAAGAGCACTTATGTTCAACATTGCACAC 1674
Query 1731 AAGCTTGATCCATCTCCTTTGCTTTTCGTTAACGATTATCATGTTGAGGACGGGGATGAC 1790
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1675 AAGCTTGATCCATCTCCTCTGCTTTTCGTAAACGATTATCATGTTGAAGACGGGGATGAC 1734
Query 1791 CCGCGTTCGTCTCCCGAGAAGTATATAAAACTTGTACTTGATTTGGAAGCTCAAGGAGCA 1850
| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1735 ACACGTTCGTCCCCCGAGAAGTATATAAAACTTGTTCTTGATTTGGAAGCGCAAGGAGCA 1794
Query 1851 ACT-GTAGGAGGGATTGGGATCCAAGGACATATAGATAGTCCTGTTGGAGCTATTGTTTG 1909
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1795 A-TAGTAGGAGGGATTGGGATCCAAGGACATATAGATAGCCCTGTTGGAGCTATTGTTTG 1853
Query 1910 TTCTGCTCTTGATATGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1969
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 CTCTGCTCTTGATAAGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1913
Query 1970 CTCTTCGAGTAATGAATATGTTAGGGGAGAGGATCTTGAAGTTATGTTGTGGGAAGCATT 2029
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1914 CTCTTCGAGTAATGAATATGTTAGAGGAGAAGATCTTGAAGTTATGTTGTGGGAAGCATT 1973
Query 2030 TGCTCACCCTTCAGTTGAAGGAATAATGTTATGGGGGTTCTGGGAGCTATCTATGAGTAG 2089
||| |||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 1974 TGCCCACCCTGCAGTTGAAGGAATAATGCTATGGGGTTTCTGGGAACTATCTATGAGTAG 2033
Query 2090 AGAGAACGCGAATCTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGAAAAAGATTT-T 2148
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2034 AGAGAACGCGAATTTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGGAAAAGATTTCT 2093
Query 2149 TAGAGGTGAAACAAGAATGGTTATCTCATGCATATGGGATCATCAATGATGAGTCAGAGT 2208
| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2094 T-GAGGTGAAAGAAGAATGGTTATCTCATGCATATGGGATCATTAATGATGAATCAGAGT 2152
Query 2209 TCACATTCAGAGGCTACCATGGGACTTATGCCGTCGAAATTTGTACTCCAGCTGGGATTG 2268
||||||||| |||||| ||||||||||| ||||| ||| |||||||||| ||||||||||
Sbjct 2153 TCACATTCAAAGGCTATCATGGGACTTACGCCGTTGAAGTTTGTACTCCGGCTGGGATTG 2212
Query 2269 TTCTCAAAACGTTCGTTGTCGAAAAAGGAGACACTCCACTTGTTATCTCCATTGATCTCT 2328
|||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||
Sbjct 2213 TTCTCAAAACGTTCGTTGTCGACAAAGGAGACACTCCACTTATTATATCCATTGATCTCT 2272
Query 2329 CTTCtttgtgatgtttgtgt 2348
||| |||||||||||| |||
Sbjct 2273 CTTGTTTGTGATGTTTTTGT 2292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94844710050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5