BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08160.1 Length=2516 Score E Sequences producing significant alignments: (Bits) Value Ahg489729 jgi|Araly1|489729|fgenesh2_kg.6__2863__AT4G08160.1 3332 0.0 > Ahg489729 jgi|Araly1|489729|fgenesh2_kg.6__2863__AT4G08160.1 Length=2322 Score = 3332 bits (1804), Expect = 0.0 Identities = 2137/2300 (93%), Gaps = 13/2300 (1%) Strand=Plus/Plus Query 54 CTTAATCTTCTTCGCTTGGAACTTGCTATGGAGAAGAATACAAATACGAACCATACAAGT 113 ||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||| Sbjct 1 CTTAATCTTCTTCGCTTAGAACTTGCTATGGAGAAAAATACAAACATGAACCATACAAGT 60 Query 114 GATGATAATAATGATAAGAATCACACTAACGAAGAGCAGGAGAAGATCATCTTAAACCCT 173 |||||| | ||||||||| |||||||||||||||| ||||||||||| ||| |||||||| Sbjct 61 GATGATGACAATGATAAGCATCACACTAACGAAGAACAGGAGAAGATAATCCTAAACCCT 120 Query 174 AATTTTGAGGATGGCCTAAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAA 233 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATTTTGAGGATGGCCTGAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAG 180 Query 234 TCCATGGACAGTGGGAAGATCGTACCGCTCTCGGGAAAAGTTTTCGCAGCAGCAACGCAG 293 ||||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 181 TCCATGGACGGAGGGAAAATCGTACCACTCTCGGGAAAAGTTTTCGCAGCGGCAACACAG 240 Query 294 CGTAAAGACACATGGAATGGGATTCAACAAGAGATTTCAGGAAGA-TTCAGGAGGAAGCG 352 ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| Sbjct 241 CGTAAAGACACATGGAATGGGATTCAACAGGAGATTTCAGGAAGATTTCA-GAGGAAGCG 299 Query 353 TGTGTATGAAGTAACAGCGGTAGTTCGAATATTTGGCAACAATGTCAC-AAGTGCAACAG 411 |||||||||||||||||| | ||||||||||||||||||||||| || || |||||||| Sbjct 300 TGTGTATGAAGTAACAGCAATGGTTCGAATATTTGGCAACAATGTTACGAA-TGCAACAG 358 Query 412 TACAAGCGACTCTCTGGGTCTTAAACGCAAA-CAAACGTGAACAATACATAGTCATTGCC 470 |||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 359 TACAGGCGACTCTATGGGTCTTAAACGCAAATC-AACGTGAACAATACATAGTCATTGCC 417 Query 471 AATGTTCAAGCAACAGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCATGGT 530 ||||| || || || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 418 AATGTGCAGGCGACTGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCAGGGT 477 Query 531 TCGCCATCGAGAGTAATACTATACCTTGAAGGTCCACCTCCACGAGCTGACATTCTTCTC 590 ||||||||||| || |||||||||||||||||||||||| || | |||||||||||||| Sbjct 478 TCGCCATCGAGGGTGATACTATACCTTGAAGGTCCACCTTCAGGTTCTGACATTCTTCTC 537 Query 591 AACAGTTTAGTTGTTCAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTACGAG 650 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 538 AACAGTTTAGTTGTTAAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTATGAG 597 Query 651 AATCCTGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTTTTAGATGGGGGAACTAAA 710 ||||| ||||||||||||||||||||||||||||||||||| || | |||| ||| || Sbjct 598 AATCCCGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTGGTAAACGGGGCAACCCAA 657 Query 711 CCATGGTTCACTCTAGGGAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCGCGCACTCTG 770 ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 658 CCATGGTTCACCCTAGGAAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCTCGCACTCTG 717 Query 771 CCTCCAATGGCGAGAGACACGCTAGGTCCTCACAAACCTCTAGGTGGAAACTACATCGTT 830 || |||||||||||||||||||| ||||||| ||||||||| || |||| ||||||| | Sbjct 718 CCCCCAATGGCGAGAGACACGCTCGGTCCTCGCAAACCTCTTGGCGGAAGCTACATCCTC 777 Query 831 GTGACTAACAGAACGCAGACTTGGATGGGTCCTGCTCAGATGATAACCGATAAAATCAAA 890 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 778 GTGACTAACAGAACGCAGACTTGGATGGGTCCGGCTCAGATGATAACCGATAAAATCAAA 837 Query 891 CTCTTCTTGACATATCAAATCTCAGCTTGGGTCAAGCTTGGTGTGGGAGTAAGTGGTAGT 950 |||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||| Sbjct 838 CTCTTCTTGACATATCAAGTTTCAGCGTGGGTCAAAATTGGTGTGGGAGTGAGTGGTAGT 897 Query 951 AGTATGAGTCCTCAGAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAACGGA 1010 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 898 AGTATGAGTCCTCAAAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAATGGA 957 Query 1011 GGACAAGTCGAGGTCACAGTTGGTGATACATGGCATGAAATAGCCGGATCTTTTAGGCTA 1070 ||||||||||||| ||| |||||||||||||||||||||| | |||| | |||||||| Sbjct 958 GGACAAGTCGAGGCCACCCTTGGTGATACATGGCATGAAATCGGCGGAACCTTTAGGCTT 1017 Query 1071 GAGAAACAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGGAGCTGGCATTGATTTG 1130 ||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||| Sbjct 1018 GAGAAGCAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGCAGCTGGTATCGATTTG 1077 Query 1131 ATGATCGCGGCTCTGCAGATTTTCCCCGTGGATCGTCGAGAACGTGTCAGATGTCTCAAA 1190 |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1078 ATGATCGCGGGACTGCAGATTTTTCCCGTGGATCGTCGAGACCGTGTCAGATGTCTCAAA 1137 Query 1191 AGACAAGTTGATGAGGTACGTAAGCGCGACATCGTGTTGAAATTCTCAGGACTAAACGAC 1250 |||||||||||| ||||||||||||||||||| || ||||||||||| ||||| | ||| Sbjct 1138 AGACAAGTTGATCAGGTACGTAAGCGCGACATTGTCTTGAAATTCTCCGGACT--A-GAC 1194 Query 1251 GACGAATCCTTTGATTTGTTTCCTTACATAGTGAAAGTGAAACAAACATACAACAGTTTC 1310 || || |||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1195 GAGGACTCCTCCGATTTGTTTCCTTACATAGTGAAGGTTAAACAAACATACAACAGTTTC 1254 Query 1311 CCAGTAGGAACATGCATCAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1370 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 CCTGTAGGAACATGCATTAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1314 Query 1371 ACAAAGAACTTTAACTGGGCAGTGTTCGGAAACGAGCTCAAATGGTACGCGACAGAAGCG 1430 ||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||| Sbjct 1315 ACAAAGAACTTCAATTGGGCAGTGTTCGGAAACGAGCTTAAATGGTACTCAACAGAAGCC 1374 Query 1431 GAACGTGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGCAAC 1490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1375 GAACGAGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGTAAC 1434 Query 1491 AACATAAACGTTAGAGGACATTGTATCTTCTGGGAAGTTGAATCCACAGTTCAGCCATGG 1550 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1435 AACATAAACGTTAGAGGACATTGCATCTTCTGGGAAGTTGAATCCACTGTTCAGCCATGG 1494 Query 1551 GTTCGCCAGCTTAACAAAACCGATCTTATGAACGCGGTACAAAAGCGTCTCACGGATCTT 1610 ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1495 GTTCGGCAGCTTAACAAAACCGATCTTATGAACGCGGTCCAAAGGCGTCTCACGGATCTT 1554 Query 1611 TTGACGCGGTACAAAGGTAAATTCAAGCACTATGATGTCAACAACGAGATGCTTCATGGT 1670 |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1555 CTGACACGATACAAAGGTAAATTCAAGCACTACGATGTCAACAACGAGATGCTTCATGGT 1614 Query 1671 TCTTTCTATCAAGATAGACTTGGAAAAGGTGTAAGAGCACTCATGTTCAATATTGCACAT 1730 |||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||| Sbjct 1615 TCTTTCTATCAAGACAAACTTGGAAAAGGTGTAAGAGCACTTATGTTCAACATTGCACAC 1674 Query 1731 AAGCTTGATCCATCTCCTTTGCTTTTCGTTAACGATTATCATGTTGAGGACGGGGATGAC 1790 |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| Sbjct 1675 AAGCTTGATCCATCTCCTCTGCTTTTCGTAAACGATTATCATGTTGAAGACGGGGATGAC 1734 Query 1791 CCGCGTTCGTCTCCCGAGAAGTATATAAAACTTGTACTTGATTTGGAAGCTCAAGGAGCA 1850 | |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1735 ACACGTTCGTCCCCCGAGAAGTATATAAAACTTGTTCTTGATTTGGAAGCGCAAGGAGCA 1794 Query 1851 ACT-GTAGGAGGGATTGGGATCCAAGGACATATAGATAGTCCTGTTGGAGCTATTGTTTG 1909 | | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1795 A-TAGTAGGAGGGATTGGGATCCAAGGACATATAGATAGCCCTGTTGGAGCTATTGTTTG 1853 Query 1910 TTCTGCTCTTGATATGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1969 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1854 CTCTGCTCTTGATAAGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1913 Query 1970 CTCTTCGAGTAATGAATATGTTAGGGGAGAGGATCTTGAAGTTATGTTGTGGGAAGCATT 2029 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1914 CTCTTCGAGTAATGAATATGTTAGAGGAGAAGATCTTGAAGTTATGTTGTGGGAAGCATT 1973 Query 2030 TGCTCACCCTTCAGTTGAAGGAATAATGTTATGGGGGTTCTGGGAGCTATCTATGAGTAG 2089 ||| |||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||| Sbjct 1974 TGCCCACCCTGCAGTTGAAGGAATAATGCTATGGGGTTTCTGGGAACTATCTATGAGTAG 2033 Query 2090 AGAGAACGCGAATCTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGAAAAAGATTT-T 2148 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2034 AGAGAACGCGAATTTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGGAAAAGATTTCT 2093 Query 2149 TAGAGGTGAAACAAGAATGGTTATCTCATGCATATGGGATCATCAATGATGAGTCAGAGT 2208 | ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 2094 T-GAGGTGAAAGAAGAATGGTTATCTCATGCATATGGGATCATTAATGATGAATCAGAGT 2152 Query 2209 TCACATTCAGAGGCTACCATGGGACTTATGCCGTCGAAATTTGTACTCCAGCTGGGATTG 2268 ||||||||| |||||| ||||||||||| ||||| ||| |||||||||| |||||||||| Sbjct 2153 TCACATTCAAAGGCTATCATGGGACTTACGCCGTTGAAGTTTGTACTCCGGCTGGGATTG 2212 Query 2269 TTCTCAAAACGTTCGTTGTCGAAAAAGGAGACACTCCACTTGTTATCTCCATTGATCTCT 2328 |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| Sbjct 2213 TTCTCAAAACGTTCGTTGTCGACAAAGGAGACACTCCACTTATTATATCCATTGATCTCT 2272 Query 2329 CTTCtttgtgatgtttgtgt 2348 ||| |||||||||||| ||| Sbjct 2273 CTTGTTTGTGATGTTTTTGT 2292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94844710050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5