BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08170.2
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894928 jgi|Araly1|894928|Al_scaffold_0006_2924 1424 0.0
> Ahg894928 jgi|Araly1|894928|Al_scaffold_0006_2924
Length=1092
Score = 1424 bits (771), Expect = 0.0
Identities = 992/1094 (91%), Gaps = 34/1094 (3%)
Strand=Plus/Plus
Query 180 ATGAAGCTAACGGAC---AACGAAGAGATCACCATGAACGGAACTCGAGAAATGGAGACG 236
||||||||||||||| ||||||||| | || |||||||||||||||||| ||||||||
Sbjct 1 ATGAAGCTAACGGACGATAACGAAGAGGTTACGATGAACGGAACTCGAGAAGTGGAGACG 60
Query 237 ACAGAGCAAGAGACATCGTCGCCGTGTTCGTTAGTAATCGAAGCTTTTCCGGTGAAGAAA 296
| ||| | |||| |||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 61 GCGGAGGAGGAGATTTCGTCGCCGTGTTCGTTAGTGATCGAAGCGTTTCCGGTGAAGAGA 120
Query 297 TCCATTATTGTAGGTTACGCTCTTACATC-AAAGAAGATTAAGAGCTTTTTACAACCAAA 355
|| |||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 121 TCGATTATTGTAGGTTATGCTCTTACATCGAAA-AAGATTAAGAGCTTTTTGCAACCAAA 179
Query 356 ACTCGAAGGTTTAGCTAGGAATAAGGGGATATTATTTGTGGCAATAGATCAGAATAAGCC 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 ACTCGAAGGTTTAGCTAGGAATAAGGGGATATTATTTGTGGCAATAGATCAGAATAGGCC 239
Query 416 ACTTTCAGAGCAGGGTCCGTTTGATATTGTGTTGCATAAGCAAATTGGAAAAGAATGGCG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACTTTCAGAGCAGGGTCCGTTTGATATTGTGTTGCATAAGCAAATTGGAAAAGAATGGCG 299
Query 476 TCGAATTCTCGAGGAATTTAGGCTAGCACATCCAGATGTCACAGTTCTTGATCCTCCAGA 535
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TCGAATTCTTGAGGAATTTAGGCTAGCACATCCAGATGTCACAGTTCTCGATCCTCCAGA 359
Query 536 TGCAATACTACATCTCCGTAATCGTCAGTCAATGCTTCAGTGTGTTGCGGACATGAATCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGCAATACTACATCTCCGTAATCGTCAGTCAATGCTTCAGTGTGTTGCGGACATGAATCT 419
Query 596 GTCTGATAGTAATGGACGCGTTGGTGTGCCCAAGCAATTGGTAATTAAAAAGGATGCATC 655
|||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 420 GTCTGATAGTTATGGACGAGTGGGTGTGCCCAAGCAATTGGTAATTAAAAGGGATGCATC 479
Query 656 TTCAATTCCGGAGGCTGTCAATAATGCTGGTCTGAGACTACCTCTTGTTGCAAAGCCATT 715
||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 480 CTCAATCCCGGAAGCTGTCAATAAAGCTGGGCTGAGACTACCTCTTGTTGCAAAGCCATT 539
Query 716 GGTTGCTGATGGAAGTGCAAAGTCACATGAGCTTTCGCTGGCTTACGATCAACACTCCCT 775
||| |||||||||||||||||||||||||| ||||| |||||||| || || ||| ||||
Sbjct 540 GGTCGCTGATGGAAGTGCAAAGTCACATGAACTTTCTCTGGCTTATGACCAGCACGCCCT 599
Query 776 TCTGAAGCTCGAGCCTCCTCTTGTTCTTCAGGAGTTTGTTAACCATGGAGGTGTTCTTTT 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TCTGAAGCTCGAGCCTCCTCTTGTTCTTCAGGAGTTTGTTAACCATGGTGGTGTTCTTTT 659
Query 836 CAAGGTTTACATTGTTGGGGAGGCTATTAGAGTTGTCCGGCGCTTCTCCCTACCTGATGT 895
||| ||||| ||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct 660 CAAAGTTTATATTGTTGGGGAAGCAATTAGAGTGGTCCGGCGTTTCTCCCTGCCTGATGT 719
Query 896 CTCTAGACGAGAACTCCCCAAATCAGCTGGTGTATTCCGCTTCCCACGGGTCTC-T-TG- 952
|||||||||||||||| || || |||||||||||||| | ||||| |||||||| | ||
Sbjct 720 CTCTAGACGAGAACTCTCCGAAGCAGCTGGTGTATTCAGATTCCCCCGGGTCTCTTGTGC 779
Query 953 T---GCTGCAGCT--TCA-GCTGA--T-GA--TGCAGA-T-CTGGACCCGA-G--C--A- 993
| ||| ||||| | | || || | || | | | | ||| | | | | | |
Sbjct 780 TGCAGCTTCAGCTGATGAGGCAGATTTGGACCCGAACATTGCTGTAAACAATGTTCTTAT 839
Query 994 -----TTGCCGAGCTTCCACCACGTCCTCTGTTGGAGAGACTGGCAAAGGAACTCCGTCG 1048
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCTCGTTGCAGAGCTTCCACCGCGTCCTCTGTTGGAGAGACTGGCAAAGGAACTCCGTCG 899
Query 1049 TGGATTGGGTCTAAGGCTGTTCAATTTAGACATAATTAGAGAGCACGGGACAAGAGATCG 1108
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGATTGGGTCTACGGCTGTTTAATTTAGACATAATTAGAGAGCACGGGACAAGAGATCG 959
Query 1109 GTTTTATGTGATCGACATCAACTATTTCCCAGGGTACGGGAAA-ATGCCAGAGTATGAGC 1167
||||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 960 GTTTTATGTAATTGACATCAACTATTTCCCAGGGTAC-GGAAAGATGCCAGAGTATGAGC 1018
Query 1168 ATGTATTCACTGATTTCTTACTGAGTGTGGTACAAAGCCAATGTAAGAAACGAGCTTTGG 1227
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1019 ATGTATTCACTGATTTCTTACTGAGTGTGGTACAAAGCCAATGCAAGAAACGAGCCTTGG 1078
Query 1228 CAGATCAATACTAA 1241
| ||||||||||||
Sbjct 1079 CCGATCAATACTAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5