BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08180.1
Length=2990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489733 jgi|Araly1|489733|fgenesh2_kg.6__2867__AT4G08180.3 4573 0.0
Ahg482026 jgi|Araly1|482026|fgenesh2_kg.4__1086__AT2G31020.1 1107 0.0
Ahg933629 jgi|Araly1|933629|scaffold_401617.1 1086 0.0
> Ahg489733 jgi|Araly1|489733|fgenesh2_kg.6__2867__AT4G08180.3
Length=2999
Score = 4573 bits (2476), Expect = 0.0
Identities = 2846/3017 (94%), Gaps = 56/3017 (2%)
Strand=Plus/Plus
Query 12 aaaaaaaaaaaaaCTTTGGCCTCTCCGGTGACTCTTCCTTCTTCTGCTACCGAACTTTTC 71
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAATAAAAAAGCTTTGGCCTCTCCGGTGACTCTT-CTTCTTCTGCTACCGAACTTTTC 59
Query 72 GCTTCCTTCTCTGACCAAtttttttCAACAACCTCTCTTCTTCAACAAATTCTC--TTCT 129
|||| ||||||||||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 60 GCTTTCTTCTCTGACCAA---TTTTCAACAACCTCTCTTCTTCTTC--TTTCTCAATTCT 114
Query 130 C-AAATCCTCCAAATCCTCTCTGCCATGAACGCTACTTTCTTCCTCCTCTCCACCACCGT 188
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CTCAATCCT-CAAATCCTCTCTGCCATGAACGCTACTTTCTTCCTCCTCTCCACCACCGT 173
Query 189 -CTCCACCGTCACAATCACCGGATTCAACGGTCTCGATTTCTCATCTTA---G-----AA 239
|||||| |||||||| ||||| |||||| |||||||||||||||| | |
Sbjct 174 GAACCACCG-CACAATCATCGGATCCAACGGAATCGATTTCTCATCTTAGTCGTCTCTCA 232
Query 240 CCACATGCATCCCTTCTGTTGCGTTACAACTGTCTCCGATCACTCTCCTTCGATGCCTCC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 233 CCACATGCATCCCTTCTGTTGCGTTACCACTGTCTCCGATCACTCTCCTTCGATGCCTCC 292
Query 300 GTTACCTGAACCACAACCGCCTCTACCGAAT-TACG-C-C-G------CCG--A----TT 343
||||| ||||||||||||||||||||| || ||| | | | ||| | ||
Sbjct 293 TTTACCGGAACCACAACCGCCTCTACCG-ATACACGCCGCTGCTTCCTCCGCAACGCCTT 351
Query 344 TTGGTTCGGCGAGATCCGAACCGATTATAACTCGATCTGCTTCTCAAAGTTAT-A--ATC 400
||||||| ||||||||||| |||||||| |||||||||||||||| |||||| | |||
Sbjct 352 TTGGTTCCGCGAGATCCGAGCCGATTATTTCTCGATCTGCTTCTCAGAGTTATAATCATC 411
Query 401 ATTCAGGTCAATTCAAT---AA-C--AATCTTATTCATAGTCTCTCGTTTAATCATCACC 454
||||||||||||| ||| || | ||||||||||||||||| |||||| | ||||||
Sbjct 412 ATTCAGGTCAATTGAATAACAATCAGAATCTTATTCATAGTCTTTCGTTT-A--ATCACC 468
Query 455 AGAGTGATGTAACGGATCGATTGGGGCAACGCGTTTTAGCTTTGCCGGCGGCGGTTAGAG 514
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGAGTGATGTCGCCAATCGATTGGGGCAACGCGTTTTAGCTTTGCCGGCGGCGGTTAGAG 528
Query 515 AACCACCGGTTGATGTTAAGATTAACGATATCGTTGGGAATGGAATTGCTGGGATTTTGT 574
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AACCTCCGGTTGATGTTAAGATTAACGATATCGTTGGGAATGGAATTGCTGGGATTTTGT 588
Query 575 ATAAGTGGGTGAATTATGGTAGAGGATGGAGACCTAGGTGGTTTGTTTTGCAAGATGGTG 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATAAGTGGGTGAATTATGGTAGAGGATGGAGACCTAGGTGGTTTGTTTTGCAAGATGGTG 648
Query 635 TTCTTTCTTATTATAAGATTCATGGACCTGATAAGATCTTTGTTAGTCCTGAAACTGAGA 694
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 649 TGCTTTCGTATTATAAGATTCATGGACCTGATAAGATCTTTGTTAGTCCTGAAACTGAAA 708
Query 695 AAGGATCTAAAGTCATTGGAGATGAGTCTGCTCGTATGATCTCTAGGCATAATCGCCGTG 754
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 709 AAGGATCTAAAGTGATTGGAGATGAGTCTGCTCGTATGATCTCTAGGCATCATCGCCGTG 768
Query 755 GCGGTAGCAGTAGTAGTTGCCAGCTTCGTCGCAAGCCATTCGGAGAAGTCCATCTCAAGG 814
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 769 GCGGAAGCAGTAGTAGTTGCCAGCTTCGTCGCAAGCCATTTGGAGAAGTCCATCTTAAGG 828
Query 815 TTTCTTCAGTTAGAGAGAGTAGATCAGATGATAAGAGGTTTTCCATTTTTACTGGTACCA 874
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 829 TTTCTTCAGTTAGGGAGAGTAGATCAGATGATAAGAGGTTTTCCATTTTTACTGGCACCA 888
Query 875 AGAGGCTTCATTTGCGTGCGGAGACGCGAGAGGACCGAACAACTTGGGTTGAGGCTTTAC 934
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 889 AGAGGCTTCACTTGCGTGCAGAGACGCGAGAGGACCGAACGACTTGGGTTGAGGCTTTAC 948
Query 935 AAGCTGTTAAAGATATGTTTCCAAGGATGTCTAATAGTGAGTTGATGGCTCCGACTAACA 994
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 949 AAGCTGTTAAAGATATGTTTCCAAGGATGTCTAATAGTGAATTGATGGCTCCGACTAACA 1008
Query 995 ATTTGGCTATGTCGACGGAGAAGATTAGGTTAAGGTTGATTGAGGAAGGAGTAAGTGAGT 1054
||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 1009 ATTTGGCCATGTCGACGGAGAAGCTTAGGCTAAGGTTGATTGAGGAAGGAGTTAGTGAGT 1068
Query 1055 TAGCTATTCAGGACTGTGAGCAAATTATGAAGTCTGAGTTCTCAGCACTTCAGAGCCAGC 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAGCTATTCAGGACTGTGAGCAAATTATGAAGTCTGAGTTCTCAGCACTTCAGAGCCAGC 1128
Query 1115 TGGTGCTTCTTAAACAGAAGCAGTGGCTTCTCATTGATACTCTTAGGCAGTTGGAGACAG 1174
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TGGTGCTTCTCAAGCAGAAGCAGTGGCTTCTCATTGATACTCTTAGGCAGTTGGAGACAG 1188
Query 1175 AAAAGGTAGATCTTGAGAACACAGTTGTAGATGAAAGTCAAAGACAGGCTGATAATGGAT 1234
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1189 AAAAGGTAGATCTGGAGAACACAGTTGTAGATGAGAGTCAAAGACAGGCTGATAATGGAT 1248
Query 1235 GTTCCGGTGAATTAAGACACGAGAAGTTCAGTGAAGGCACTGCCACTGAGTCTGATGATG 1294
||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1249 GTTCCAGTGAATTAAGACATGAGAAGTTCAGTGAAGGGACTGCCACTGAATCTGATGATG 1308
Query 1295 ATAATGAACGAGGTGATGCCGCCGAGGAGGAATTTGATGAGGAAGAAAATACCTTTTTTG 1354
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATAATGAACGCGGTGATGCCGCCGAGGAGGAATTTGATGAGGAAGAAAATACCTTTTTTG 1368
Query 1355 ATACACGTGATTTTCTTTCTTCAAGTTCTTTCAAGAGTAGTGGTTCTGGTTTTCGTACAT 1414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1369 ATACACGTGATTTTCTTTCTTCAAGTTCTTTCAAGAGTAGTGGTTCTGGTTTTCGTACTT 1428
Query 1415 CATCATTTTCGTCCGATGAAGATGGCTTTGAGTCTGAAGATGATATTGATCCTTCCATCA 1474
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1429 CATCATTTTCTTCCGATGAAGATGGCTTCGAGTCAGAAGATGATATTGATCCTTCCATCA 1488
Query 1475 AGTCTATTGGATGCAATTATCCTCGCGTCAAAAGGAGGAAGAATTTACCTGATCCGGTTG 1534
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AGTCTATTGGATGCAACTATCCTCGCGTCAAAAGGAGGAAGAATTTACCTGATCCGGTTG 1548
Query 1535 AAAAAGAGAAAAGTGTTAGCCTTTGGTCAATGATCAAAGACAATATAGGGAAGGATCTCA 1594
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1549 AAAAAGAGAAAAGTGTTAGCCTTTGGTCAATGATCAAAGACAATATAGGCAAGGATCTAA 1608
Query 1595 CAAAAGTCTGTCTTCCTGTTTACTTCAACGAGCCACTTTCTTCTTTACAGAAATGTTTTG 1654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1609 CAAAAGTCTGTCTTCCTGTTTACTTCAACGAGCCACTATCTTCTTTACAGAAATGTTTTG 1668
Query 1655 AGGATTTGGAATATTCGTACCTTCTTGACCGAGCATTTGAATATGGCAAAAGGGGAAATA 1714
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1669 AGGATTTGGAATATTCATACCTTCTTGACCGTGCATTTGAATATGGCAAAAGGGGAAATA 1728
Query 1715 GCCTCATGAGGATACTTAATGTAGCTGCTTTTGCTGTATCTGGGTATGCATCAACTGAAG 1774
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1729 GCCTCATGAGGATTCTCAATGTAGCTGCTTTTGCTGTATCTGGGTATGCATCAACCGAAG 1788
Query 1775 GAAGAATTTGCAAACCTTTTAATCCATTGTTAGGTGAAACATACGAGGCAGACTATCCAG 1834
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 GAAGAATCTGCAAACCTTTTAATCCATTGTTAGGTGAAACATACGAGGCAGACTATCCAG 1848
Query 1835 ACAAAGGCCTTCGAtttttttCAGAAAAGGTCAGTCATCATCCTATGGTTGTCGCATGCC 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 ACAAAGGCCTTCGATTTTTTTCAGAAAAGGTCAGTCATCATCCTATGGTTGTCGCATGCC 1908
Query 1895 ATTGTGATGGCACCGGATGGAAATTCTGGGGAGACAGCAATCTTAGGAGCAAATTCTGGG 1954
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 ATTGTGATGGCACGGGATGGAAATTCTGGGGAGACAGCAATCTTAGGAGCAAATTCTGGG 1968
Query 1955 GTCGATCTATTCAGCTTGATCCTGTTGGTGTATTGACTTTGCAATTTGATGATGGAGAAA 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GTCGATCTATTCAGCTTGATCCTGTTGGTGTATTGACTTTGCAATTTGATGATGGAGAAA 2028
Query 2015 TCCTTCAGTGGAGTAAGGTGACTACATCAATATACAATCTCATACTTGGTAAACTATACT 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2029 TCCTTCAGTGGAGTAAGGTGACTACATCAATATACAATCTCATACTTGGTAAACTGTACT 2088
Query 2075 GTGATCACTATGGTACTATGCGTATTGAGGGTAGTGCAGAATACTCATGTAAACTTAAAT 2134
|||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2089 GTGATCACTACGGTACAATGCGTATTGAGGGCAGTGCTGAATACTCATGTAAACTTAAAT 2148
Query 2135 TCAAGGAGCAGTCCATCATAGACCGAAATCCTCATCAGGTTCATGGTATAGTTCAAAACA 2194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2149 TCAAGGAGCAGTCCATCATAGACCGAAATCCTCATCAGGTTCATGGTATAGTTCAAGACA 2208
Query 2195 AGAGTGGGAAGACAGTGGCAACTATGTTTGGGAAATGGGATGAGAGCATACACTTTGTGA 2254
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2209 AGAGTGGGAAGACAGTGGCAACGATGTTTGGGAAATGGGATGAGAGCATGCACTTTGTGA 2268
Query 2255 CGGGTGATTGTTCTGGAAAAGGGAAATTGAGTGAAGATATGTCAGGAGCTCAACTTCTCT 2314
|||||||||||||||| || |||||| |||||||| ||||||||||||||||||||| |
Sbjct 2269 CGGGTGATTGTTCTGGGAAGGGGAAACAGAGTGAAGCTATGTCAGGAGCTCAACTTCTTT 2328
Query 2315 GGAAACGGAGCAAACCTCCTGGAAACGCAACAAAGTATAATCTAACACGTTTTGCAATCA 2374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 GGAAACGGAGCAAACCTCCTGGAAACGCAACAAAGTATAATCTAACACGTTTTGCAATCA 2388
Query 2375 CATTGAATGAGCTTACACCTGGGCTTAAGGAGAGGCTGCCACCAACGGATTCAAGGCTGC 2434
| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2389 CGTTGAATGAGCTTACGCCTGGGCTTAAGGAGAGCCTTCCACCAACGGATTCAAGGCTGC 2448
Query 2435 GACCGGACCAGAGGTATCTCGAGAACGGAGAGTTTGAAATGGCCAACACAGAAAAGTTGC 2494
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2449 GACCGGACCAGAGGTATCTCGAGAACGGAGAGTTTGAAATGGCCAACACAGAGAAGTTGC 2508
Query 2495 GGCTGGAACAGCGACAACGTCAGGCGAGGAAGATGCAGGAGAGAGGATGGAAGCCGAGGT 2554
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2509 GGCTGGAACAGCGACAACGTCAGGCTAGGAAGATGCAGGAGAGAGGATGGAAGCCGAGGT 2568
Query 2555 GGTTCATGAAGGAGAAAGGAAGCGAGTCTTACCGATACAAAGGAGGTTACTGGGAAGCCC 2614
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2569 GGTTCATGAAGGAGAAAGGTAGCGAGTCATACCGATACAAAGGAGGTTACTGGGAAGCCC 2628
Query 2615 GAGAGGATGGATCATGGGTAGACTGTCCAGACATCTTCGGCCACATCGATTCCGATCAAC 2674
|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2629 GAGAGGATGGATTATGGGTAGACTGTCCAGATATCTTCGGCCATATCGATTCCGATCAAC 2688
Query 2675 AAATGATAGAGTAAA-ACGAAATTACCATTCACATCGATTCTTGAATCACGAAGTATTAA 2733
||||||||||||||| | ||||||| | ||||||||||||| ||||||||||||||||
Sbjct 2689 AAATGATAGAGTAAAGA-GAAATTATAAGCCACATCGATTCTTAAATCACGAAGTATTAA 2747
Query 2734 attcctcctatcttcctttctaattacgttttcgtttcttctattatttttcttcctttt 2793
||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 2748 ATTCCTCATATCATCCTTTCTAATTACGTTTTGGTTTCTTCTATTATTTTCCTTTTTTTT 2807
Query 2794 tcatctcattattctttactcgccatttcACGTTACAGGACCTTTACCTTTAGTCTCttt 2853
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 2808 TCATCTCATTATTCTTTACTCGCCATTTCACCTTACAGGACATTTACCTTTAGTCT-TTT 2866
Query 2854 ttttCTTTTCTTCTTTGTATATCATGAAATAGTTTCGCGTCATACCCAAATTTGTCCAAT 2913
|||||||||||| | |||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 2867 TTTTCTTTTCTT-T--GTATATCATGAAATAGTT-CGCCTCATACGCAAATTTGTCCAAT 2922
Query 2914 CCTTGTAAGTGGAAGAATGTGCTCCAAATCATACATGGCTATATTGAATAAGCAAAAGGA 2973
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2923 CCTTGTAAGTGGAAGAATGTGCTCTTAATCATACATGGCTATATTGAATAAGCAAAAGGA 2982
Query 2974 AGAAAGTTACTTATGTG 2990
|||||||||| ||||||
Sbjct 2983 AGAAAGTTACATATGTG 2999
> Ahg482026 jgi|Araly1|482026|fgenesh2_kg.4__1086__AT2G31020.1
Length=2385
Score = 1107 bits (599), Expect = 0.0
Identities = 1090/1322 (82%), Gaps = 53/1322 (4%)
Strand=Plus/Plus
Query 1352 TTGATACACGTGATTTTCTTTCTTCAAGTTCTTTCAAGAGTAGTGGTTCTGGTTTTCGTA 1411
|||||||| |||| | || |||||||||||| ||||| |||| ||| || | ||||||||
Sbjct 962 TTGATACATGTGACTCTCATTCTTCAAGTTCATTCAAAAGTATTGGATCCGTTTTTCGTA 1021
Query 1412 CATCATCA-T-T-TTC-G-T-CCGAT--GA-AG---ATGGCTTTGAGTCTGAAGATGATA 1459
|||||||| | | ||| | | ||| || | |||| |||||||| |||||||||
Sbjct 1022 CATCATCATTCTCTTCAGATGATGATGGGATTGCTAATGGTTTTGAGTCAGAAGATGATG 1081
Query 1460 TTGATCCTTCCATCAAGTCTATTGGATGCAATTATCCTCGCGTCAAAAGGA-GGAAGAAT 1518
|||||||||| |||||||||||||||| || ||||||| ||| ||| || | |||||
Sbjct 1082 TTGATCCTTCTATCAAGTCTATTGGATTTAACTATCCTCATGTC-AAACGACGAAAGAAG 1140
Query 1519 TTACCTGATCCGGTTGAAAAAGAGAAAAGTGTTAGCCTTTGGTCAATGATCAAAGACAAT 1578
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTACCTGAACCGGTTGAAAAAGAGAAAAGTGTTAGCCTTTGGTCAATGATCAAAGACAAC 1200
Query 1579 ATAGGGAAGGATCTCACAAAAGTCTGTCTTCCTGTTTACTTCAACGAGCCACTT-TCTTC 1637
|| || ||||||||||||||||| |||||||||||||||||||| ||||| || |||||
Sbjct 1201 ATTGGCAAGGATCTCACAAAAGTTTGTCTTCCTGTTTACTTCAATGAGCCT-TTATCTTC 1259
Query 1638 TTTACAGAAATGTTTTGAGGATTTGGAATATTCGTACCTTCTTGACCGAGCATTTGAATA 1697
| |||| ||||| ||||| |||||||| ||||| || |||||||| | ||||| |||||
Sbjct 1260 TCTACAAAAATGCTTTGAAGATTTGGAGTATTCATATCTTCTTGATCAAGCATCTGAATG 1319
Query 1698 TGGCAAAAGGGGAAATAGCCTCATGAGGATACTTAATGTAGCTGCTTTTGCTGTATCTGG 1757
|| |||| ||| |||| |||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 1320 GGGGAAAAAGGGCAATAACCTCATGAGGATTCTGAATGTAGCTGCATTTGCTGTATCCGG 1379
Query 1758 GTATGCATCAACTGAAGGAAGAATTTGCAAACCTTTTAATCCATTGTTAGGTGAAACATA 1817
||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1380 TTATGCATCAACCGAAGGAAGAATATGCAAACCTTTTAATCCAATGTTAGGTGAAACATA 1439
Query 1818 CGAGGCAGACTATCCAGACAAAGGCCTTCGAtttttttCAGAAAAGGTCAGTCATCATCC 1877
||||| || ||||| || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 1440 TGAGGCTGATTATCCCGATAAAGGCCTTCGATTTTTCTCGGAAAAGGTGAGTCATCATCC 1499
Query 1878 TATGGTTGTCGCATGCCATTGTGATGGCACCGGATGGAAATTCTGGGGAGACAGCAATCT 1937
|||| |||| |||||||||||||||||||||||||||||||| |||||||| || ||| |
Sbjct 1500 TATGATTGTGGCATGCCATTGTGATGGCACCGGATGGAAATTTTGGGGAGATAGTAAT-T 1558
Query 1938 TAGGA-GCAAATTCTGGGGTCGATCTATTCAGCTTGATCCTGTTGGTGTATTGACTTTGC 1996
|| | ||||||| ||||||||||| ||||||||||||||| ||||| | ||||||||||
Sbjct 1559 TAAAAAGCAAATTTTGGGGTCGATCAATTCAGCTTGATCCTATTGGTTTGTTGACTTTGC 1618
Query 1997 AATTTGATGATGGAGAAATCCTTCAGTGGAGTAAGGTGACTACATCAATATACAATCTCA 2056
||||||||||||| ||||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 1619 AATTTGATGATGGTGAAATTGTACAATGGAGCAAGGTGACTACATCAATATACAATCTCA 1678
Query 2057 TACTTGGTAAACTATACTGTGATCACTATGGTACTATGCGTATTGAGGGTAGTG-CAGAA 2115
||||||||||| | || |||||||||||||| || ||||| ||||| |||| | | |||
Sbjct 1679 TACTTGGTAAATTGTATTGTGATCACTATGGGACAATGCGGATTGAAGGTAACGGC-GAA 1737
Query 2116 TACTCATGTAAACTTAAATTCAAGGAGCAGTCCATCATAGACCGAAATCCTCATCAGGTT 2175
|||||||||||||||||||| ||||| ||||| || || || ||||||||||||| |||
Sbjct 1738 TACTCATGTAAACTTAAATTTAAGGAACAGTCGATGATCGATAGAAATCCTCATCAAGTT 1797
Query 2176 CATGGTATAGTTCAAAACAAGAGTGGGAAGACAGTGGC-AACTATGTTTGGGAAATGGGA 2234
|| |||||||| || |||| | ||| || |||||||| || | ||||||| ||||||||
Sbjct 1798 CAAGGTATAGTAGAAGACAAAAATGGAAAAACAGTGGCTAAGT-TGTTTGGAAAATGGGA 1856
Query 2235 TGAGAGCATACACTTTGTGACGGGTGATTGTTCTGGAAAAGGGAAATTGAGTGAAGATAT 2294
|||||| || |||| ||||| || | | | | || || || | ||||| |
Sbjct 1857 TGAGAGTATGCACTATGTGATGG-TCAAT---C---AA--GG-AAG--G-GTGAA--T-- 1899
Query 2295 GTCAGGAGCTCAACTTCTCTGGAAACGGAGCAAACCTCCTGGAAACGCAACAAAGTATAA 2354
| | | |||| ||| | |||||||| | ||||||||| | |||| | |||||||||||
Sbjct 1900 G--A--ATCTCATCTTTTGTGGAAACGAAACAAACCTCCCGAAAACCCGACAAAGTATAA 1955
Query 2355 TCTAACACGTTTTGCAATCACATTGAATGAGCTTACACCTGGGCTTAA-GGAGAGGCTGC 2413
||||||||| |||| |||||||| || ||||| || ||||| |||| ||||| | |||
Sbjct 1956 TCTAACACGGTTTGGGATCACATTAAACGAGCTAACGCCTGGT-TTAAAGGAGAAGTTGC 2014
Query 2414 CACCAACGGATTCAAGGCTGCGACCGGACCAGAGGTATCTCGAGAACGGAGAGTTTGAAA 2473
||||||| |||||||| || |||| ||||| |||||| | ||||| |||||||||||||
Sbjct 2015 CACCAACAGATTCAAGACTTAGACCAGACCAAAGGTATTTGGAGAAGGGAGAGTTTGAAA 2074
Query 2474 TGGCCAACACAGAAAAGTTGCGGCTGGAACAGCGACAACGTCAGGCGAG-GAAGATGCAG 2532
||| || | || |||||| || ||||||| ||||| | |||||||| || ||||||
Sbjct 2075 TGGGAAATGCGGAGAAGTTGAGGTTGGAACAAAGACAAAGACAGGCGAGAGA-GATGCAA 2133
Query 2533 GAGAGAGGATGGAAGCCGAGGTGGTTCATGAAG-GAGAAAGGAAGCGAGTCTTACCGATA 2591
|||||||| ||||| || | |||||| | ||| ||||||||||| ||| |||| ||||
Sbjct 2134 GAGAGAGGTTGGAAACCAAAGTGGTTTA-GAAAAGAGAAAGGAAGTGAGACTTATAGATA 2192
Query 2592 CAAAGGAGGTTACTGGGAAGCCCGAGAGGATGGATCAT-GGG-TAGACTGTCCAGACATC 2649
| |||||||| |||||||| ||||| ||| || | ||| | || ||||| ||||||
Sbjct 2193 CGTTGGAGGTTATTGGGAAGCTCGAGATTCTGG-TCGTTGGGAT-GATTGTCCTGACATC 2250
Query 2650 TT 2651
||
Sbjct 2251 TT 2252
> Ahg933629 jgi|Araly1|933629|scaffold_401617.1
Length=1507
Score = 1086 bits (588), Expect = 0.0
Identities = 1022/1228 (83%), Gaps = 43/1228 (4%)
Strand=Plus/Plus
Query 1435 GATGGCTTTGAGTCTGAAGATGATATTGATCCTTCCATCAAGTCTATTGGATGC-AATTA 1493
||||| |||||||| || |||||| |||||||||| |||||| ||||||||| | || ||
Sbjct 264 GATGGTTTTGAGTCAGAGGATGATGTTGATCCTTCTATCAAGACTATTGGAT-CTAACTA 322
Query 1494 TCCTCGCGTCAAAAGGA-GGAAGAATTTACCTGATCCGGTTGAAAAAGAGAAAAGTGTTA 1552
||||| ||| ||| || | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 323 TCCTCATGTC-AAACGACGAAAGAAGTTACCTGATCCGGTTGAAAAAGAGAAAAGTGTTA 381
Query 1553 GCCTTTGGTCAATGATCAAAGACAATATAGGGAAGGATCTCACAAAAGTCTGTCTTCCTG 1612
||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||
Sbjct 382 GCCTTTGGTCAATGATCAAAGACAACATTGGCAAGGATCTCACAAAAGTTTGTCTTCCTG 441
Query 1613 TTTACTTCAACGAGCCACTT-TCTTCTTTACAGAAATGTTTTGAGGATTTGGAATATTCG 1671
|||||||||| ||||| || |||||| |||| ||||| ||||| |||||||| |||||
Sbjct 442 TTTACTTCAATGAGCCT-TTATCTTCTCTACAAAAATGCTTTGAAGATTTGGAGTATTCA 500
Query 1672 TACCTTCTTGACCGAGCATTTGAATATGGCAAAAGGGGAAATAGCCTCATGAGGATACTT 1731
|| |||||||| | ||||| ||||| || |||| ||| |||| |||||||||||| ||
Sbjct 501 TATCTTCTTGATCAAGCATCTGAATGGGGGAAAAAGGGCAATAACCTCATGAGGATTCTG 560
Query 1732 AATGTAGCTGCTTTTGCTGTATCTGGGTATGCATCAACTGAAGGAAGAATTTGCAAACCT 1791
||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 561 AATGTAGCTGCATTTGCTGTATCCGGTTATGCATCAACCGAAGGAAGAATATGCAAACCT 620
Query 1792 TTTAATCCATTGTTAGGTGAAACATACGAGGCAGACTATCCAGACAAAGGCCTTCGAttt 1851
||||||||| |||||||||||||||| ||||| || ||||| || |||||||||||||||
Sbjct 621 TTTAATCCAATGTTAGGTGAAACATATGAGGCTGATTATCCCGATAAAGGCCTTCGATTT 680
Query 1852 ttttCAGAAAAGGTCAGTCATCATCCTATGGTTGTCGCATGCCATTGTGATGGCACCGGA 1911
|| || |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 681 TTCTCGGAAAAGGTGAGTCATCATCCTATGATTGTGGCATGCCATTGTGATGGCACCGGA 740
Query 1912 TGGAAATTCTGGGGAGACAGCAATCTTAGGA-GCAAATTCTGGGGTCGATCTATTCAGCT 1970
|||||||| |||||||| || ||| ||| | ||||||| ||||||||||| ||||||||
Sbjct 741 TGGAAATTTTGGGGAGATAGTAAT-TTAAAAAGCAAATTTTGGGGTCGATCAATTCAGCT 799
Query 1971 TGATCCTGTTGGTGTATTGACTTTGCAATTTGATGATGGAGAAATCCTTCAGTGGAGTAA 2030
||||||| ||||| | ||||||||||||||||||||||| ||||| | || ||||| ||
Sbjct 800 TGATCCTATTGGTTTGTTGACTTTGCAATTTGATGATGGTGAAATTGTACAATGGAGCAA 859
Query 2031 GGTGACTACATCAATATACAATCTCATACTTGGTAAACTATACTGTGATCACTATGGTAC 2090
||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||
Sbjct 860 GGTGACTACATCAATATACAATCTCATACTTGGTAAATTGTATTGTGATCACTATGGGAC 919
Query 2091 TATGCGTATTGAGGGTAGTG-CAGAATACTCATGTAAACTTAAATTCAAGGAGCAGTCCA 2149
||||| ||||| |||| || | ||||||||||||||||||||||||||||| ||||| |
Sbjct 920 AATGCGGATTGAAGGTAATGGC-GAATACTCATGTAAACTTAAATTCAAGGAACAGTCGA 978
Query 2150 TCATAGACCGAAATCCTCATCAGGTTCATGGTATAGTTCAAAACAAGAGTGGGAAGACAG 2209
| || || ||||||||||||| ||||| |||||||| || |||| | ||| || ||||
Sbjct 979 TGATCGATAGAAATCCTCATCAAGTTCAAGGTATAGTAGAAGACAAAAATGGAAAAACAG 1038
Query 2210 TGGC-AACTATGTTTGGGAAATGGGATGAGAGCATACACTTTGTGACGGGTGATTGTTCT 2268
|||| || | ||||||| |||||||||||||| || | || ||||| || | | | |
Sbjct 1039 TGGCTAAGT-TGTTTGGAAAATGGGATGAGAGTATGCTCTATGTGATGG-TCAAT---C- 1092
Query 2269 GGAAAAGGGAAATTGAGTGAAGATATGTCAGGAGCTCAACTTCTCTGGAAACGGAGCAAA 2328
|| || ||| | ||||| | | | | |||| ||| | |||||||| | ||||
Sbjct 1093 --AA--GG-AAA--G-GTGAA--T--G--A--ATCTCATCTTTTGTGGAAACGAAACAAA 1136
Query 2329 CCTCCTGGAAACGCAACAAAGTATAATCTAACACGTTTTGCAATCACATTGAATGAGCTT 2388
||||| | |||| | |||||||||||||||||||| |||| |||||||| || |||||
Sbjct 1137 CCTCCCGAAAACCCGACAAAGTATAATCTAACACGGTTTGGGATCACATTAAACGAGCTA 1196
Query 2389 ACACCTGGGCTTAA-GGAGAGGCTGCCACCAACGGATTCAAGGCTGCGACCGGACCAGAG 2447
|| ||||| |||| ||||| | |||||||||| |||||||| || |||| ||||| ||
Sbjct 1197 ACGCCTGGT-TTAAAGGAGAAGTTGCCACCAACAGATTCAAGACTTAGACCAGACCAAAG 1255
Query 2448 GTATCTCGAGAACGGAGAGTTTGAAATGGCCAACACAGAAAAGTTGCGGCTGGAACAGCG 2507
|||| | ||||| |||||||||||||||| || | || |||||| || ||||||| |
Sbjct 1256 GTATTTGGAGAAGGGAGAGTTTGAAATGGGAAATGCGGAGAAGTTGAGGTTGGAACAAAG 1315
Query 2508 ACAACGTCAGGCGAG-GAAGATGCAGGAGAGAGGATGGAAGCCGAGGTGGTTCATGAAG- 2565
|||| | |||||||| || |||||| |||||||| ||||| || | |||||| | |||
Sbjct 1316 ACAAAGACAGGCGAGAGA-GATGCAAGAGAGAGGTTGGAAACCAAAGTGGTTTA-GAAAA 1373
Query 2566 GAGAAAGGAAGCGAGTCTTACCGATACAAAGGAGGTTACTGGGAAGCCCGAGAGGATGGA 2625
||||||||||| ||| |||| ||||| |||||||| |||||||| ||||| |||
Sbjct 1374 GAGAAAGGAAGTGAGACTTATAGATACGTTGGAGGTTATTGGGAAGCTCGAGATTCTGG- 1432
Query 2626 TCAT-GGG-TAGACTGTCCAGACATCTT 2651
|| | ||| | || ||||| ||||||||
Sbjct 1433 TCGTTGGGAT-GATTGTCCTGACATCTT 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112899486180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5