BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08210.1
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942596 jgi|Araly1|942596|scaffold_603140.1 2985 0.0
> Ahg942596 jgi|Araly1|942596|scaffold_603140.1
Length=2109
Score = 2985 bits (1616), Expect = 0.0
Identities = 1919/2065 (93%), Gaps = 22/2065 (1%)
Strand=Plus/Plus
Query 1 ATGGTTATGGACTTGAAGCTTATAGCAGCAGGATTACGTCATTGTGGGAAAGTACAAGCC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 23 ATGGCTATGGACTTGAAGCTTATAGCAGCAGGATTACGTCATTGTGGGAAAATACAAGCT 82
Query 61 TTTAAGCGTGGAGAATCAATTCAAGCTCATGTAATCAAGCAAGGGATCTCTCAAAATGTG 120
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 83 TTTAAGCGTGGAGAATCAATTCAAGCTCATATAATCAAACAAGGGATCTCTCAAAATGTG 142
Query 121 TTTATAGCGAATAACGTGATCTCAATGTATGTGGATTTCAGGTTGTTGAGTGATGCACAT 180
||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 143 TTTCTGGCGAATAATGTGATCTCAATGTATGTTGATTTTAGGTTGTTGAGTGATGCACAT 202
Query 181 AAAGTGTTCGATGAAATGTCTGAGAGAAATATTGTAACTTGGACAACGATGGTTTCTGGG 240
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 203 AAAGTGTTCGATGAAATGACTGAGAGAAATATTGTCACTTGGACTACGATGGTTTCTGGG 262
Query 241 TATACGAGTGATGGAAAACCCAATAAAGCTATTGAGTTATACAGAAGAATGTTAGACTC- 299
||||| ||||||||||||||| ||| |||||||||||||||||||||||| | || ||
Sbjct 263 TATACTTGTGATGGAAAACCCAGTAAGGCTATTGAGTTATACAGAAGAATGGTGGAATCT 322
Query 300 CGAAGAAGAAGCGGCGAACGAGTTTATGTATTCTGCGGTTTTGAAAGCTTGTGGGTTAGT 359
| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 323 C-AAGAAGAAGCGGCTAACGAGTTTATGTATTCTGCGGTTTTGAAAGCGTGTGGGTTAGT 381
Query 360 GGGTGATATTCAGCTGGGGATTTTGGTTTATGAAAGAATTGGTAAAGAGAAT-TTGAGAG 418
||||||||||||| |||||| ||||||||||||||||||||||||||||||| || | ||
Sbjct 382 GGGTGATATTCAGTTGGGGAGTTTGGTTTATGAAAGAATTGGTAAAGAGAATCTT-AAAG 440
Query 419 GTGATGTTGTTTTGATGAATAGTGTTGTTGATATGTATGTTAAGAATGGGAGACTTA-TC 477
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 441 GTGATGTTGTTTTGATGAATAGTGTTGTAGATATGTTTGTTAAGAATGGGAGACTTAGT- 499
Query 478 GAAGCTAATAGCAGTTTTAAGGAGATTTTACGGCCTAGTTCGACTTCGTGGAACACTCTT 537
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 500 GAAGCTAATAGCTCTTTTAAGGAGATTTTACGGCCTAATTCGACTTCGTGGAACACTCTT 559
Query 538 ATTTCTGGTTATTGTAAAGCTGGTTTGATGGATGAAGCGGTTACTTTGTTCCATCGAATG 597
|||||||||||||||||||| ||| || | || || ||||||| |||||| |||||||
Sbjct 560 ATTTCTGGTTATTGTAAAGCAGGTATGGTTGAGGAGGCGGTTAGTTTGTTTAATCGAATT 619
Query 598 CCGCAGCCAAATGTCGTGTCTTGGAACTGTTTGATATCGGGATTTGTCGATAAGGGTAGT 657
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 620 CCGCAGCCAAATATTGTGTCTTGGAACTGTTTGATCTCGGGATTTGTCGATAAGGGTAGT 679
Query 658 CCTCGTGCGTTGGAGTTTTTAGTTAGGATGCAGAGAGAAGGACTTGTGTTAGACGGTTTT 717
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 680 CCTCGTGCGTTGGAGTTTCTGGTTAGGATGCAGAGAGAAGGACTTGTGTTAGACGGTTTT 739
Query 718 GCTTTACCATGTGGTCTTAAAGCTTGTAGTTTTGGTGGCTTATTAACAATGGGTAAACAG 777
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 740 GCTTTACCTTGTGGTCTTAAAGCTTGCAGTTTTGGTGGCTTATTAACAATGGGTAAACAA 799
Query 778 CTGCATTGTTGTGTCGTAAAGTCGGGTCTAGAGTCTAGCCCGTTCGCAATATCTGCTCTT 837
|||||| | |||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 800 CTGCATGGCTGTGTCGTAAAGTCGGGTCTGGAGTCTAGCCCGTTCGCACTCTCTGCTCTT 859
Query 838 ATTGATATGTACTCGAACTGTGGCTCTCTAATAT-ATGCAGCTGATGTTTTTCATCAGGA 896
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 860 ATTGATATGTACTCGAACTGTGGCTCTCTAA-GTGATGCAGCTGATGTTTTTCATCAGGA 918
Query 897 AAAACTGGCCGT-TAATAGTAGTGTCGCGGTTTGGAATTCTATGCTCTCTGGATTTTTGA 955
||| | |||| | | || || ||| ||||||||||||||||||||||||||||||||||
Sbjct 919 AAAGCCGGCCCTCT-GTAATACTGTTGCGGTTTGGAATTCTATGCTCTCTGGATTTTTGA 977
Query 956 TAAATGAGGAGAATGAAGCAGCATTATGGCTGCTTTTGCAGATATATC-AGTCAGATTTG 1014
| || || ||||||||||| |||||| |||||||||||||||| || | |||||||||||
Sbjct 978 TTAACGAAGAGAATGAAGCGGCATTAGGGCTGCTTTTGCAGATGTA-CAAGTCAGATTTG 1036
Query 1015 TGTTTTGATTCCTACACTCTAAGTGGTGCCTTAAAGATATGTATCAAC-TATGTCAACTT 1073
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1037 TGTTTTGATTCCTACACTCTAAGTGGTGCCTTAAAGATATGCATCAACTTA-GTCAACTT 1095
Query 1074 AAGACTCGGGCTTCAAGTACATAGTTTAGTTGTAGTAAGTGGTTATGAGTTGGATTACAT 1133
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 AAGACTCGGGCTTCAGGTACATAGTTTAGTTGTAGTCAGTGGTTATGAGTTGGATTACAT 1155
Query 1134 CGTAGGAAGTATTCTTGTTGATTTACATGCAAATGTTGGGAATATACAAGATGCACATAA 1193
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1156 TGTAGGAAGCATTCTTGTTGATTTACACGCAAACGTTGGGAATATACAAGAAGCACATAA 1215
Query 1194 ACTGTTTCATAGGCTTCCAAATAAAGATATCATCGCTTTCTCTGGCTTGATACGAGGCTG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1216 GCTGTTTCATAGGCTTCCAAATAAAGATATCATCGCTTTCTCTGGCTTGATAAGAGGCTG 1275
Query 1254 TGTGAAATCAGGGTTCAATTCTTTAGCATTTTATCTGTTCAGGGAATTAATCAAGTTGGG 1313
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1276 TGTGAAATCAGGATTCAATTCTTCAGCATTTTATCTGTTCAGGGAATTAATCAAGTTGGG 1335
Query 1314 ACTCGATGCTGACCAGTTCATCGTCTCAAATATTCTTAAAGTTTGTTCAAGTTTAGCATC 1373
||||||||| |||||||| |||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 1336 ACTCGATGCCGACCAGTTTATCGTCTCAAGTATTCTCAAAGTCTGTTCAAGTTTAGCGTC 1395
Query 1374 TCTTGGATGGGGTAAGCAAATTCATGGGTTGTGTATAAAGAAAGGTTATGAATCAGAACC 1433
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1396 TCTTGGATGTGGTAAGCAAATTCATGGGTTGTGTATAAAGAAAGGTTACCAATCAGAACC 1455
Query 1434 TGTCACAGCGACAGCACTAGTAGATATGTATGTAAAATGTGGTGAGATAGATAATGGTGT 1493
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1456 TGTTACAGCGACAGCACTAGTAGATATGTATGTAAAATGTGGTGAGATAGACAATAGTGT 1515
Query 1494 AGTGTTGTTTGATGGTATGTTAGAAAGAGATGTTGTCTCTTGGACAGGGATAATTGTTGG 1553
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 1516 AGTGTTGTTTGATGGTATGTTGGAAAGAGATGTTGTCTCTTGGACGGGGATAATTGTGGG 1575
Query 1554 ATTCGGACAAAACGGACGAGTCGAAGAAGCGTTTCGGTATTTCCACAAGATGATAAATAT 1613
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1576 ATTTGGACAAAACGGACGAGTCGAAGAAGCGTTTCAGTATTTCCACAAGATGATCAAT-T 1634
Query 1614 -TG-GAATTGAACCAAATAAGGTAACTTTTTTGGGGCTTCTTTCTGCTTGCCGACATTCT 1671
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 CTGAGA-TTGAACCAAATGAGGTAACTTTTTTGGGGCTTCTTTCTGCTTGCCGACATTCT 1693
Query 1672 GGACTACTTGAAGAAGCAAGATCAACCCTCGAAACGATGAAATCTGAATATGGTCTTGAA 1731
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1694 GGACTGCTTGAAGAAGCAAGATCAATCCTCGAAACGATGAAATGTGAATATGGTCTTGAA 1753
Query 1732 CCGTATCTAGAGCATTATTATTGTGTAGTTGATCTTCTTGGTCAAGCCGGGCTGTTCCAA 1791
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1754 CCGTATCTAGAGCATTATTATTGCGTAGTTGATCTTCTTGGTCAAGCTGGGCGGTTCCAA 1813
Query 1792 GAGGCT-AACGAATTGATAAATAAAATGCCGTTGGAGCCCGACAAAACAATATGGACGTC 1850
||||| || ||||||||||| |||||||| || || ||||| ||||||||||||| |||
Sbjct 1814 GAGGCAGAA-GAATTGATAAAGAAAATGCCTTTAGAACCCGATAAAACAATATGGATGTC 1872
Query 1851 TCTGCTCACTGCTTGCGGAACTCACAAGAATGCCGGACTGGTTACTGTAATTGCTGAGAA 1910
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1873 TCTGCTCACTGCTTGCGGAACTCACAAGAATGCGGGACTGATTACTGTAATTGCTGAGAA 1932
Query 1911 ATTACTCAAGGGGTTTCCGGATGATCCATCGGTT-TATACATCTCTTTCGAATGCTTATG 1969
||| ||||||| |||||||| ||||||||| || |||||||||||||| ||||||||||
Sbjct 1933 ATTGCTCAAGGCATTTCCGGAAGATCCATCG-TTGTATACATCTCTTTCCAATGCTTATG 1991
Query 1970 CTACGTTAGGCATGTGGGATCAGTTAAGTAAAGTGAGAGAAGCTGCTAAGAAGCTAGGGG 2029
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 1992 CTACGTTGGGCATGTGGGATCAGTTAAGTGAAGTGAGAGAAGCCGCTAAGAAGTTAGGGG 2051
Query 2030 CAAAAGAATCTGGAATGAGTTGGAT 2054
| ||||||||||||||||| |||||
Sbjct 2052 CCAAAGAATCTGGAATGAGCTGGAT 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77513648575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5