BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08230.1

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489736 jgi|Araly1|489736|fgenesh2_kg.6__2870__AT4G08230.1         588    2e-167


> Ahg489736 jgi|Araly1|489736|fgenesh2_kg.6__2870__AT4G08230.1
Length=484

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 409/451 (91%), Gaps = 14/451 (3%)
 Strand=Plus/Plus

Query  40   AAGAAGAAGAACCCAGAATTCTACTTTAATGGCGTACGTCGAAGGAGGTGTGGTTAAAGC  99
            |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||
Sbjct  1    AAGAAGAAGAACCCAGAATTTTACGTCAATGGCATACGTCGAAGGAGGTGTGGTTAAAGC  60

Query  100  GAAGAGGCCAATATGGAGACTAAGGACGATCAAAGATTTCTTCTTGTCCATCATTAATCT  159
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGCGGCCAATATGGAGACTAAGGACGATCAAAGATTTCTTCTTGTCCATCATTAATCT  120

Query  160  AATACAAGTCTTCTTTGTAACCATGTTTTCGATGGAGAAATCAGATGCATACAGGAAAGG  219
             ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  121  GATACAAGTCTTCTTTGTGACCATGTTCTCGATGGAGAAATCAGATGCATACAGGAAAGG  180

Query  220  CTCTAAGCCTAATAAGAAgtggggtggtggcatgggtggcggtggtggtggaggcggagg  279
            ||||||| |||| ||||||||||||||   | |||| || | ||| || || ||||| ||
Sbjct  181  CTCTAAGGCTAACAAGAAGTGGGGTGG---CTTGGG-GG-G-TGGGGGCGGTGGCGGTGG  234

Query  280  cagtggcggtggtggtggtggtaggggtggtggACCTCCTCGTGGGGGCCTCGACAATGT  339
              |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  235  TGGTGGTGGTGGTGGTGGTGGTAGCGGTGGTGGACCTCCTCGTGGGGGCCTCGACAATGT  294

Query  340  TCGTGGTTTGAATGATATCCGTGGAGCTGACCACAATTCCCTACCTGCATGTGGCTCGTG  399
             ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  295  GCGTGGCTTGAATGATATCCGTGGAGCTGACCACAATTCCCTACCGGCATGTGGCTCGTG  354

Query  400  CTGTGGCTAATCCTTGTTTGTGTGGACAGTGGAGCGCCCAAGAATAAACGAAGGGATATA  459
            |||||||||| ||||| ||  |||     ||||||| |||||||||||||||||||||||
Sbjct  355  CTGTGGCTAAGCCTTGATTC-GTG-----TGGAGCGTCCAAGAATAAACGAAGGGATATA  408

Query  460  TCATATATTTACATATTACTTAGTGTTGAAA  490
            | ||||||  |||||||| ||||||||||||
Sbjct  409  TTATATAT--ACATATTATTTAGTGTTGAAA  437


 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 46/48 (96%), Gaps = 1/48 (2%)
 Strand=Plus/Plus

Query  531  TCTGGTGTATTTTGTAATTGGGTCTAATCAAAGCTTTTTGTATTTAGA  578
            ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  438  TCTGGTGTA-TTTGTATTTGGGTCTAATCAAAGCTTTTTGTATTTAGA  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24627404382


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5