BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08240.2
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489738 jgi|Araly1|489738|fgenesh2_kg.6__2872__AT4G08240.2 776 0.0
> Ahg489738 jgi|Araly1|489738|fgenesh2_kg.6__2872__AT4G08240.2
Length=610
Score = 776 bits (420), Expect = 0.0
Identities = 509/549 (93%), Gaps = 18/549 (3%)
Strand=Plus/Plus
Query 28 GAGATTGAGAGAGCAATGAGAGGTGTCGGAGGTCCGTTGCTGTCAATCGGAGATCTTCTC 87
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATTGAGAGAGCGATGAGAGGAGTCGGAGGTCCGTTGCTGTCAATCGGAGATCTTCTC 60
Query 88 GCCGATCTCGGTGATGAAACTGGCCACTCCCCGCAAAATC-ATCCAAATCCTGA-AGTTT 145
|||||||||||||| ||||||||| |||| ||| |||| | ||||||||||||| | ||
Sbjct 61 GCCGATCTCGGTGAAGAAACTGGCGACTCACCGGAAAA-CAATCCAAATCCTGACA-ATT 118
Query 146 CATCAAAATCATACTCTGATGATACCATCTCTGGACCCTTGGATCTAACCCGACTCTTTC 205
| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CTTCAATATCAGACTCTGATGATACCATCTCTGGACCGTTGGATCTAACCCGACTCTTTC 178
Query 206 AGGAGAACTATGATAAACTTAACGATGCGTTTGCTGGTTCTGATCACTCATGGACCTCCC 265
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGGAAAACTATGATAAACTTAACGATGCGTTTGCTGGTTCTGATCACTCATGGACCTCCC 238
Query 266 TAACATTAGAGCTCTGCACTTCCCTAGAGACTGCTAACAAGTTGGTCCATGCCACAACCA 325
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 TAACATTGGAGCTCTGCACTTCCCTAGAAACTGCTAACAAGTTGGTCCATGCCACAACCA 298
Query 326 CAAATGCTAGATTGTTGTCAGAGAAGGTTGAAGAACTCGAGAAAATAGTGAAACGAGGAG 385
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CAAATGCTAGATTGTTGTCAGAGAAGGTGGAAGAACTCGAGAAAATAGTGAAACGAGGAG 358
Query 386 ACTCAGCAGTCGCAGCTGCCAGAACGGTTCACGCCACGGTTAACCAGAAAGGATTACCCT 445
|||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 359 ACTCTGCAGTGGCAGCTGCCAGATCGGTTCATGCCACGGTTAACCAGAAAGGATTACCCT 418
Query 446 CTACGTGATCAGTTAGGACATATAACAAACATCATATAATGCTTTACCAAGTGGTCCTGC 505
|| | ||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct 419 CTGCCTGAACAGTTAGGACATATAA-A----T--------GCTTTACCAAGTGGTCCTGC 465
Query 506 TGCTTCTTACAAGGACCACAGGTTGTTCGACCTCCCTGAAAGGGGACCATATACTTTTAG 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 466 TGCTTCTTACAAGGACCACAGGTTGTTCGACCTCCCTGAAAGGGGACCATATACTTT-AG 524
Query 566 ATTTGACTT 574
|||||||||
Sbjct 525 ATTTGACTT 533
Score = 121 bits (65), Expect = 9e-27
Identities = 79/86 (92%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 609 ATTTGACTTCAAAGATTTACTTATAAATATGGAACTCGTACTCTCTTGGGTCCTACTACA 668
||||||||| ||| ||||||||| |||||| |||||| ||| || |||||||||||||||
Sbjct 525 ATTTGACTTTAAATATTTACTTAAAAATATAGAACTCTTACCCTTTTGGGTCCTACTACA 584
Query 669 CTATCTATATAATTCTGCATTGCCCG 694
||||||||||||||||||||||||||
Sbjct 585 CTATCTATATAATTCTGCATTGCCCG 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25504231473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5