BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08250.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942611 jgi|Araly1|942611|scaffold_603155.1 2111 0.0
> Ahg942611 jgi|Araly1|942611|scaffold_603155.1
Length=1498
Score = 2111 bits (1143), Expect = 0.0
Identities = 1351/1454 (93%), Gaps = 4/1454 (0%)
Strand=Plus/Plus
Query 1 ATGAATTATCCTTACGAGGACTTCTTGGACCTCTTCTTCTCTACCCACACTGACCCGCTT 60
||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 27 ATGGATTATCCTTACGAGGACTTCTTGGACCTCTTCTTCTCTACCAACACCGACACGCTT 86
Query 61 GCCACGGCTGCAAGCACCTCTTCGAATGGTTATAGCTTGAATGATCTTGACATTGATTGG 120
|||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 87 GCCACGGCTGCAAGTACCTCCTCTTGTGGTTATAGATTGAATGATCTTGACATTGATTGG 146
Query 121 GACTGTGACTTCCGTGATGTCATTGAATCCATTATGGGTGATGAAGGAGCCATGATGGAA 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 147 GACTGTGACTTCCGCGATGTCATTGAATCCATTATGGGTGATGAAGGGGCCATGATGGAA 206
Query 181 CCGGAATCGGAAGCTGTTCCAATGCTTCATGACCAGGAGGGACTTTGTAACTCTGCGTCA 240
|| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 207 CCTGAATCGGAATCTGTTCCAATGCTTCATGGCCAGGAGGGACTTTGTAACTCTGCGTCC 266
Query 241 ACGGGTTTGTCTGTGGCTGATGGGGTTAGTTTTG-GTGAGCCTAAGACTGATGAATCAAA 299
||| |||| || ||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 267 ACGAGTTTATCCCTGGCTGATGGGGTTAGTGTAGAG-GAGCCTAAGACTGATGAATCAAA 325
Query 300 GGGCTTGAGGTTGGTTCACTTACTTGTGGCTGCTGCTGATGCGTCAACTGGTGCGAACAA 359
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 326 GGGCTTGAGGTTGGTTCACTTACTGGTGGCTGCTGCAGAGGCGTCAACTGGTGCAAACAA 385
Query 360 GTCTAGAGAGCTAACTCGGGTTATACTTGCAAGGCTTAAAGATTTGGTTTCTCCTGGTGA 419
||| | ||| ||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 386 GTCGCGGGAGTTAACTCGAGTTATACTTGCAAGGCTTAAGGACTTGGTTTCTCCTGGTGA 445
Query 420 CCGAACTAACATGGAGAGGTTAGCTGCTCACTTCACCAACGGACTTTCAAAGTTGCTCGA 479
|||||||||||||||||| |||||||| ||||||||||| || |||||||| ||| ||||
Sbjct 446 CCGAACTAACATGGAGAGATTAGCTGCCCACTTCACCAATGGGCTTTCAAAATTGTTCGA 505
Query 480 ACGAGATAGTGTTCTGTGTCCCCAACAACATCGTGATGATGTCTATGATCAGGCGGATGT 539
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 506 ACGAGATATTGTTCTGCGTCCCCAACAACATCGTGATGATGTTTATGATCAGGCGGATGT 565
Query 540 GATCTCAGCGTTCGAACTGCTGCAAAACATGTCTCCATATGTCAACTTTGGTTACCTCAC 599
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 566 GATCTCGGCGTTCGAACTGCTACAGAACATGTCTCCGTATGTCAACTTTGGTTACCTTAC 625
Query 600 TGCCACACAGGCTATTCTTGAAGCTGTGAAGTATGAACGTCGAATCCATATAGTGGATTA 659
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 626 GGCCACACAAGCTATTCTAGAAGCTGTGAAGTATGAGCGTCGAATCCATATAGTGGACTA 685
Query 660 CGATATCAA-TGAAGGCGTTCAGTGGGCTTCATTGATGCAAGCCTTGGTGTCTAGAAATA 718
|||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 686 CGATAT-AACTGAAGGCGTTCAGTGGGCTTCATTGATGCAGGCCTTGGTGTCTAAAAATA 744
Query 719 CAGGCCCGTCAGCCCAACATCTTAGAATCACGGCTTTGTCACGAGCAACAAACGGTAAAA 778
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 745 CAGGCCCATCAGCCCAACATCTTAGGATCACGGCTTTGTCACGAGCCACCAACGGTAAAA 804
Query 779 AATCCGTGGCTGCAGTCCAAGAGACTGGGCGGCGTCTAACTGCGTTTGCCGATTCTATCG 838
||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 805 AATCCATTGCTGCAGTTCAAGAGACTGGGCGGCGTCTAACTGCGTTTGCCGAGTCTATCG 864
Query 839 GCCAGCCATTTTCATATCAACACTGTAAACTTGACACCAATGCATTCAGCACATCATCTT 898
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 865 GCCAGCCATTTTCATATCACCACTGTAAACTCGACACCAATGCATTCAGCACATCATCCT 924
Query 899 TGAAACTTGTAAGAGGAGAAGCAGTGGTAATCAATTGTATGTTGCATCTTCCTCGGTTTA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 925 TGAAACTTGTAAGAGGAGAAGCAGTGGTAATCAATTGTATGTTGCATCTTCCACGGTTTA 984
Query 959 GTCACCAAACACCCAGTTCAGTCATTTCCTTTTTGTCGGAAGCTAAAACTCTAAACCCGA 1018
| |||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 985 GAAACCAAACACCCAATTCTGTCATTTCCTTTTTATCAGAAGCTAAAACTCTAAACCCGA 1044
Query 1019 AACTTGTTACGCTTGTTCACGAAGAAGTTGGTCTGATGGGAAACCAAGGTTTTCTATATC 1078
||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct 1045 AACTTGTCACGCTTGTTCACGAGGAAGTTGGTCTAATGGGGAACCAAGGTTTCCTATATC 1104
Query 1079 GTTTTATGGACTTGCTACATCAGTTCTCAGCCATATTCGACTCTCTAGAGGCAGGCCTTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1105 GTTTTATGGACTTGCTACATCAGTTCTCAGCCATATTCGACTCTCTAGAAGCAGGCCTTT 1164
Query 1139 CAATCGCTAACCCGGCCCGTGGCTTTGTTGAGCGTGTTTTTATCGGTCCTTGGGTTGCTA 1198
|||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1165 CAATCGCTAACCCGGCCCGTGGCTATGTTGAGCGTGTTTTTATCGGCCCGTGGGTTGCTA 1224
Query 1199 ATTGGTTGACGCGTATCACCGCTAATGATGCAGAAGTCGAGAGCTTTGCTTCGTGGCCAC 1258
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1225 ATTGGTTGACGCGTATCACCGCTGATGATGCAGAAGTCGAGAGCTTAGCTTCGTGGCCAC 1284
Query 1259 AGTGGTTAGAGACTAATGGGTTCAAACCCTTGGAAGTGAGCTTTACCAACCGTTGTCAAG 1318
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1285 AGTGGTTAGAGACTAATGGGTTCAAACCAATGGAAGTGAGCTTTGCCAACCGTTGTCAAG 1344
Query 1319 CAAAACTCCTTTTGAGTTTGTTTAATGATGGATTTAGAGTGGAAGAATTGGGCCAAAACG 1378
|||| ||||||||||| |||||||||||||| | || |||||||||||||||||||||||
Sbjct 1345 CAAAGCTCCTTTTGAGCTTGTTTAATGATGGGTATATAGTGGAAGAATTGGGCCAAAACG 1404
Query 1379 GGCTCGTTTTGGGATGGAAATCTCGGCGTCTTGTGTCGGCCTCCTTTTGGGCCTCGTGCC 1438
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1405 GGCTAGTTTTGGGATGGAAATCTCGGCGTCTTGTCTCGGCCTCGTTTTGGGCCTCCCACG 1464
Query 1439 AGACGAATCAGTAA 1452
|| |||||||||||
Sbjct 1465 AGTCGAATCAGTAA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5