BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08263.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924010 jgi|Araly1|924010|scaffold_105291.1                       84.2    5e-16


> Ahg924010 jgi|Araly1|924010|scaffold_105291.1
Length=1048

 Score = 84.2 bits (45),  Expect = 5e-16
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  47   CGCATCTCTGGCGAAGAAGCCGTTGGAAGTCGTCGCATCAACTTCGAAGAA  97
            ||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  179  CGCATCTCTAGCGAAGAAGCCGTTGGAAGTCGTCGCATCGACTTCGAAGAA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5