BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08280.1

Length=791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327082 jgi|Araly1|327082|fgenesh1_pm.C_scaffold_6002302           518    3e-146


> Ahg327082 jgi|Araly1|327082|fgenesh1_pm.C_scaffold_6002302
Length=378

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 348/381 (91%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  20   ATGGCAGCAGCGATATCAGCGACTTTGGTATTCGCTGCAAGACGACGTCCATTGTTCTGT  79
            ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct  1    ATGGCGGCAGCGATATCAGCGACTTTGGTGTTCGCTGCAAGACGACGTCCTTTGGTCTGT  60

Query  80   AGCTTATCATCATCGTCTTCTTCGAAACCAAACACGAGAAAGCTTGTTCTATACTCCAAA  139
            || || | ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  61   AG-TT-T-ATCATCGTCTTCTTCCAAACCAAACACGAGAAAGCTTGTTCTTTACTCCAAA  117

Query  140  CCTGGTTGTTGCCTCTGCGATGGTCTTAAAGAGAAGCTTCACGCTGCCTTCACTCTCTCC  199
            || |||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct  118  CCAGGTTGTTGTCTCTGCGATGGTCTTAAAGAGAAGCTTAACGCTGCTTTCTCTCTCTCC  177

Query  200  ACCGGTCCTGATTCACTCAACGACGTTACTCTTCAGGTAAGAGATATAACTACGAATCCC  259
             | ||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||||||
Sbjct  178  TCTGGTTCTGATTCACTCAACGACGTTACTCTTCAGGTGAGGGATATCACTACAAATCCC  237

Query  260  GAGTGGGAACGAGCGTATCAGTATGAGATACCAGTGTTGGCTAAAGAGAATTCTGATGGG  319
            ||||||||| |||||||||||||||||||||| || ||| ||||||| ||||||||||| 
Sbjct  238  GAGTGGGAAAGAGCGTATCAGTATGAGATACCGGTCTTGACTAAAGAAAATTCTGATGGC  297

Query  320  AAAGAGGAAGTTTTACCGAGGTTATCTCCACGTTTAAGTGCAGAACTCATTCAGAAGAAG  379
            |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||| 
Sbjct  298  AAAGAGGAAGTTTTGCCGAGGTTATCTCCACGTTTAAGTGCGGAAATCATACAGAAGAAA  357

Query  380  CTACTTGCTGCCTTTAGTTGA  400
            ||||||||||||||||| |||
Sbjct  358  CTACTTGCTGCCTTTAGATGA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29202154422


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5