BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08290.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489740 jgi|Araly1|489740|fgenesh2_kg.6__2874__AT4G08290.1 2309 0.0
> Ahg489740 jgi|Araly1|489740|fgenesh2_kg.6__2874__AT4G08290.1
Length=1490
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1502 (95%), Gaps = 17/1502 (1%)
Strand=Plus/Plus
Query 1 ATAGTTTTTGTTTTTCCTTTTGCTACTCTACATGACTCTCGATCGAGGGAAAAAACTAGT 60
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATAGTTTTTGTTTTTTCTTTTG-----CTACATGACTCTCGATCGAGGGAAAAAACTAGT 55
Query 61 TCTCATGTTTATCCAAAACTCTATATCACCTTTTTGATGTTTTTATATAAGAAGACTTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 56 TCTCATGTTTATCCAAAACTCTATATCACCTTTTTGATGTTTTTATATAAGAAGACTCGT 115
Query 121 TCATCCATACTCTTTCAATAA-C--CTTGACAGaaaaaaaaaaTAAACACAAAATTTCAA 177
|||| |||||||||||||||| | || ||||| ||||||| || ||| ||||||||||
Sbjct 116 TCAT-CATACTCTTTCAATAACCAGCTAGACAG--AAAAAAATTACACAAAAAATTTCAA 172
Query 178 TAACCATGGAGGGTGTTAGTGCAACTATGCATAAGTTAAGGCCTTATTTGTTAATGATCT 237
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 173 TAACCATGGAGGGTGTTAGTGCAACTATGCATAAGTTTAGGCCTTATTTGTTAATGATAT 232
Query 238 TTTTGCAATTTGGAGCAGCAGGAACATATATTGTTATTATGGCCACTCTTAACCAAGGCC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TTTTGCAATTTGGAGCAGCAGGAACATATATTGTTATTATGGCCACTCTTAACCAAGGCC 292
Query 298 AGAACCGTTACGTCGTAATTGTGTATCGTAATCTTGTGGCTGCTCTTGTCCTTGCACCTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGAACCGTTACGTCGTAATTGTGTATCGTAATCTTGTGGCTGCTCTTGTCCTTGCACCTT 352
Query 358 TTGCACTCATCTTTGAAAGGAAAGTGAGGCCGAAGATGACACTATCGGTTTTGTGGAAAA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 353 TTGCACTCATCTTTGAAAGGAAAGTGAGGCCGAAGATGACACTATCGGTTTTCTGGAAAA 412
Query 418 TAATGGCACTTGGTTTCTTAGAGCCAGTCTTGGATCAGGGTTTTGGTTACTTGGGGATGA 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 413 TAATGGCACTTGGTTTCTTAGAGCCAGTCTTGGATCAGGGTTTTGCTTACTTGGGGATGA 472
Query 478 ACATGACATCAGCAACATATACATCTGCGATCATGAACATTCTTCCTTCTGTCACATTTA 537
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 ATATGACATCAGCAACATATACATCTGCGATCATGAACATTCTTCCTTCGGTCACATTTA 532
Query 538 TAATAGCTTGGATTTTAAGAATGGAGAAAGTTAACATAGCGGAGGTACGAAGCAAAGCAA 597
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 533 TAATAGCTTGGATTTTAAGAATGGAGAAAGTGAACATAGCAGAGATACGAAGCAAAGCAA 592
Query 598 AGATCATTGGGACATTGGTGGGTCTTGGAGGGGCACTAGTAATGACATTGTACAAAGGTC 657
|||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 593 AGATAATCGGGACATTGGTGGGTCTTGGAGGGGCATTGGTAATGACATTGTACAAAGGTC 652
Query 658 CGCTTATTCCTTTACCGTGGTCTAACCCGAATATGGATCAACAAAACGGACATACAAATA 717
|||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||
Sbjct 653 CGCTTATTCCTTTACCATGGTCTAACCAGACTATGGATCAACAAAACGGACATACCAATA 712
Query 718 ATTCACAAGACCATAACAATTGGGTTGTTGGAACCTTGTTGATTCTCCTCGGTTGTGTTG 777
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 713 GTTCAGAAGACCATAACAATTGGGTTGTTGGAACCTTGTTGATACTCCTCGGTTGTGTTG 772
Query 778 CTTGGTCTGGTTTTTATGTTTTACAGTCGATAACAATAAAGACGTACCCTGCCGATCTTT 837
|||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
Sbjct 773 CTTGGTCTGGTTTTTATGTTTTACAGTCCATAACAATAAAGACATATCCAGCCGATCTCT 832
Query 838 CATTATCAGCCTTAATATGCCTAGCCGGGGCTGTCCAAAGCTTCGCGGTAGCGCTTGTGG 897
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 833 CACTATCAGCCTTAATATGCCTAGCCGGGGCTGTCCAAAGCTTCGCTGTAGCACTTGTGG 892
Query 898 TGGAGAGACAC-CCTAGCGGATGGGCGGTTGGTTGGGATGCAAGGCTTTTTGCACCTCTT 956
||||| | ||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 893 TGGAGCGCCACTCC-AGCGGATGGGCGGTTGGATGGGATGCAAGGCTTTTTGCACCTCTT 951
Query 957 TATACAGGAATAGTTAGCTCGGGGATAACGTACTATGTTCAAGGGATGGTTATGAAGACG 1016
|| || || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 952 TACACGGGCATAGTAAGCTCGGGGATAACATACTACGTTCAAGGGATGGTTATGAAGACG 1011
Query 1017 AGAGGGCCAGTTTTTGTTACTGCCTTTAACCCTCTCTGCATGATTCTTGTAGCTCTCATT 1076
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1012 AGAGGACCAGTTTTTGTCACTGCCTTTAACCCACTCTGCATGATTCTTGTAGCTCTCCTT 1071
Query 1077 GCCTCTTTTATTCTTCATGAACAAATCCATTTCGGATGTGTAATAGGAGGGGCAGTGATC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1072 GCCTCTTTTATTCTTCATGAACAAATCCATTTCGGATGTGTAATAGGAGGGGCCGTGATC 1131
Query 1137 GCCGCGGGTTTGTATATGGTTGTTTGGGGAAAAGGAAAAGACTATGAAGTATCCGGATTA 1196
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1132 GCAGCGGGATTGTATATGGTAGTTTGGGGAAAAGGAAAAGACTATGAAGTATCAGGATTA 1191
Query 1197 GATATCCTTGAAAAGAATAGCCTCCAAGAATTGCCTATCACAACTAAAAGTGAGGATGAC 1256
||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1192 GATATCCTTGAAAAGAATAGCCTCCAAGAATTGCCAATCACAACTAAAGGTGACGATGAC 1251
Query 1257 AACAAATTGGTTTCTTCTATAAGCGACAACAGCAATGTGACCATTCCTGGTGGTGCGCAT 1316
|| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1252 AA-A--TTGGTTTCTTCTATAAGCGACAACAGCAATGTGACCATTCCCGGTGGTGTGCAT 1308
Query 1317 AGTAACACATCTGGAATATAAGTGAAGAAAGCATTTCTCGAGTTATAAATACATATTTGT 1376
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1309 CGTAACACATCTGGAATATAAGTGAAGAAAGTATTTCTCGAGTTATAAATACATATTTGT 1368
Query 1377 ATTCGACTAAAATAAATACATATGTATTTGTATGCATTTGGTATGAAATACAT-GAAATT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1369 ATTCGACTAAAATAAATACATATGTATTTGTATGCATTTGGTATGAAATACGTTGAAATT 1428
Query 1436 ATTTTTATGTTTTGATAGTTACATAAGTTGTAGTTGGTCAGGTCCAAATCACACAAAAAC 1495
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 1429 ATTTTTATGTTTTGACAGTTACATAAGTTATAGTTGGTCATGTCCAAATCACACTAAAAC 1488
Query 1496 AA 1497
||
Sbjct 1489 AA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5