BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08300.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489742 jgi|Araly1|489742|fgenesh2_kg.6__2876__AT4G08300.1 1821 0.0
Ahg473821 jgi|Araly1|473821|fgenesh2_kg.1__3775__AT1G44800.1 739 0.0
> Ahg489742 jgi|Araly1|489742|fgenesh2_kg.6__2876__AT4G08300.1
Length=1314
Score = 1821 bits (986), Expect = 0.0
Identities = 1173/1259 (93%), Gaps = 30/1259 (2%)
Strand=Plus/Plus
Query 113 CCTCTCAAATCGAGGAAGAAAATGAAAGGAGGAAAGATGGATAAATTGAAGCCAATAATA 172
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCTCTCAAACCAAGGAAGAAAATGAAAGGAGGAAAGATGGATAAATTGAAGCCAATAATA 140
Query 173 GCAATCATATCACTCCAATTTGGATATGCAGGCATGTACATCATTACTATGGTCTCCTTC 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GCAATCATATCACTCCAATTTGGATATGCAGGCATGTACATCATTACTATGGTCTCCTTC 200
Query 233 AAGCATGGCATGAACCATTGGATCCTTGCTACTTACCGACATGTCGTCGCCACAATTGTC 292
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 AAGCATGGCATGAACCATTGGATCCTTGCTACTTACCGTCATGTCGTCGCCACAATTGTC 260
Query 293 ATAGCTCCTTTTGCTCTCATTCTCGAGAGGAAAATAAGGCCTAAGATGACATGGCCATTG 352
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 261 ATAGCTCCTTTTGCTCTCATTCTCGAGAGGAAAGTAAGGCCTAAGATGACATGGCCATTG 320
Query 353 TTCCTTAGGATTCTTGCCCTTGGATTCCTAGAACCACTTTTGGACCAGAACTTGTACTAC 412
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCCTTAGGATTCTTGCCCTCGGATTCCTAGAACCACTTTTGGACCAGAACTTGTACTAC 380
Query 413 ATAGGAATGAAAGCCACGTCAGCAACGTATAGTTCTGCCTTTGTTAATGCACTTCCCGCC 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 ATAGGAATGAAAGCCACGTCAGCAACGTATAGTTCTGCCTTTGTTAATGCACTTCCCGCA 440
Query 473 ATTACCTTCATAATGGCTGTCATTTTCAGGATAGAAACTGTAAATTTGAAGAAGACACGA 532
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 441 ATTACTTTCATAATGGCCGTCATTTTCAGGATAGAAACTGTAAACTTGAAGAAGACACGA 500
Query 533 AGTCTTGCAAAAGTGATTGGAACAGCAATAACTGTGGGAGGAGCAATGGTTATGACGTTG 592
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 AGTCTTGCAAAAGTGATTGGAACAGCAATAACTGTGGGAGGAGCTATGGTTATGACGTTG 560
Query 593 TACAAAGGTCCAGCCATTGAGCTCTTTAAGACTGCTCATAGCTCTTTACACGGCGGCTCC 652
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 561 TATAAAGGTCCAGCCATTGAGCTCTTTAAGAGTGCTCATACCTCTTTACACGGCGGCTCC 620
Query 653 TCGGGCACCTCCTCCGAGACCACTGATCAGAATTGGGTTACCGGAACTCTAGCGGTTATG 712
|| || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 621 TCAGGTAGCTCCTCCGAGACCACTGATCAGAATTGGGTTACCGGAACTCTAGCTGTTATG 680
Query 713 GGTAGTATCACCA-CTTGGGCAGGTTTCTTCATTCTACAATCGTTCACGTTGAAAAAATA 771
||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 681 GGTAGTATCAC-AGCTTGGGCAGGTTTCTTTATTTTACAATCGTTCACGTTGAAAAAATT 739
Query 772 TCCGGCTGAGCTTTCGCTAGTGATGTGGATTTGTGCCATGGGAACGGTCTTAAACACCAT 831
|||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 740 TCCGGCGGAGCTGTCACTAGTGATGTGGATTTGCGCCATGGGAACGGTCTTAAACACCAT 799
Query 832 CGCTTCGCTCATAATGGTGCGCGACGTAAGCGCATGGAAAGTCGGTATGGACTCGGGCAC 891
||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||
Sbjct 800 CGCTTCGCTCATAATGGTGCGTGATGCGAGCGCATGGAAAGTCGGTATGGATTCGGGCAC 859
Query 892 ACTTGCGGCTGTTTACTCCGGAGTGGTTTGTTCGGGTATGGCGTATTACATACAAAGCAT 951
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 860 ACTTGCAGCTGTTTACTCCGGAGTTGTTTGTTCGGGTATGGCGTATTACATACAAAGCAT 919
Query 952 TGTGATTAGGGAACGAGGTCCGGTTTTTACGACATCGTTTAGTCCTATGTGCATGATCAT 1011
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 920 TGTTATTAGGGAACGAGGCCCGGTTTTTACGACATCATTTAGTCCTATGTGCATGATCAT 979
Query 1012 CACTGCTTTCCTCGGCGTGTTAGTTTTGGCTGAAAAGATTCACCTTGGAAGTATAATCGG 1071
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CACTGCTTTCCTGGGCGTGTTAGTTTTGGCTGAAAAGATTCACCTTGGAAGTATAATCGG 1039
Query 1072 GGCGATTTTTATCGTCTTCGGGCTATATAGCGTTGTGTGGGGGAAAGCTAAGGACGAAGT 1131
||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1040 GGCGATTTTCATCGTCTTTGGGCTATATAGCGTGGTGTGGGGAAAAGCTAAGGACGAAGT 1099
Query 1132 GATATCGGTGGAAGAGAAAATAGGAATGCAGGAGCTGCCGATCACCAACA-CAT--CGAC 1188
||| || | ||||||||||||||| |||| |||||||| || ||||||| ||| ||||
Sbjct 1100 GATTTCCGCCGAAGAGAAAATAGGATTGCAAGAGCTGCCAATAACCAACAACATGTCGAC 1159
Query 1189 AAAAGTGGAGGGTGGTGGTATTACCAGTGAAGTAAACGAAGGTGTGACTAACAATACCCA 1248
|||| |||||||||||||||| |||||| |||| || | || || || |
Sbjct 1160 AAAAACGGAGGGTGGTGGTATTCCCAGTGCAGTA---GA--------C-AA-AA--CCTA 1204
Query 1249 AGTGTAACCCCAATAAAGCAATTAAGAG-AAATTTTTGAAGACCAAATTTCCAAGAAAGG 1307
||||||||| | ||||||| || |||||||||||||||||||||||||||| ||
Sbjct 1205 AGTGTAACC----T----CAATTAA-AGGAAATTTTTGAAGACCAAATTTCCAAGAAGGG 1255
Query 1308 AAATTTGTTTGTCTTTCTTGTTTGTTTTATGCTGTTTACATTTTCAAGTTATCTGTGTT 1366
|||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1256 AAATTTGTTTATCTTTCTTGTTTGTTTTATGTTGTTTACATTTTCAAGTTGTCTGTGTT 1314
Score = 115 bits (62), Expect = 9e-25
Identities = 78/85 (92%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 1 GTATGCTCAAACAAGTAACTCTTAGTCGTTCACGAAACATCTCatatatatctagagaga 60
|||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 1 GTATGCTCAAACAAGTAACTCTTAGTCGTTCACGAAACATATC--GTAT-T-TAGAGAGA 56
Query 61 gaaacaaaacaatatatagagaatc 85
|||||||||||||||||| ||||||
Sbjct 57 GAAACAAAACAATATATATAGAATC 81
> Ahg473821 jgi|Araly1|473821|fgenesh2_kg.1__3775__AT1G44800.1
Length=1546
Score = 739 bits (400), Expect = 0.0
Identities = 835/1041 (80%), Gaps = 46/1041 (4%)
Strand=Plus/Plus
Query 131 AAA-ATGAAAGGAGGAAAG-ATGGATAAATTGAAGCCAATAATAGCAATCATATCACTCC 188
||| |||||||| || ||| ||||| ||||||||||| ||| | || || || ||||| |
Sbjct 117 AAAGATGAAAGGTGG-AAGCATGGAGAAATTGAAGCCGATATTGGCGATAATTTCACTGC 175
Query 189 AATTTGGATATGCAGGCATGTACATCATTACTATGGTCTCCTTCAAGCATGGCATGAACC 248
||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| |||
Sbjct 176 AATTTGGGTATGCAGGCATGTATATCATCACTATGGTCTCGTTCAAGCATGGCATGGACC 235
Query 249 ATTGGATCCTTGCTACTTACCGACATGTCGTCGCCACAATTGTCATAGCTCCTTTTGCTC 308
||||| | ||||| || ||||| |||||||||||||| |||| || ||||| |||||||
Sbjct 236 ATTGGGTTCTTGCCACATACCGTCATGTCGTCGCCACGGTTGTTATGGCTCCCTTTGCTC 295
Query 309 TCATTCTCGAGAGGAAAATAAGGCCTAAGATGACA-TGGCCATTGTTCCT-TAGGATTCT 366
||||| ||||||||||||| ||||| ||||| ||| | ||| | || || || ||||
Sbjct 296 TCATTTTCGAGAGGAAAATTAGGCCCAAGATCACACT-ACCAATATT-CTGGCGGCTTCT 353
Query 367 TGCCCTTGGATTCCTAGAACCACTTTTGGACCAGAACTTGTACTACATAGGAATGAAAGC 426
||| |||||| | |||| || |||||||||||||| ||||||||||||||| |||||
Sbjct 354 TGCTCTTGGAATATTAGAGCCCCTTTTGGACCAGAATTTGTACTACATAGGATTGAAAAA 413
Query 427 CACGTCAGCAACGTATAGTTCTGCCTTTGTTAATGCACTTCCCGCCATTACCTTCATAAT 486
|||||||||| |||| | |||||||||| ||||||||||||||| | |||||||| |
Sbjct 414 CACGTCAGCATCGTACACTTCTGCCTTTACCAATGCACTTCCCGCCGTCACCTTCATTCT 473
Query 487 GGCTGTCATTTTCAGGATAGAAACTGT-AAATTT-GAAGAAG-ACACGAAGTCTTGCAAA 543
|| ||||||||||| | || || || || ||| ||| | | ||| ||| |||||||
Sbjct 474 CGCCCTCATTTTCAGGCTTGAGACCGTCAACTTTAGAA-AGGTCCAC--AGTGTTGCAAA 530
Query 544 AGTGATTGGAACAGCAATAACTGTGGGAGGAGCAATGGTTATGACGTTGTACAAAGGTCC 603
|||| | ||||| | |||||| || |||||||||||| | ||||| ||||||||||||||
Sbjct 531 AGTGGTAGGAACGGTAATAACAGTAGGAGGAGCAATGATAATGACTTTGTACAAAGGTCC 590
Query 604 AGCCATTGAGCTC-TTTAAGACTGCTCATAGCTCTTTACACGGCGGCTCCTCG-GGCAC- 660
||||| ||| || | ||| | ||||||| ||||| |||||||| | | | ||||
Sbjct 591 GGCCATCGAGATCGTGAAAG-CCGCTCATAATTCTTTCCACGGCGG-TTCAAGCAGCACG 648
Query 661 CTCCTCCGAGACCACTGATCAGAATTGGGTTAC-CGGAACTC-TAGCGGTTATGGGTAGT 718
| || ||| | ||| | | | |||| | | |||||| | |||| ||||||| |||
Sbjct 649 C-CCACCG-G-CCA---A-C---ACTGGG-TCCTCGGAAC-CATAGCCATTATGGGCAGT 696
Query 719 ATCACCACTTGGGCAGGTTTCTTCATTCTACAATCGTTCACGTTGAAAA-AATATCCGGC 777
||| | || ||||| | |||||||||| ||||||| | ||| || |||| ||||| ||
Sbjct 697 ATCTCTACATGGGCTGCTTTCTTCATTTTACAATCATACACATT-AAAAGTTTATCCAGC 755
Query 778 TGAGCTTTCGCTAGTGATGTGGATTTGTGCCAT-GGGAACGGTCTTAAACACCATCGCTT 836
|||||| || || || | || ||| |||| || ||| ||| || ||||| |||| ||||
Sbjct 756 TGAGCTATCACTTGTAACGTTGATATGTGGGATAGGG-ACGATCCTAAACGCCATTGCTT 814
Query 837 CGCTCATAATGGTGCGCGACGTAAGCGCATGGAAAGTCGGTATGGACTCGGGCACACTTG 896
|||| |||||||| || ||| || ||||||||| |||||||||| || || ||||| |
Sbjct 815 CGCTAATAATGGTTCGTGACCCGAGTGCATGGAAAATCGGTATGGATTCCGGAACACTCG 874
Query 897 CGGCTGTTTACTCCGGAGTGGTTTGTTCGGGTATGGCGTATTACATACAAAGCATTGTGA 956
| || |||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 875 CCGCGGTTTACTCTGGAGTGGTTTGTTCGGGGATAGCGTATTACATACAAAGCATTGTGA 934
Query 957 TTAGGGAACGAGGTCCGGTTTTTACGACATCGTTTAGTCCTATGTGCATGATCATCACTG 1016
||| | |||| || || || |||||||| ||||||||||||||||| |||||||||||||
Sbjct 935 TTAAGCAACGTGGCCCTGTCTTTACGACGTCGTTTAGTCCTATGTGTATGATCATCACTG 994
Query 1017 CTTTCCTCGGCGTGTTAGTTTTGGCTGA-AAAGATTCACCTTGGAAGTATAATCGGGGCG 1075
| |||||||||| || ||||||||||| ||| || ||||||||||||||||| |||||
Sbjct 995 CCTTCCTCGGCGCATTGGTTTTGGCTGAGAAA-ATCCACCTTGGAAGTATAATTGGGGC- 1052
Query 1076 ATTTTT-ATCGT-CTTCGGGCTATATAGCGTTGTGTGGGGGAAA-GCTAAGGACGAAGTG 1132
| |||| || || ||| || ||||| || || || ||||| ||| | |||||||||||||
Sbjct 1053 AGTTTTCATAGTTCTT-GGACTATACAGTGTGGTATGGGGAAAAAG-TAAGGACGAAGTG 1110
Query 1133 ATATCGGT-GGAAGAGAAAAT 1152
| ||| | ||| ||||||||
Sbjct 1111 A-ATCCTTTGGATGAGAAAAT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5