BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08310.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489743 jgi|Araly1|489743|fgenesh2_kg.6__2877__AT4G08310.1 2296 0.0
> Ahg489743 jgi|Araly1|489743|fgenesh2_kg.6__2877__AT4G08310.1
Length=1665
Score = 2296 bits (1243), Expect = 0.0
Identities = 1552/1692 (92%), Gaps = 58/1692 (3%)
Strand=Plus/Plus
Query 1 TTCTGAGAGAAATGTCTGACGGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTGAGAGAAATGTCT---GGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 57
Query 61 ACAAGATTGATTTGAAGGACGGTGAAGCAACAACACCACCAAAAACAGATATCGAGTCAC 120
|||||||||||| |||||||||| || ||||| | | ||||| ||||||||| |
Sbjct 58 ACAAGATTGATTCCAAGGACGGTG-AG--GCAACA--A-C---AACAGCTATCGAGTCTC 108
Query 121 AGATTCTCGCGGCTATGCAGTCCCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 109 AGATTCTCGCGGCTATGCAGTCTCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 168
Query 181 CCTTTGAAGGTGTGCGGAGGTTGCTGGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 240
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 169 CCTTTGAGGGTGTTCGGAGGTTGCTAGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 228
Query 241 ATGTGCATAAGAGCTTTGTTAAGCAACATTTGGTTCAGTGCTTAGCAGGTGCTGAGAATG 300
||| ||| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||
Sbjct 229 ATGCGCACAAGAGCTTTGTTAAACAACATTTGCATAAGTGCTTAGAAGGTGCTGAGAATG 288
Query 301 ATGAAACTTCAGAAAATTCTCTAGAAACTGAGAAGAAAGATGATGTAACTCCAGTGAAAG 360
|||||||||| |||||||||| |||||||||||||||||||| ||| ||||| |||||||
Sbjct 289 ATGAAACTTCGGAAAATTCTCAAGAAACTGAGAAGAAAGATGCTGTTACTCCTGTGAAAG 348
Query 361 AAGCAGCAGAGTTATCTAAAGAGCAC-ACGACGAAAAAAGATGGTAAGGAAGATATGACT 419
||| |||| ||||||||||||||||| | || ||||||||||| ||||||||||| ||||
Sbjct 349 AAGTAGCAAAGTTATCTAAAGAGCACAAGGA-GAAAAAAGATGTTAAGGAAGATACGACT 407
Query 420 GGTGATGATGAGAAAACAAAAGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACG 479
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGTGATGATGAGAAAACGGAGGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACA 467
Query 480 TCCAAATCTGTTGCTGAGCAAACAAAGGATGAGG--A-CAAAGAGGTCCTGCAGAGTGAT 536
||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 468 TCCCAATCTGTAGCTGAGCAAACAAAGGATGAGGACAGCAAAGAGGTCCTGCAGAGTGAT 527
Query 537 ATAAAGAAAGCCCTTCGTAAAAGGTCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 596
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 ATAAAAAAAGCCCTTCGTAAAAGGGCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 587
Query 597 ATGGGTTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTATTCTCTTGAC 656
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 588 ATGGGCTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTACTCTCTTGAC 647
Query 657 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCATGAAGCTACA 716
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 648 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCCTGAAGCTACA 707
Query 717 CAATCTTCAACTAAGGCTCAGAGGAAACCAGTATCTAAGAAGGTCAAGAGCACACCAGCT 776
|||| ||||||||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct 708 AAATCGTCAACTAAGGCTCAGAGGAAAACTGTAACCAAGAAGGTCAAGAGCACACCAGCT 767
Query 777 AAAAACTCAGACAGTGAAGAAATGTTTGATTCAGATGGTGAAGACGAGGAGGAGGACAAG 836
||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 768 AAAAATTCAGACAGTGAAGAAATGTCTGATTCAGATGGT---------GAGGACGACAAG 818
Query 837 GAAGT-AGCTGT--AAAA-AAGAAGATGGCGGAGAAAAGAAAATTATCAAAGTCAGAGGG 892
||||| | |||| |||| ||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 819 GAAGTCA-CTGTAAAAAAGAAGAAGACGGCTGAGAAAAGAAAATCGTCAAAGTCAGAGGG 877
Query 893 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACCTGCCTCTGCAAAGAAGACAAAACAAAC 952
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 878 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACTTGCATTTGCAAAGAAGACAAAACAAAC 937
Query 953 AGATTCACAGAGCGACAGTGACGCAGGAGAAAAGGCACCATCTTCAGAAAAATCTGTAAA 1012
||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||
Sbjct 938 AGATTCACAGAGCGACAGTGATGCAGGAGAAAAGGCATCATCTTCCGAAAAATCTGTGAA 997
Query 1013 GAAACCGGAAACTCCAACGACTGGCTATGGGAAGCGTGTTGAGCACCTTAAATCGATCAT 1072
||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 998 GAAACAGGAAACTCCAACGACTGGCTACGGGAAGCGTGTTGAGCATCTTAAATCGATCAT 1057
Query 1073 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1117
Query 1133 GGAGAAACGCGAGGAAATTCTGATTAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1192
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 GGAGAAACGCGAGGAAACTCTGATAAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1177
Query 1193 GTCTGCAAATCCTTCagagaaagagatcaaggaagtcaagaaaagaaaagaaagaacaaa 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1178 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCAAAAAAAGAAAAGAAAGAACAAA 1237
Query 1253 gGAGCTTGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCAAGGAGAAGATCCAGC-G 1311
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1238 GGAGCTCGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCGAGGAGAAGATCCA-CTG 1296
Query 1312 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGATTCag 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1297 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGAATCAG 1356
Query 1372 aagattctgagaatgaagaggatgaggatgaagaagtagtagtagaagaagaagagga-g 1430
|||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
Sbjct 1357 AAGATTCTGAGAATGAGGAAGATGAGGATGAAGAAGTAGTAGTAGAAGAAGATGAAGACG 1416
Query 1431 --gaagaagacgagggaggt-agtgaagaTGGCGGAGAGGGAAGTCAAAACGAAGGAGAA 1487
||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 1417 AAGAAGAAGACGAGGTAGGTGA-TGAAGATGGCGGAGATGGAAGTCAAAACGAAGGAGAA 1475
Query 1488 CTAAAAACTGAGGATGGTGGTGAAGAAGAAA-GCGAATAATTGTAAGATCGTTGGTTGT- 1545
| ||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 1476 CCAAACACTGAGGATGGTGGTGAAGA-GAAAAGCGAGTAATTGTAAGATCGTTGGTTGTG 1534
Query 1546 -TT-G-T-------A--A----TGTAGCCTAGTTTCACTATGTACTGTTGTAGAGTGGTG 1589
|| | | | | |||||| ||| ||| |||||||||||||||||||||||
Sbjct 1535 CTTAGCTTTGTCGCAGGAACAATGTAGCTTAGCTTCTCTATGTACTGTTGTAGAGTGGTG 1594
Query 1590 ATATTTTGTACCTTTTTAATGTGCTAATCATATTTATGACATTAGGATATGAATTTTAAG 1649
||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1595 ATATTTTGTAC-TTTTTAAGGTGTTAATCATAATTATGACATTAGGATATGAATTTTAAG 1653
Query 1650 GCTTGCATTATA 1661
|||||||||||
Sbjct 1654 ACTTGCATTATA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5