BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08330.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489746 jgi|Araly1|489746|fgenesh2_kg.6__2880__AT4G08330.1 1164 0.0
> Ahg489746 jgi|Araly1|489746|fgenesh2_kg.6__2880__AT4G08330.1
Length=886
Score = 1164 bits (630), Expect = 0.0
Identities = 821/908 (90%), Gaps = 33/908 (4%)
Strand=Plus/Plus
Query 42 GAAGTAGTCAAAGTCACCCGCATCGATTGGGACACGTTCTTCTTCATCAACCTAATCGAA 101
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GAAGTACTCAAAGTCATCCGAATCGATTGGGACACGTTCTTCTTCATCAACCTAATCCAA 60
Query 102 TCTTTTATCCTCTCTTCGATCCCAACATCGATAAATTATTATTACCATTTGCGGC-GTT- 159
| || |||||||||||||||||| |||||| || |||||||||||||| ||| |||
Sbjct 61 AC--TTGTCCTCTCTTCGATCCCAA-ATCGAT-AA--ATTATTACCATTTGAGGCGGTTA 114
Query 160 GTTGAGTGATCTCCGCGACTATGGAGAGATCAGCGTCGGTGGGTGTTAACGACGGCCGTT 219
|| | ||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||
Sbjct 115 CTT-ATTGATCTCGGCGACGATGGAGAGATCGGCGTCGGTGGGTGTTAACGCCGACCGTT 173
Query 220 TTGGTGGCAACCAATTCTATTCGCCAtctttc-tcttcttcttcttcttcttcttcCATG 278
| ||||||||||||||||||| | || | || | ||| ||||| ||||||||||||
Sbjct 174 TCGGTGGCAACCAATTCTATT---C-TC---CGTC-T-TTC-TCTTCATCTTCTTCCATG 223
Query 279 AGACATGTTAATTACAGTTGTGGATCTTGTGGGTATGAACTAAACCTGAGCTCCACGAAT 338
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 224 AGACATGTCAATTACAGTTGTGGATCTTGTGGGTATGAACTAAACCTGAGCTCTACTAAT 283
Query 339 CGAATCACATCGA-CAATCGGATCAAAGTACGGTAAATCCATGAAGAGTGGGATCATATC 397
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 284 CGAATCACATC-ATCAATCGGATCGAAGTACGGTAAATCCATGAAGAGTGGGATCATTTC 342
Query 398 TTTCTTCAACATCGACGAGGGAAGATTCAGTCAGGTCGATGAGTTCCAATGCATGCCTCA 457
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTTCTTCAACATCGACGAGGGTAGATTCAGTCAGGTCGATGAGTTCCAATGCATGCCTCA 402
Query 458 CTTCTCTAGATACTCTTGGGGTTTGTTTC-GACACAGAACGAAGCTTCTATGTCGCAAAT 516
|||||||||||||||||||||||| || | |||||||||| |||||||| ||||| ||||
Sbjct 403 CTTCTCTAGATACTCTTGGGGTTTATT-CAGACACAGAACTAAGCTTCTCTGTCGTAAAT 461
Query 517 GTAATAATTATATCGGCAATGCTTCTCAGGAGAAGGCTCCTGAGTATGCACTTGTTACAC 576
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 462 GTAATAATTATATCGGCAATGCTTCTCAAGAGAAGGCTCCTGAGTACGCGCTTGTAACAC 521
Query 577 AAAACTCGGATCCGACATCGCCTAGGATTGGTAGTGTTACGAAGTACGATATCAGAATCC 636
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 522 AAAACTCCGATCCGACATCGCCTAGGATTGGTAGTGTTACGAAGTATGATATCAGGATCC 581
Query 637 GCTCGCTTCAACCTTCTTCTGCGGTCGCTTTGCTGTGAGTGCTTCTTCTACTACTGT--A 694
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 582 GTTCGCTTCAACCCTCTTCTGCGGTCGCTTTGCTGTGAGTGCCTCTTCTACTACTGTGTA 641
Query 695 TATACCCGCCGATATTCTAAATCTTCTTCGGAGTTTCGGATTT-AGATCTTCGATGAAGT 753
|||||||||||| | |||| ||||||||| ||||||| |||| ||||||||||||||||
Sbjct 642 TATACCCGCCGAGACTCTACATCTTCTTCAGAGTTTCT-ATTTTAGATCTTCGATGAAGT 700
Query 754 GTTTGTTATCGGCTTGGTACTGTTTTGATAAGGTTGGTTTGGCTTTTCAGTTGTATAGTA 813
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 701 GTTTGTTATCAGCTTGGTACTGTTTTGATAAGGTTGGTTTGGGTTTTCAGTTGTATAGTA 760
Query 814 GTAACAACAATTTGCCT-TATGTTTCTTGCTCAAATTCATAATTGGTGTTTACCAATTTT 872
||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 761 GTAGTAACAATTTGCCTATATGTTTCTTGCTCAAATTCATCATTGGTGTTTACCAATTTT 820
Query 873 ATTGT-CGAAAAGCTGTGTACAA-CAATTCAAATACTGTATTTCAAGTGTAATGTAAAAC 930
||| | |||||| |||||||| | || | ||||||||||||||||| ||||||| ||||
Sbjct 821 ATT-TACGAAAAACTGTGTACCATCA-TCCAAATACTGTATTTCAATTGTAATGCAAAAG 878
Query 931 ATTTTATC 938
|||||||
Sbjct 879 GTTTTATC 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5