BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08350.1
Length=3410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327088 jgi|Araly1|327088|fgenesh1_pm.C_scaffold_6002308 2427 0.0
Ahg482364 jgi|Araly1|482364|fgenesh2_kg.4__1424__AT2G34210.1 1520 0.0
> Ahg327088 jgi|Araly1|327088|fgenesh1_pm.C_scaffold_6002308
Length=3156
Score = 2427 bits (1314), Expect = 0.0
Identities = 1451/1516 (96%), Gaps = 13/1516 (1%)
Strand=Plus/Plus
Query 118 ATGCCGCGAAGCAGAGACGAAGACGATGAATTAGACGGTGACTACGAAGCATTAGATTTa 177
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || |||
Sbjct 1 ATGCCGCGAAGCAGAGACGAAGACGATGAAATAGACGGAGACTACGAAGGATTGGAATTA 60
Query 178 gaggaagaagaggaagaagacgaagaagaagaagaagagagaggaagaggtggcggcggt 237
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 GAGGAAGAAGAGGAAGAAGAC---GAAGAAGAAGAAGAGAGAGGAAGAGGCGGCGGCGGT 117
Query 238 tctagacggaagagaggaagaTCGAATTTTATCGATGATTATGCTGAGGAAGATTCTCAG 297
||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 118 TCTAGGCGGAAGAGAGGAAGATCGAATTTTATTGATGATTATGCGGATGAAGATTCTCAG 177
Query 298 GAAGAAGATGATGACGATGAAGATTATGGTAGTAGCCGTGGAGGTAAAGGAGCTGCTAGT 357
|||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 178 GAAGAAGACGATGATGATGAAGATTAT-G--GTAGCCGTGGAGGTAAAGGAGCTGCTAGT 234
Query 358 AAGAGAAAGAAGCCATCTGCTTCTATTTTCTTAGACCGAGAAGCTCATCAAGTTGATGAT 417
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 235 AAGAGAAAGAAGCCTTCTGCTTCCATTTTCTTAGACCGAGAAGCTCATCAGGTTGATGAT 294
Query 418 GAAGACGAAGAGGAAGAAGATGAAGCAGAAGATGATTTTATTGTGGATAATGGAACGGAC 477
|| || |||||||| ||||| |||| ||||||||| |||||||||||| ||||||||||
Sbjct 295 GAGGAGGAAGAGGACGAAGAAGAAGGAGAAGATGACTTTATTGTGGATGCTGGAACGGAC 354
Query 478 CTTCCGGATGAGCGTGGTGATAGACGGTACGAACGGAGGTTTCTTCCTCGAGACGAAAAT 537
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 355 CTTCCTGATGAGCGTGGTGATAGACGGTACGAACGGAGGTTTCTTTCTCGTGACGAAAAT 414
Query 538 GATGAGGATGTGGAAGATCTCGAGAGAAGAATTCAAGAGCGGTTCTCCTCTAGGCATCAT 597
|||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||
Sbjct 415 GATGAGGATGTGGAAGATCTTGAGAGAAGAATTCAAGAGCGG-T-T-CTCTAGGCATCAT 471
Query 598 GAAGAATATGATGAAGAAGCTACAGAAGTTGAGCAACAAGCGCTTTTGCCATCAGTCCGT 657
|||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct 472 GAAGAATATGATGAAGAAGCCACTGATGTTGAGCAACAAGCGCTTTTGCCATCAGTTCGC 531
Query 658 GATCCGAAATTGTGGATGGTGAAATGTGCGATTGGCCGTGAAAGGGAGGTTGCTGTTTGT 717
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 532 GACCCGAAATTGTGGATGGTGAAATGTGCGATTGGTCGCGAAAGGGAGGTTGCTGTTTGT 591
Query 718 CTTATGCAAAAATTTATAGATCGAGGAGCTGATTTGCAGATTAGATCTGTTGTTGCCCTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTTATGCAAAAATTTATAGATCGAGGAGCTGATTTGCAGATTAGATCTGTTGTTGCCCTT 651
Query 778 GACCATCTTAAGAATTTTATATATGTTGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCA 837
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GACCATCTTAAGAATTATATATATGTTGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCA 711
Query 838 ATCAAGGGCATGAGGAATATATATGCTAATCAGAAGATCTTACTTGTCCCGATAAGAGAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ATCAAGGGCATGAGGAATATATATGCTAATCAGAAGATCTTACTTGTCCCGATAAGAGAA 771
Query 898 ATGACAGATGTTCTTTCTGTTGAGAGCAAAGCCATTGATCTATCACGGGATACCTGGGTT 957
||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 772 ATGACAGATGTGCTTTCTGTTGAAAGCAAAGCAATTGATCTATCTCGGGATACCTGGGTT 831
Query 958 AGAATGAAAATCGGGACGTATAAAGGTGATCTTGCAAAGGTAGTTGATGTTGATAATGTG 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 832 AGAATGAAAATCGGGACGTATAAAGGTGATCTTGCAAAGGTAGTTGACGTTGATAATGTG 891
Query 1018 CGTCAGAGGGTCACAGTCAAGTTAATCCCAAGAATTGATCTGCAGGCACTAGCCAGTAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CGTCAGAGGGTCACAGTCAAGTTAATCCCAAGAATTGATCTGCAGGCACTAGCCAGTAAG 951
Query 1078 CTGGACGGAAGAGAAGTTTCAAAGAAAAAAGCCTTTGTTCCACCTCCACGTTTCATGAAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGGACGGAAGAGAAGTTTCAAAGAAAAAAGCCTTTGTTCCACCTCCACGTTTCATGAAC 1011
Query 1138 ATTGATGAAGCGAGGGAACTGCACATACGTGTTGAGCGTCGGCGTGATCACATGACTGGT 1197
||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 1012 ATTGATGAAGCAAGGGAATTGCACATACGTGTTGAGCGTCGGCGTGATCCCATGACGGGT 1071
Query 1198 GATTACTTTGAAAATATTGGTGGCATGCTTTTCAAAGATGGGTTTCAT-TACAAA-CAAG 1255
||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || |
Sbjct 1072 GATTACTTTGAAAATATTGGTGGCATGCTTTTCAAAGATGGTTTT-ATGTACAAAACA-G 1129
Query 1256 TATCATTGAAGTCCATCACTGTTCAGAATGTTACACCAACTTTTGACGAACTTGAAAAAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TATCATTGAAGTCCATCACTGTTCAGAATGTTACACCAACTTTTGACGAACTTGAAAAAT 1189
Query 1316 TCAATAAACCAAGTGAAAATGGAGAGGGCGACTTTGGTGGTCTGTCAACATTATTTGCAA 1375
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1190 TCAATAAACCAAGTGAAAATGGAGAGGGCGATTTTGGTGGTCTGTCAACTTTATTTGCAA 1249
Query 1376 ACAGAAAGAAAGGTCATTTCATGAAGGGTGATGCAGTTATTGTTATCAAGGGGGATCTGA 1435
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1250 ACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCAGTTATTGTTATAAAGGGGGATCTGA 1309
Query 1436 AAAACTTGAAGGGTTGGGTTGAGAAAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAG 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AAAACTTGAAGGGTTGGGTTGAGAAAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAA 1369
Query 1496 TGAAAGGTCTCCCTGATCCTCTTGCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAAC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TGAAAGGTCTCCCTGATCCTCTTGCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAAC 1429
Query 1556 CTGGAAATCATGTGAAGGTTGTCTCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCA 1615
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1430 CTGGAAATCATGTGAAGGTTGTTTCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCA 1489
Query 1616 AAGTTGATCAACACGT 1631
||||||||||||||||
Sbjct 1490 AAGTTGATCAACACGT 1505
Score = 1493 bits (808), Expect = 0.0
Identities = 853/875 (97%), Gaps = 2/875 (0%)
Strand=Plus/Plus
Query 2369 CAGTTGATCGGGGTGCAATATCAGATAATGTTGCGACAACACCGTTTAGAGATACATCTC 2428
|||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2284 CAGTTGATCGGGATGCAATATCAGATAATGTTGCGACAACACCCTTT--AGATACATCTC 2341
Query 2429 GGTATAGTATGGGAAGCGAAACACCTATGCATCCTTCACGGACTCCACTTCATCCTTATA 2488
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2342 GGTATAGTATGGGAAGCGAAACACCTATGCATCCTTCTCGGACTCCACTTCATCCTTATA 2401
Query 2489 TGACTCCAATGCGGGACTCTGGAGCTACACCAATCCATGATGGAATGAGGACACCCATGC 2548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2402 TGACTCCAATGCGGGACTCTGGAGCTACACCAATCCATGATGGAATGAGGACACCCATGC 2461
Query 2549 GTGATAGAGCTTGGAATCCTTACACGCCTATGAGTCCACCTAGGGATAACTGGGAAGATG 2608
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2462 GAGATAGAGCGTGGAATCCTTACACGCCTATGAGTCCACCAAGGGATAACTGGGAAGATG 2521
Query 2609 GAAATCCGGGATCTTGGGGAACGAGTCCTCAATATCAGCCGGGAAGTCCTCCTTCACGGG 2668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2522 GAAATCCGGGATCTTGGGGAACGAGTCCTCAATATCAGCCGGGAAGTCCTCCTTCACGGG 2581
Query 2669 CATATGAAGCACCAACGCCTGGCTCAGGATGGGCTAGTACTCCTGGTGGTAGTTACTCGG 2728
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2582 CATATGAAGCACCAACTCCTGGCTCAGGATGGGCTAGTACTCCTGGTGGTAGTTACTCGG 2641
Query 2729 ATGCGGGGACACCTAGAGACCATGGTTCAGCTTATGCTAATGCCCCAAGTCCTTACCTGC 2788
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2642 ATGCGGGGACGCCTAGAGACCATGGTTCAGCTTATGCTAATGCCCCAAGTCCTTACCTGC 2701
Query 2789 CATCAACACCTGGGCAACCCATGACACCAAGCTCGGCTTCATACTTACCTGGTACTCCCG 2848
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2702 CATCGACACCTGGGCAACCCATGACACCAAGCTCGGCTTCATACTTACCTGGAACTCCTG 2761
Query 2849 GAGGACAACCAATGACTCCTGGAACTGGCCTCGATGTCATGTCTCCTGTTATAGGTGGGG 2908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2762 GAGGACAACCAATGACTCCTGGAACTGGCCTCGATGTCATGTCTCCTGTTATAGGTGGGG 2821
Query 2909 ATGCTGAAGCATGGTTCATGCCCGATATTTTGGTTGACATACACAAGGCTGGAGAGGACA 2968
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2822 ATGCTGAAGCATGGTTCATGCCCGATATTTTGGTTGACGTACACAAGGCTGGAGAAGACA 2881
Query 2969 CCGATGTGGGCGTCATCCGAGATGTTTCGGATGGAACGTGTAAAGTGTCTCTCGGGTCCA 3028
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2882 GCGATGTGGGCGTCATCCGAGATGTTTCGGATGGAACGTGTAAAGTGTCTCTCGGGTCCA 2941
Query 3029 GCGGTGAAGGTGACACTATAATGGCCCTCCCAAGCGAACTGGAGATAATTCCTCCGAGGA 3088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2942 GCGGTGAAGGTGACACTATAATGGCCCTCCCAAGCGAACTGGAGATAATTCCTCCGAGGA 3001
Query 3089 AATCCGATCGTGTCAAAATAGTTGGCGGTCAGTATCGTGGGTCTACAGGTAAGCTGATCG 3148
|||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 3002 AATCTGATCGTGTCAAAATAGTTGGTGGCCAATATCGTGGGTCTACAGGTAAGCTGATCG 3061
Query 3149 GAATCGACGGGTCTGACGGTATCGTTAAGATAGATGATAATCTTGACGTCAAGATTCTGG 3208
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3062 GAATCGACGGGTCTGACGGAATCGTTAAGATAGATGATAATCTTGACGTCAAGATTCTGG 3121
Query 3209 ACCTGGCCTTATTAGCCAAGTTTGTGCAACCGTGA 3243
||||||||||||||||||||||||||||||| |||
Sbjct 3122 ACCTGGCCTTATTAGCCAAGTTTGTGCAACCTTGA 3156
Score = 1230 bits (666), Expect = 0.0
Identities = 696/711 (98%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 1661 AACATGTCCGAGTGTTTGCTGATCATGTTGTTGAGAGTTCAGAAGTGACAACTGGTGTTA 1720
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 AACACGTTCGAGTGTTTGCTGATCATGTTGTTGAGAGCTCAGAAGTGACAACTGGTGTTA 1558
Query 1721 CCAAAATTGGGGACTATGAACTTCATGATCTTGTGCTTCTGGATAACCTGAGCTTTGGAG 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CCAAAATTGGGGACTATGAACTTCATGATCTTGTGCTTCTGGATAACCTGAGCTTTGGAG 1618
Query 1781 TAATTATACGACTAGAGAATGAAGCTTTTCAGGTTCTTAAAGGGGTTCCTGACAGACCAG 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TAATTATACGACTAGAGAATGAAGCTTTTCAGGTTCTTAAAGGGGTTCCTGACAGACCAG 1678
Query 1841 AGGTTGCTCTTGTCAAACTCAGAGAAATCAAATGCAAACTTGAGAAGAAAATCAATGTTC 1900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1679 AGGTTGCTCTTGTCAAACTCAGAGAAATCAAATGCAAAATTGAGAAGAAAATCAATGTTC 1738
Query 1901 AAGATCGCTACAAAAATGTCATTGCTGTGAAAGATGACGTCAGAGTGATCGAGGGTCCTA 1960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1739 AAGATCGCTACAAAAATGTCATTGCTGTGAAAGATGACGTCAGAGTCATCGAGGGTCCTA 1798
Query 1961 GCAAAGGTAAACAAGGTCCTGTAAAGCATATCTACAAAGGAGTCTTATTTATATATGATC 2020
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1799 GCAAAGGTAAACAAGGTCCGGTGAAGCATATCTACAAAGGAGTCTTATTTATATATGATC 1858
Query 2021 GACATCACCTTGAGCATGCTGGATTTATCTGCGCTAAATGCACATCATGCATTGTTGTTG 2080
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GGCATCACCTTGAGCATGCTGGATTTATCTGCGCTAAATGCACATCATGCATTGTTGTTG 1918
Query 2081 GTGGATCACGTTCTGGTGCTAATAGAAATGGTGGTGATTCGCTTTCAAGGTATGGCAATT 2140
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1919 GTGGATCACGTTCTGGCGCTAATAGAAATGGTGGTGATTCTTTTTCAAGGTATGGCAATT 1978
Query 2141 TCAAGGCACCTGCCCCAGTACCCTCATCTCCAGGAAGATTTCAACGTGGCAGAGGCGGAG 2200
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1979 TCAAGGCACCTGCCCCAGTACCCTCATCCCCAGGAAGATTTCAACGTGGCAGAGGCGGAG 2038
Query 2201 GATATAATAACTCTGGAGGGAGGCATGGGGGTGGAAGAGGACGGGGAGACGATTCTTTAT 2260
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2039 GATATAATAACTCTGGAGGGAGGCATGGGGGCGGAAGAGGACGGGGAGACGATTCTTTGT 2098
Query 2261 TGGGTACTACTGTTAAAATCCGTCTAGGACCTTTCAAGGGGTATAGGGGACCTGTAGTAG 2320
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TGGGTACTACTGTTAAGATCCGTCTAGGACCTTTCAAGGGGTATAGGGGACCTGTAGTAG 2158
Query 2321 AAGTGAAAGGAAATTCAGTGCGTGTAGAACTTGAGATGAAGATTGTGACAG 2371
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 AAGTGAAAGGAAATTCAGTGCGTGTAGAACTTGAGATGAAGATTGTGACAG 2209
> Ahg482364 jgi|Araly1|482364|fgenesh2_kg.4__1424__AT2G34210.1
Length=2937
Score = 1520 bits (823), Expect = 0.0
Identities = 1260/1472 (86%), Gaps = 26/1472 (2%)
Strand=Plus/Plus
Query 626 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGTGATCCGAAATTGTGGATGGTGAAATGTG 685
||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||
Sbjct 428 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGCGACCCGAAATTGTGGTTGGTCAAATGTG 487
Query 686 CGATTGGCCGTGAAAGGGAGGTTGCTGTTTGTCTTATGCAAAAATTTATAGATCGAGGAG 745
|||||||||||||||| || |||||||||||||||||||||||| | |||||| |||||
Sbjct 488 CGATTGGCCGTGAAAGAGAAGTTGCTGTTTGTCTTATGCAAAAAATCATAGATAGAGGAT 547
Query 746 CTGATTTGCA-GATTAGATCTGTTGTTGCCCTTGACCATCTT-AAGAATTTTATATATGT 803
| || || || ||||||||||| | |||||||||| |||||| || || | | |||| |
Sbjct 548 CAGAGTT-CAAGATTAGATCTGCTATTGCCCTTGATCATCTTCAA-AACTATGTATACAT 605
Query 804 TGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCAATCAAGGGCATGAGGAATATATATGC 863
|||||| || | ||||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 606 TGAAGCGGATATGGAAGCTCATGTGAAAGAGGCTATCAAGGGCATGCGGAATATTTATGC 665
Query 864 TAATCAGAAGATCTTACTTGTCCCGATAAGAGAAATGACAGATGTTCTTTCTGTTGAGAG 923
|||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 666 TAATCAGAAGATTTTACTTGTCCCCATAAAAGAAATGACAGATGTTCTTTCTGTTGAAAG 725
Query 924 CAAAGCCATTGATCTATCACGGGATACCTGGGTTAGAATGAAAATCGGGACGTATAAAGG 983
||||| || |||||||| || ||||| ||||||||||||||| | |||| ||||| ||
Sbjct 726 TAAAGCAATCGATCTATCCCGTGATACATGGGTTAGAATGAAACTTGGGATATATAAGGG 785
Query 984 TGATCTTGCAAAGGTAGTTGATGTTGATAATGTGCGTCAGAGGGTCACAGTCAAGTTAAT 1043
|||||| || |||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 786 TGATCTAGCTCAGGTGGTTGATGTTGATAATGTGCGTAAGAGGGTCACAGTCAAGTTGAT 845
Query 1044 CCCAAGAATTGATCTGCAGGCACTAGCCAGTAAGCTGGACGGAAGAGA-AGTTTCAAAGA 1102
||||||||||||||||||||| ||||||| ||||||||| |||||||| | | |||| ||
Sbjct 846 CCCAAGAATTGATCTGCAGGCTCTAGCCAATAAGCTGGAAGGAAGAGAGAATGTCAA-GA 904
Query 1103 AAAAAGCCTTTGTTCCACCTCCACGTTTCATGAACATTGATGAAGCGAGGGAACTGCACA 1162
| ||||| |||| |||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 905 AGAAAGCTTTTGCTCCACCTCCACGTTTCATGAACATTGATGAGGCAAGGGAACTTCACA 964
Query 1163 TACGTGTTGAGCGTCGGCGTGATCACA-TGACTGGTGATTACTTTGAAAATATTGGTGGC 1221
|||||||||||| |||||||||| || |||| ||||| |||||| ||||| | |||
Sbjct 965 TACGTGTTGAGCACCGGCGTGATC-CAATGACGGGTGACCCCTTTGAGAATATCGATGGT 1023
Query 1222 ATGCTTTTCAAAGATGGGTTTCATTACAA-ACAAGTATC-ATTGAAGTCCATCACTGTTC 1279
||||||||||||||||| |||| |||||| | ||||||| | |||||| || ||| ||
Sbjct 1024 ATGCTTTTCAAAGATGGTTTTCTTTACAAGA-AAGTATCGAC-GAAGTCAATTGCTGCTC 1081
Query 1280 AGAATGTTACACCAACTTTTGACGAACTTGAAAAATTCAATAAACCAAGTGAAAATGGAG 1339
||||| |||||||||| || || |||||||||| |||||| | ||||| ||||||||| |
Sbjct 1082 AGAATATTACACCAACCTTCGATGAACTTGAAAGATTCAAGAGACCAAATGAAAATGGGG 1141
Query 1340 AGGGCGACTTTGGTGGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGTCATTTCATGA 1399
|| |||||| | || || || || ||||||||||| |||||||| |||||||||||||
Sbjct 1142 AGATCGACTTCGTTGATCCCTCCACTTTATTTGCAAATAGAAAGAAGGGTCATTTCATGA 1201
Query 1400 AGGGTGATGCAGTTATTGTTATCAAGGGGGATCTGAAAAACTTGAAGGGTTGGGTTGAGA 1459
| |||||||| ||||||||||||||||||||||| | |||||| ||||||||| ||||||
Sbjct 1202 AAGGTGATGCGGTTATTGTTATCAAGGGGGATCTTATAAACTTAAAGGGTTGGATTGAGA 1261
Query 1460 AAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAG-TGAAAGGTCTCCCTGATCCTCTT 1518
||||||||||||| ||||| ||||||||||| ||| |||||||||| ||| ||||| ||
Sbjct 1262 AAGTAGATGAAGAGAATGTTCTTATCAGATC-GAATATGAAAGGTCTTCCTAATCCTATT 1320
Query 1519 GCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAACCTGGAAATCATGTGAAGGTTGTC 1578
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1321 GCGGTAAATGAGAGAGAGCTTTGCAAATACTTTGAACCTGGAAATTTTGTGAAGGTTGTG 1380
Query 1579 TCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCAAAGTTGATCAACACGTGCTTATC 1638
||||| | ||||||||||| ||| |||||| |||||||||||||||| || ||||||||
Sbjct 1381 TCTGGCATCCATGAAGGAGGAACTGGCATGATTGTCAAAGTTGATCAGCATATGCTTATC 1440
Query 1639 ATTCTGTCTGACACGACCAAAGAACATGTCCGAGTGTTTGCTGATCATGTTGTTGAGAGT 1698
||||||||||| || |||||||||||| | || || || ||||||||||| | |||||
Sbjct 1441 ATTCTGTCTGATACAACCAAAGAACATATTCGCGTCTTCGCTGATCATGTCGCCAAGAGT 1500
Query 1699 TCAGAAGTGAC-AACTGGTGTTACCAAAATTGGGGACTATGAACTTCATGATCTTGTGCT 1757
|||||||||| || || ||| || |||||||| |||||||||||||||||||||||| |
Sbjct 1501 GCAGAAGTGACTAA-TGCTGTCACAAAAATTGGAGACTATGAACTTCATGATCTTGTGAT 1559
Query 1758 TCTG-GATAACCTGAGCTTTGGAGTAATTATACGACTAGAGAATGAAGCTTTTCAGGTTC 1816
||| | | || |||||||||||||||| ||| ||| || | ||||||| | ||| |||
Sbjct 1560 TCTAAG-TGACTTGAGCTTTGGAGTAATCATAAAACTTGATAGTGAAGCTATCCAGATTC 1618
Query 1817 TTAAAGGGGTTCCTGACAGAC-CAGAGGT-TGCTCTTGTCAAA-CTCAGAGAAATCAAAT 1873
||||||||||||||||||| | ||||||| | || |||||||| | ||| ||||| ||||
Sbjct 1619 TTAAAGGGGTTCCTGACAG-CTCAGAGGTCT-CTATTGTCAAAGC-CAGCGAAATAAAAT 1675
Query 1874 GCAAACTT-GAGAAGAAAATCAATGTTCAAGATCGCTACAAAAATGTCATTGCTGTGAAA 1932
|||| || | |||||||| |||||||||||| || |||||||||||||| || ||||||
Sbjct 1676 ACAAAATTTG-GAAGAAAAGCAATGTTCAAGACCGTTACAAAAATGTCATCGCGGTGAAA 1734
Query 1933 GATGACGTCAGAGTGATCGAGGGTCCTAGCAAAGGTAAACAAGGTCCTGTAAAGCATATC 1992
|||| ||||| || || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 1735 GATGTTGTCAGGGTCATTGAGGGTCCTAGCAAAGGTAAACAAGGTCCAGTGGTGCAAATC 1794
Query 1993 TACAAAGGAGTCTTATTTATATATGATCGACATCACCTTGAGCATGCTGGATTTATCTGC 2052
||||||||||| || |||||| |||| || ||| || |||| || ||||||||||||||
Sbjct 1795 TACAAAGGAGTGTTGTTTATACATGACCGGCATAACTTTGAACACACTGGATTTATCTGC 1854
Query 2053 GCTAAATGCACATCATGCATTGTTGTTGGTGG 2084
||| |||| |||| || || ||||||||||
Sbjct 1855 ACTAGATGCTCATCTTGTGTTCTTGTTGGTGG 1886
Score = 189 bits (102), Expect = 1e-46
Identities = 329/436 (75%), Gaps = 25/436 (6%)
Strand=Plus/Plus
Query 2809 ATGACACCAAGCTCGGCTTCATACTTACCTGGTACTCCCGGAGGACAACCAATGACTCCT 2868
|||||||||||||| ||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 2500 ATGACACCAAGCTCAGCTTCCTACCTACCTACCACACCCGGAGGACAACCAATGACTCCT 2559
Query 2869 GGAACTGGCCTCGATGTCATGTCTCCTG-TTATAGGTGGGGATGCTGAAGCATGGTTCAT 2927
||||| | |||||||||||||||| || || ||||||| ||||| ||| || |||| |
Sbjct 2560 GGAACCGATCTCGATGTCATGTCTCATGATT-TAGGTGGAGATGCAGAAACAAGGTTTGT 2618
Query 2928 GCCCGATATTTTGGTTGACATACACAAGGCTGGAGAGGACACCGATGTGGGCGTCATCCG 2987
||| | ||||||||| || ||||||| ||||||||||| | | || ||||||||
Sbjct 2619 GCCTGGTATTTTGGTCAACGTACACAAAGCTGGAGAGGATAGTAAACCCGGTGTCATCCG 2678
Query 2988 AGATGTT-T-C-GGATGGAACGTGTAAAGT-GTCTCTCGGGTC-CAGCGGTGAAGGTGAC 3042
||||||| | | |||||| | ||| ||| | | || || | ||| |||||||| |
Sbjct 2679 AGATGTTCTTCCGGATGGCTCATGTGTAGTCG-CACTTGGA-CACAGAGGTGAAGGCGGG 2736
Query 3043 ACTATAATGGCC-CTCCCAAGCGAACTGGAGA-TAATTCCTCCGAGGAA-ATCCGATCGT 3099
|| |||||||| | | || | || || || || || ||| | ||| | | || |||
Sbjct 2737 ACGATAATGGCGACACAGAA-CAAAGTG-AGCCTAGTTTGTCCAAAGAAGAAC-GAACGT 2793
Query 3100 GTCAAAATAGTTGGCGGTCA-GTATCGTGGGTCTACAGGTAAGCTGATCGG--AATCGAC 3156
|| || || |||| || || |||| |||| || ||||||||| | || || || |||
Sbjct 2794 GTGAAGATTCTTGGAGG-CAAGTATGGTGGTTCAACAGGTAAGGTCATTGGTGAA--GAC 2850
Query 3157 GGGTCTGACGGTATCGTTAAGATAGATGATAA-TCTTGACGTCAAGATTCTGGACCTGGC 3215
|| | ||| |||| |||||| ||||||| || ||| || |||||||| || | |||||
Sbjct 2851 GGATGGGACAGTATAGTTAAGCTAGATGA-AAGTCTCGATGTCAAGATAATGAAGCTGGC 2909
Query 3216 CT-TATTAGCCAAGTT 3230
| |||||||||||||
Sbjct 2910 -TATATTAGCCAAGTT 2924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128748769459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5