BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08450.1
Length=3705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489751 jgi|Araly1|489751|fgenesh2_kg.6__2885__AT4G08450.1 3847 0.0
Ahg915416 jgi|Araly1|915416|Al_scaffold_0008_167 562 7e-159
Ahg906176 jgi|Araly1|906176|Al_scaffold_0003_3304 276 1e-72
Ahg494325 jgi|Araly1|494325|fgenesh2_kg.8__141__AT5G46470.1 141 4e-32
> Ahg489751 jgi|Araly1|489751|fgenesh2_kg.6__2885__AT4G08450.1
Length=2755
Score = 3847 bits (2083), Expect = 0.0
Identities = 2546/2770 (92%), Gaps = 30/2770 (1%)
Strand=Plus/Plus
Query 10 TCTTCTTCTCATAACT-GGGTTTACGACGTTTTCACAAGCTTCAGCGGGGAAGATATCCG 68
|||||||||| ||||| ||| ||||||||||||||| |||||||| ||||||||| ||||
Sbjct 1 TCTTCTTCTCGTAACTCGGG-TTACGACGTTTTCACGAGCTTCAGTGGGGAAGATGTCCG 59
Query 69 TGTAACTTTCCTCACCCACTTTCTCAAGGAGCTTGATCGAAAAATGATTATTGCTTTCAA 128
|||||||||||||||||||||| |||||||||| || || |||||||| |||||||||||
Sbjct 60 TGTAACTTTCCTCACCCACTTTTTCAAGGAGCTAGACCGGAAAATGATCATTGCTTTCAA 119
Query 129 AGACAATGAGATTGAGAGAGGGAACTCGATCGGTACCGAGCTTATACAGGCGATAAAGGA 188
||||||||||||||||||||| |||| || ||| || |||||||| |||||||||||||
Sbjct 120 AGACAATGAGATTGAGAGAGGCCACTCAATTGGTCCCAAGCTTATAAAGGCGATAAAGGA 179
Query 189 TTCGAGGATCGCGGTGGTTGTGTTCTCCAAAAAATACTCTTCTTCGAGTTGGTGTTTGAA 248
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 180 TTCGAGGATCGCGGTGGTTGTGTTCTCCAAAAACTACTCTTCTTCCAGCTGGTGTTTGAA 239
Query 249 TGAGTTGGTAGAGATTGTGAATTGCAAGGAAATTGTGATACCAGTTTTCTATGATTTAGA 308
||||||| ||||||||||||| ||| |||||||||| |||||| ||||||| ||||| ||
Sbjct 240 TGAGTTGTTAGAGATTGTGAAATGCCAGGAAATTGTTATACCAATTTTCTACGATTTGGA 299
Query 309 TCCTTCTGATGTTAGGAAACAAGAGGGAGAATTTGGAGAGTCTTTTAAAG-AGACTTGCA 367
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 300 TCCTTCTGATGTTAGGAAACAAGAGGGAGAATTTGGAGAGTCTTTT-AAGAAGACTTGCA 358
Query 368 AGAACAGAACAGATTATGAGATACAACGTTGGGGCCAAGCGTTGACCAATGTAGCAAATA 427
||||||||||| | ||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 359 AGAACAGAACAAAGGATGAGATACAACGTTGGCGTGAAGCGTTGACCAATGTGGCAAATA 418
Query 428 TTGCTGGATATCACACTAGGAAACCGAATAACGAAGCAAAATTGATTGAAGAAATCACTA 487
||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| | |
Sbjct 419 TTGCTGGATATCATACTGGGAAACCGAATGACGAAGCAAAATTGATTGAAGAAATCGCGA 478
Query 488 ATGATGTTTTGGATAAACTAATGAAGTTAACACCATCGAAAGATTTTGATGAATTTTTTG 547
|| | |||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 479 ATAACGTTTTGGATAAATTGATGAAGTTAACACCATCCAAAGATTTTGACGAATTTTTTG 538
Query 548 GCATCGAAGATCATATCAAAGAGCTGAGTTTATTATTGTGCTTGGAATCTGAGGAAGTGA 607
|||||||||| ||||||||||| |||||| |||| ||||||||||||||| |||||||||
Sbjct 539 GCATCGAAGAGCATATCAAAGAACTGAGTGTATTGTTGTGCTTGGAATCTCAGGAAGTGA 598
Query 608 GAATGGTTGGGATATGGGGTCCTACGGGGATTGGTAAGACAACCATTGCAAGAGCTTTAT 667
| |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 599 GGATGGTTGGTATATGGGGTGCTACGGGAATTGGCAAGACAACCATTGCAAGAGCTTTAT 658
Query 668 TTAATCGAATCTACCGTCACTTCCAAGGTAGGGTTTTTATAGACAGAGCTTTTATATCTA 727
| |||||| |||| ||||| || |||||||| |||||||||||| ||||||| |||||||
Sbjct 659 TCAATCGACTCTATCGTCATTTTCAAGGTAGAGTTTTTATAGACCGAGCTTTCATATCTA 718
Query 728 AGAGTATGGCTATTTATAGTAGAGCAAACTCGGACGACTATAACTTGAAGTTGCATTTGC 787
||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 719 AGAGTATGGATATTTATAGTAGAGCCAACCCGGACGACTATAACTTGAAGTTGCATTTGC 778
Query 788 AAGAAAAGTTGTTGTCTAAACTTTTAGACaaaaaaaaCTTGGAGATAAATCACCTAGATG 847
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGAAAAGTTTTTGTCTAAACTTTTAGACAAAAAAAACTTGGAGATAAATCACCTAGATG 838
Query 848 CTGTGAAAGAGAGGCT-AAGGCAAATGAAAGTTCTTATCTTTATTGATGATTTGGATGAT 906
| |||||||||||||| || | ||||||| |||||| |||||||||||||||||||||||
Sbjct 839 CGGTGAAAGAGAGGCTGAA-GAAAATGAAGGTTCTTCTCTTTATTGATGATTTGGATGAT 897
Query 907 CAAGTGGTGCTAGAAGCCTTAGCCTGTCAAACTCAGTGGTTTGGGCATGGAAGTAGAATC 966
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 898 CAAGTGGTGCTAGAAGCCTTGGCGTGTCAAACTCAGTGGTTTGGGGATGGAAGTAGAATC 957
Query 967 ATTGTGATTACAAAAGATAAGCATCTCTTAAGGGCTTATGGGATTGATCATATATATGAG 1026
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 958 ATTGTGATTACAAAAGATAAGCATCTCTTAAGGGCTTATGGGATTGATAATATTTATGAG 1017
Query 1027 GTTCTTCTCCCGTCGAAAGACCTTGCTATTAAGATGTTTTGTCGATCTGCTTTTAGG-AA 1085
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1018 GTTCTTCTCCCGTCAAAAGACCTTGCTATTAAGATGTTTTGTCGGTCTGCTTTTAGGCAA 1077
Query 1086 AGACTCTCCACCCAATGGTTTTATAGAACTTGCTTATGATGTTGTAAAACGTGCAGGTAG 1145
| |||||||||| |||||||||||||| ||| | ||||| |||||| |||||||||| ||
Sbjct 1078 A-ACTCTCCACCTAATGGTTTTATAGAGCTTTCCTATGAAGTTGTACAACGTGCAGGGAG 1136
Query 1146 TCTTCCTTTGGGTCTTAACATTTTAGGTTCGTATTTACGGGGTAGGAGTAAGGAGGA-TT 1204
|||||||||||||||||||||||| ||||| ||||| |||||||||| |||||| || ||
Sbjct 1137 TCTTCCTTTGGGTCTTAACATTTTGGGTTCTTATTTGCGGGGTAGGAATAAGGA-GATTT 1195
Query 1205 GGATAGATATGATGCCGGGGCTTCGTAATAAACTAGACGGGAAAATTCAGAAAACACTTA 1264
|||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1196 GGATGGAAATGATGCCGGGATTTCGTAATAAACTAGACGGGAAAATTGAGAAAACACTTA 1255
Query 1265 GAGTCAGCTACGACGGGTTGGCTAGCGAAGACGATCAAGCGATATTTCGTCATATTGCAT 1324
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||
Sbjct 1256 GAGTCAGCTACGACGGGTTGGATAGCAAAGACGATCAGGCGATATTTCGTCATATCGCAT 1315
Query 1325 GTATTTTTAATTTTGAGGCATGCAGTGACATCAAGAAACTGCTTGAAGATAGTGGCTTGA 1384
|||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 GTATTTTTAACTTTGAGACATGCAGTGACATCAAGAAACTGCTTGCAGATAGTGGCTTGA 1375
Query 1385 ATGTCACTAATGGGCTTATAAACCTTGTCGATAAGTCCCTCATACGTATAGAACCAAAGC 1444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1376 ATGTCACTAATGGGCTTATAAACCTTGTCGATAAGTCCCTCATACGTATAAAACCAAAGC 1435
Query 1445 AGAAAACTGTGGAGATGCATTGTTTGTTACAAGAAACGGCTAGAGAAATTATTCGTGCAC 1504
||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct 1436 AGAAAACTGTGGAGATGCATTGTTTGTTACAAGAAACGGGTAGAGAAATTGTTCGAGCAC 1495
Query 1505 AGTCTTTTGATGATCCTGGAAAACGAGAATTCCTTGTGGATGGGAAGGATA-TTGCTGAT 1563
||||| ||||||||||| ||||||||||||| || |||||||||||||||| || | |||
Sbjct 1496 AGTCTGTTGATGATCCTAGAAAACGAGAATTTCTAGTGGATGGGAAGGATATTTAC-GAT 1554
Query 1564 GTCCTAGATAATTGCAGTGGTACAAGAAAA-GTCTTAGGTATATCATTGGATATGGATGA 1622
||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||| |||||
Sbjct 1555 GTCCTAGATGATTGCAGTGGTACAA-AAAAGGTCTTAGGTATATCACTGGATATAGATGA 1613
Query 1623 GATTGAAGAGTTGCATCTACAAGTAGACGCCTTCAAAAAG-ATGCTTAATCTCCGTTTTC 1681
|||||| |||||||||||||| |||||||||||| ||| | |||| ||||||||||||||
Sbjct 1614 GATTGATGAGTTGCATCTACATGTAGACGCCTTC-AAAGGAATGCGTAATCTCCGTTTTC 1672
Query 1682 TAAAACTTTACACAAATACAAATATATCAGAAAAAGAAGACAAATTGCTCTTACCTAAAG 1741
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 1673 TAAAACTTTACACAAATACAAAAATATCAGAAAAAGAAGACAGATTGCTCTTACCCAAAG 1732
Query 1742 AATTCAACTATTTACCCAATACACTCAGATTACTAAGTTGGCAAAGGTTTCCAATGAGAT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AATTCAACTATTTACCCAATACACTCAGATTACTAAGTTGGCAAAGGTTTCCAATGAGAT 1792
Query 1802 GTATGCCTTCTGAtttttttCCTAAATATCTTGTTAAACTTCTAATGCCGGGGAGCAAGC 1861
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1793 GTATGCCTTCTGAATTTTTTCCTAAATATCTTGTTAAACTTATAATGACGGGGAGCAAGC 1852
Query 1862 TCGAGAAGCTGTGGGACGGAGTAATGCCGCTTCAATGCCTCAAGAATATGAATTTGTTTG 1921
|||||||| ||||||| ||||| ||||| |||||||||||||||| ||| ||||||||||
Sbjct 1853 TCGAGAAGTTGTGGGAAGGAGTGATGCCACTTCAATGCCTCAAGACTATCAATTTGTTTG 1912
Query 1922 GATCTGAAAACCTTAAAGAATTCCCAAATCTCTCGCTAGCAACAAACCTAGAGACATTGT 1981
||||| ||||||| ||||| |||||| |||||||||||||||||| |||||||| ||||
Sbjct 1913 GATCTCAAAACCTGAAAGAGTTCCCAGATCTCTCGCTAGCAACAAGTCTAGAGACGTTGT 1972
Query 1982 CTCTTGGCTTTTGCTTGAGTTTGGTTGAGGTTCCTTCCACTATTGGGAATCTCAATAAAC 2041
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 CTATTGGCTATTGCTTGAGTTTGGTTGAGGTTCCTTCCACTATTGGGAATCTCAATAAAC 2032
Query 2042 TTACGTATTTGAACATGTCAGGATGCCATAATTTGGAGAAAT-TTCCGGCTGATGTCAAC 2100
|||||||||||||||||| ||| ||||||||||||||| | | |||| |||||| | |||
Sbjct 2033 TTACGTATTTGAACATGTTAGGGTGCCATAATTTGGAG-ACTCTTCCTGCTGATATTAAC 2091
Query 2101 CTCAAATCTCTCTCTGACCTCGTTCTCAATGGATGCTCACGTTTGAAGATTTTTCCCG-C 2159
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 2092 CTCAAATCTCTCTCTCACCTCATTCTCAATGGATGCTCACGTTTGAAGATTTTTCCTGCC 2151
Query 2160 TATATCAAGCAACATCTCAGAGCTATGCCTAAACAGT-TTAGCAGTTGAGGAATTCCCAT 2218
| |||| | |||||||||||||||| |||||| | |||||||||||| |||||||||
Sbjct 2152 T-TATCCACCAACATCTCAGAGCTAACCCTAAA-TCTATTAGCAGTTGAGAAATTCCCAT 2209
Query 2219 CCAACTTGCATCTAGAGAATCTTGTTTATCTTTTAATTTGGGGAATGACGAGTGTCAAGT 2278
| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |
Sbjct 2210 CTAACTTGCATCTAGAGAATCTTGTTTATCTTATAATTCAGGGAATGACGAGTGTGAAAT 2269
Query 2279 TGTGGGATGGCGTGAAGGTGCTTACATCCCTTAAAACTATGCATTTGCGAGATTCTAAAA 2338
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 2270 TGTGGGATGGCGTGAAGGTACTTACATCTCTTAAAACTATGGATTTGCGAGATTCTAAAA 2329
Query 2339 ACCTGAAAGAAATCCCAGATCTTTCAATGGCATCGAATCT-TCTGATACTAAATCTTGA- 2396
|||||||||||||||||||||||||||||||||| ||||| | ||||| | |||||| |
Sbjct 2330 ACCTGAAAGAAATCCCAGATCTTTCAATGGCATCCAATCTGT-TGATATTGAATCTT-AG 2387
Query 2397 ACAATGCATAAGTATT-GTGGAGCTTCCTTCCTCTATTAGAAATCTCCATAACTTGATAG 2455
| |||| ||||| || ||||||||||||||| ||||||| || |||||||| ||| |
Sbjct 2388 AGAATGTTTAAGT-TTGGTGGAGCTTCCTTCCACTATTAGGAACCTCCATAATTTGGCCG 2446
Query 2456 AGTTGGACATGTCAGGATGCACAAACCTGGAGACTTTTCC-AACTGGCATCAACCTTCAA 2514
||||||||||||||||||||||||| |||||||||||||| ||| | | |||||||||||
Sbjct 2447 AGTTGGACATGTCAGGATGCACAAATCTGGAGACTTTTCCAAAC-GACGTCAACCTTCAA 2505
Query 2515 TCTCTAAAACGCATAAATCTAGCTAGATGCTCACGGTTAAAGATTTTTCCGGATATCTCA 2574
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 TCTCTCAAACGCATCAATCTAGCTAGATGCTCACGGTTAAAGATTTTTCCGGATATCTCA 2565
Query 2575 ACCAACATCTCAGAGCTTGATCTAAGCCAAACAGCGATTGAAGAAGTTCCTTTGTGGATC 2634
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2566 ACCAACATCTCAGAGCTTGATCTAAGCCAAACAGCGATTGAAGAAGTTCCTTGGTGGATC 2625
Query 2635 GAGAACTTCTCTAAGCTCAAATACTTAATAATGGGAAAATGTAACATGTTGGAATATGTA 2694
|||||||||||||||||| ||||| || |||||||||||||| ||||||| ||| |||||
Sbjct 2626 GAGAACTTCTCTAAGCTCGAATACCTATTAATGGGAAAATGTGACATGTTAGAACATGTA 2685
Query 2695 TTCCTAAACATTTCCAAACTGAAACATCTCAAGAGCGTTGACTTTTCAGACTGTGGGATA 2754
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| | |
Sbjct 2686 TTCCTAAACATTTCTAAACTAAAACATCTCAAGAGTGTTGACTTTTCAGATTGTGGAAGA 2745
Query 2755 TTGTCTAAAG 2764
||| ||||||
Sbjct 2746 TTGACTAAAG 2755
> Ahg915416 jgi|Araly1|915416|Al_scaffold_0008_167
Length=3342
Score = 562 bits (304), Expect = 7e-159
Identities = 1983/2752 (72%), Gaps = 282/2752 (10%)
Strand=Plus/Plus
Query 46 AGCTTCAGCGGGGAAGATATCCG-TGTAACTTTCCTCACCCACTTTCTCAAGGAGCTTGA 104
|||||||| ||||| ||| |||| |||| |||||| ||||||||| |||||||| ||
Sbjct 34 AGCTTCAGAGGGGACGATCTCCGCCATAAC-TTCCTCGCCCACTTTCGAAAGGAGCTCGA 92
Query 105 TCGAAAAATGATTATTGCTTTCAAAGACAAT-GAGATTGAGAGAGG-GAACTCGATCGGT 162
||| ||| |||| | ||||||| ||| || ||||| |||| ||| ||| ||| ||| |
Sbjct 93 TCGTAAATTGATCAGAACTTTCAATGAC-ATGGAGATCGAGAAAGGTGAA-TCGCTCGAT 150
Query 163 ACCGAGCTTATACAGGCGATAAAGGATTCGAGGATCGCGGTGGTTGTGTTCTCCAAAAAA 222
||| ||||| |||||| || | || ||||| ||||||||||||| | ||||| |||||
Sbjct 151 CCCGTGCTTACACAGGCCATTAGGGGTTCGAAGATCGCGGTGGTTTTATTCTCTAAAAAC 210
Query 223 TACTCTTCTTCGAGTTGGTGTTTGAATGAGTTGGTAGAGATTGTGAATTGCAAG---G-- 277
||| | ||||| || |||||| | |||||| || | ||||||||||| |||||| |
Sbjct 211 TACGCCTCTTCAAGCTGGTGTCTAAATGAGCTGCTGGAGATTGTGAAATGCAAGAAAGAA 270
Query 278 A------AA-TTGTGA-TACCAGTTTTCTATGATTTAGATCCTTCTGATGTTAGGAAACA 329
| || |||||| | ||| ||||| | | | | |||||||| |||| ||| | ||
Sbjct 271 ATTGGCCAACTTGTGATTCCCA-TTTTCCACGGTGTGGATCCTTCCCATGTGAGGCATCA 329
Query 330 AGA-GGGAGAATTTGG-AG-AGTCTTTTAAAGAGACTTGCAAGA-ACAGAACAGATTATG 385
| | || || ||||| || | ||||| ||| ||||||||| || ||| |||| | |
Sbjct 330 A-ATCGGTGACTTTGGAAGTA-TCTTTGAAA-AGACTTGCAGGAGACA-TTCAGAGGAAG 385
Query 386 AGATACAA-C-GTTGG-GGCCAAGCGTTGACC-AATGTAGCAAATATTGCT-GGATATCA 440
|| | || | | ||| | ||||||||||| || |||||||||| || | ||| | ||
Sbjct 386 TGA-AAAATCAG-TGGAAG-AAAGCGTTGACCGAA-GTAGCAAATA-TGGTCGGA-A-CA 438
Query 441 CA-CTAGGAAA-CCGAATAACGAAGCAAAATTGATTGAAGAAATCACT-AATGATGTTTT 497
|| || ||| | |||| |||||||| ||||||| | ||| | |||||| ||||
Sbjct 439 CATCTTCAAAATTGGGATAATGAAGCAAAGCAGATTGAATATATC-GTCAATGATCTTTT 497
Query 498 GGATAAACTAATGAAGT-TAACACCATCGAAA-GATTTTGATGAAT-TTTTTGGCATCGA 554
|| | || | || | | |||| ||||| ||| |||||||| | || | |||| || ||
Sbjct 498 GGGT--AC-AGTG-ATTCTAACTCCATC-AAAGGATTTTGA-GGATACTGTTGGGATTGA 551
Query 555 AGATCATAT--CAAAGAGCTGAGTTT-A--TT--A-TTGTGCTTGGAATCTGAGGAAGTG 606
||||||||| |||||| | ||||| | || | ||| || |||||| ||||||||
Sbjct 552 AGATCATATAGCAAAGA--TAAGTTTAATTTTGGACTTGAAATTTGAATCTAAGGAAGTG 609
Query 607 AGAATGGTTGGGATATGGGGT-CCTACGGGGATTGGTAAGACAACCATTGCAAGAGCTTT 665
|||| |||||||||||||||| ||| | || ||||| || ||||||||||||||||||||
Sbjct 610 AGAAGGGTTGGGATATGGGGTCCCT-CAGGAATTGGCAAAACAACCATTGCAAGAGCTTT 668
Query 666 ATTTAATCGAATC-TAC-CGTCACTTCCAAGGTAGGGTTTT-TATAGACAGAGC-TTTTA 721
|| || || || | | | | | ||| | | | | ||||| | |||||| | | |||
Sbjct 669 ATATAGTC-AA-CATTCTCATGTTTTCGATGTTTGTGTTTTCT-TAGACATA-CATTTCG 724
Query 722 TATCTAAGAGTA-TGGCTATTTATAGTAGA-GCAAACTCGGACGACTATAACTTGAAGTT 779
|||||||||||| | | |||||| | | |||| | | || ||||||||| |||||||
Sbjct 725 TATCTAAGAGTACT-AAAAATTATAGAAAAGGCAATC-CAGATGACTATAACATGAAGTT 782
Query 780 GCATTTGCAAGAAAAG-TT-GTTGTCTAAACTTTTAGACaaaaaaaaCTTGGAGATA-AA 836
|| ||||||| ||||| || || |||||| | |||||| |||| || | ||| || ||
Sbjct 783 GCGTTTGCAA-AAAAGTTTCCTT-TCTAAAATATTAGACCAAAAGGACATAGAGGTAGAA 840
Query 837 TCACCTAGATGCT-GTGA-AAGAGAGGCTAAGGCA-AATGAAAGTTCTTATCTTTATTGA 893
|| ||| || | | | |||||||||||| ||| | ||||||||||||| || ||||
Sbjct 841 -CATTTAGGTG-TAAT-AGAAGAGAGGCTAAAGCACCA-GAAAGTTCTTATCGTTCTTGA 896
Query 894 TGATTTGGATGATCAAGTGGTGCTAGA-AGCCTTAGCCTGTCAA-ACTCAGTGGTTTGGG 951
|||||||||||||||| ||||| |||| | |||| | || || | | | ||||||||
Sbjct 897 TGATTTGGATGATCAAATGGTGTTAGATA-CCTTGGTAGGTAAAGA-TGAATGGTTTGGA 954
Query 952 CATGGAAGTAGAATCATTGTGATTACAAAAGATAAGCATCT-CTT-AAGGGCTTATGGGA 1009
||| || |||||||||||||||||||||||||||| ||| || ||| | ||||||
Sbjct 955 TGTGGGAGCAGAATCATTGTGATTACAAAAGATAAGCGTCTTCTAGAAGCCC--ATGGGA 1012
Query 1010 TTGATCATATATATGAGGTTC-TTCTCCCGTC-GAAAGACCTTGCTATTAAGATGTTTTG 1067
| ||||||||||||||||| || |||| || |||| | | ||| || ||||||| ||
Sbjct 1013 TAAATCATATATATGAGGTTGGTT-TCCCATCTGAAA-AGCAAGCTCTTGAGATGTTCTG 1070
Query 1068 TCGA-TCTGCTTTTAGG-A-AAGACTCTCCACCCAATGGTTTTATAGAACTTGCTTATG- 1123
|| | || |||||| || | || | ||||| |||||||| | || || ||| | |
Sbjct 1071 TC-ACTCAGCTTTTGGGCAGAA-A-TCTCCGGATGATGGTTTTGTGGAGCTCGCT-ACGG 1126
Query 1124 ATGTTGTAAAACGTGCAGGTAGTCTTCCTTTGGGTCTTAACATTTTAGGTTC-GT-ATTT 1181
| |||| | |||||| ||| |||||||||| |||||||| ||| ||||| || ||
Sbjct 1127 AAGTTGCAGCACGTGCTGGTGGTCTTCCTTTAGGTCTTAAGATTCTAGGTAAAGTTATGA 1186
Query 1182 ACGG--GGTAGGAGTAAGGAGGATTGGATAGATATGA-T-GCCGGGGCTTCGTAATAAA- 1236
| || ||| || | |||| |||| || ||| | || | | |||| || |||
Sbjct 1187 AAAATCGGAAGG--TA-G-AGGAATGGA-AGGG-TGAATTGCTGAGTCTTCAAAA-AAAT 1239
Query 1237 CTAGAC-GGGAAAATTCAGAAAA-CACTTAGAGTCAGCTACGACGGGTTGGCTAGCGAAG 1294
| ||| ||| | ||| ||||| |||||| |||||||||||| | | | || | ||
Sbjct 1240 C-AGAATGGGGATATTG-GAAAAACACTTAAAGTCAGCTACGATAAGATAGATATCCAAA 1297
Query 1295 A-CGATCA-AGCGATATTTCGTCATATTGCATGTATTTTT-AATTTTGAGGCA-T-GCAG 1349
| | || | ||||||||||||||| || || ||| ||||| ||| | || | | | |
Sbjct 1298 AAC-AT-AGAGCGATATTTCGTCACATCGCTTGT-TTTTTCAATGGGGCGGAAATCG-A- 1352
Query 1350 TGACATCAAGAA--ACTGCTTGAAGATAGT-GGCTTGAATGTCACTAATGG-GCTTATAA 1405
| ||||||| | | |||| ||| || || | | || || | || | ||| |
Sbjct 1353 TAACATCAA-ATTGA-TGCTCCCAGA--GTTGGAT-GT-TGAAAC-A--GGTG-TTAGAC 1402
Query 1406 ACCTTGTCGATAAGTCCCTCATACGTAT-AGAACCAAAGCAGAA-AA--C-TGTG--G-A 1457
|||| || || |||||||||||| ||| | || || | ||| || | ||| | |
Sbjct 1403 ACCTAGTTGAGAAGTCCCTCATAAGTAGCA-AATCATCGTGGAACAATACGTGTACCGTA 1461
Query 1458 GAT--GCATTGTTTGTTACAAGAAACGGCTAGAGAAA-TTATTCGTGCACAGTCTTTTGA 1514
||| ||| |||||| ||||||||| || | || || || | ||||||||||| ||
Sbjct 1462 GATATGCACTGTTTGGTACAAGAAATGGGAA-AGCAACTTGTCCGTGCACAGTCC---GA 1517
Query 1515 TGATCCTGGAAAACGAGAATTCCT-TGTGGATGG-GAAGGATAT-TGCTGATGTCCTAGA 1571
|| |||||| ||||||||||||| | || || || | || | ||| |||| || |
Sbjct 1518 AGAGCCTGGAGAACGAGAATTCCTATTTG-ATTCAGATG-ATGTCTGCA-ATGTACTTGG 1574
Query 1572 TAATTGC-AGTGGTAC-AAGAAAAGTCT-TAGGTATATCATTGGATATGGATGAGATTGA 1628
| | | | |||||| || ||| || | ||||||||||||||||| | ||||||||||
Sbjct 1575 -AGGTACCAATGGTACTAATAAA-GT-TATAGGTATATCATTGGATTTAAATGAGATTGA 1631
Query 1629 AGAGTTGCATCTACA-A-GTAGACGCCTTCAAAAAGATGCTTAATCTCCGTTTTCTAAAA 1686
|||||| | |||| | | | | || |||||||| |||| ||||||||||||||||
Sbjct 1632 TGAGTTGGAGATACACAAGAA-A-GCGTTCAAAAATATGCACAATCTCCGTTTTCTAAGG 1689
Query 1687 CTTT-ACACAAATACAAATATATCAGAAAAAG-AAGACAAATTGC-TCTTACCTAAAGAA 1743
|| | | |||| || | | | ||||| ||| ||| | | ||||| ||| ||
Sbjct 1690 -TTCCATATAAATTCATGGG-AGCGGGAAAAGGAAGTTGAATGGAAT-TTACCCAAAAAA 1746
Query 1744 -TTCAA-CTATTTAC-CCAATACACTCA-GATTACTAAGTTGGCAAAGGTT-TCCAATGA 1798
|| | || ||| | || | | ||||| | ||||||| ||||| || | ||| ||||
Sbjct 1747 ATTGATGCT-TTTCCTCCTA-A-ACTCAAG-TTACTAAATTGGCCG-GGATATCCGATGA 1801
Query 1799 GATGTAT-GCCTTCTGAtttttttCCTAAATAT-CTTGTTAAACTTCTA--ATGCCGGGG 1854
| || |||| |||| ||| |||| | || || ||| |||| | | |||||
Sbjct 1802 AACA-ATTGCCTGCTGAATTTCGTCCTGA-TAAGCTGGTTGAACT-C-AGGATGCCCAAT 1857
Query 1855 AGCAAGCT-C--GAGAAGCTGTGGGACGGAG-TAATGCCGCTTCAATGCCTCAAGAATAT 1910
|||||| | | ||||| || ||||| |||| ||| | | ||| ||| ||||||| ||||
Sbjct 1858 AGCAAGATACTTGAGAAACTATGGGAAGGAGATAA-GTCACTTAAATTCCTCAAGGATAT 1916
Query 1911 GAATTTGTTTGGATCTGA-AAACCTTAAAGAATTCCCAAATCTCTCGCTAG-CAACAAAC 1968
| |||||| ||||| | |||||| |||||| ||||| |||| || || | || ||
Sbjct 1917 GGATTTGTCGGGATC-GCTAAACCTGAAAGAAATCCCAGATCTTTCAA-AGGCGACCAAT 1974
Query 1969 CTAGAGACATTGTCTCTTGGCTTTTGCTTGA-GTTTGGTTGAGGTTCCTTCCACTATTGG 2027
|| ||||| || |||| | ||| || | | ||||| ||| |||||||| |||||
Sbjct 1975 CTTGAGACGCTGAATCTTAACGGTTG-TTCAAGCTTGGTGGAGCTTCCTTCCTCTATTCT 2033
Query 2028 GAATCTCAATAAACTTACGTATTTGAACATGTCAGGATGC-CATAATTTGGAGAAAT-TT 2085
||||||||||||||| ||| ||||||||||| | |||||| || ||| ||||| | ||
Sbjct 2034 GAATCTCAATAAACTGACGGATTTGAACATGGCTGGATGCACA-AATCTGGAGGC-TCTT 2091
Query 2086 CCGGCTGATGTCAACCTCAAATCTCTC-TCTGACCTCGTTCTCAATGGATGCTCACGTTT 2144
|| ||| | ||| || ||||||| || ||||| ||| |||||||||||| ||
Sbjct 2092 CCAACTG--G-CAAACTGGAATCTCTTATCC-ACCTCAATCTTGCTGGATGCTCACGGTT 2147
Query 2145 GAAGATTTTTCCC-GCTATATC-AAGCAACATCTCAGAGCT-ATGCCTAAACA-GTTTAG 2200
||||||||| ||| | ||| || || ||| ||||||||||| || |||||| | | |
Sbjct 2148 GAAGATTTT-CCCTGATATCTCTAA-CAAAATCTCAGAGCTTATTA-TAAACAAGACT-G 2203
Query 2201 CAGTT-GAGGA-ATTCCCATC-CAACTTGCATCTAGAGAATCTTGTTTATCTTTTAATTT 2257
| || || | |||||| || ||||| || |||||||||||| ||| | ||| | |
Sbjct 2204 CC-TTCGAA-ATATTCCCTTCTCAACT-GCGTCTAGAGAATCTAGTTGAACTT--AGCCT 2258
Query 2258 GGGGAATGACGA-GTGTCA-AG-TTGTGGGATGGCGTGAAGG-TGCTTACATCCCTTAAA 2313
|| | || || | | || | || |||||||| || || || | |||||| || |||
Sbjct 2259 GGAGCAT-ACAATGAGTGAGAGGTTGTGGGAAGGAGTTCAGCCT-CTTACAAATCTGAAA 2316
Query 2314 ACTATGCATTTGC-GAGATTCTAAAAACCTGAAAGAAATCCC-AGATCTTTCAATGGCAT 2371
|| || | ||| | ||| || |||||||||||||| |||| | ||||||||||||||
Sbjct 2317 ACAATAAAGTTGTTGGGAT-CTGAAAACCTGAAAGAACTCCCCA-ATCTTTCAATGGCAA 2374
Query 2372 CGAA-TCTTCTGATACTAAATCTTGAACAAT-GCATA-AGTATTG-TGGAGCTT-C-CTT 2425
| || |||| || ||| || || || ||| || | ||| ||| ||||||| | |||
Sbjct 2375 C-AAGTCTTGAGACACTTAACCTC-AATAATTGC-TCGAGT-TTGGTGGAGCTAACTCTT 2430
Query 2426 -CCTCTATT-AGAAATCTCCATAA-CTTGATAGAG-TTGGACATG-TCAGGATGCACAAA 2480
|| ||||| |||| ||| |||| || | | ||||| ||| | ||||||| |||
Sbjct 2431 TCCACTATTCAGAA-TCTTAATAAACTA-AC-GTCCTTGGATATGAT-AGGATGCTCAAG 2486
Query 2481 CCTGGAGACTTTTCCAACT-GGCATCAACCTTCAATCTCTAAAACGCATAAATCT-AGCT 2538
|| |||||| |||||| | ||||||||||| ||||||| | ||| | ||||| | |
Sbjct 2487 TCTAGAGACTCTTCCAA-TAGGCATCAACCTGAAATCTCTGTATCGCCTCAATCTCAA-T 2544
Query 2539 AGATGCTCACGGTTAAAGATTTTTCCG-GATATCTCAACCAACATCTCAGAG-CT-TGAT 2595
||||||| | ||| | || ||||| |||||||||| ||||||| | | || | |
Sbjct 2545 GGATGCTCGCAGTTGA-GAGGTTTCCCAGATATCTCAAACAACATCAC-GTTTCTCTTTT 2602
Query 2596 CTAAGCCAAACAGCGATTGAAGAAGTTCCTTTGTGGATCGAGAACTTCTCTA 2647
||| ||| |||||||| |||||||| |||| | ||| | ||||||||||
Sbjct 2603 -TAAACCAGACAGCGATCGAAGAAGTCCCTTCGCATATCAATAACTTCTCTA 2653
Score = 176 bits (95), Expect = 1e-42
Identities = 210/263 (80%), Gaps = 17/263 (6%)
Strand=Plus/Plus
Query 2337 AAACCTGAAAGAAATCCCAGATCTTTCAATGGC-ATCGAATCTTCTGATACTAAATCTTG 2395
||||||||||||||||||||||||||||| ||| | | |||||| || || ||||||
Sbjct 1935 AAACCTGAAAGAAATCCCAGATCTTTCAAAGGCGACC-AATCTTGAGACGCTGAATCTT- 1992
Query 2396 AACAAT-GCAT-AAGTATTG-TGGAGCTTCCTTCCTCTATTA-GAAATCTCCATAA-CTT 2450
||| | | | ||| ||| |||||||||||||||||||| ||| |||| |||| ||
Sbjct 1993 AACGGTTGT-TCAAGC-TTGGTGGAGCTTCCTTCCTCTATTCTGAA-TCTCAATAAACT- 2048
Query 2451 GATAGAGTTGGACATGTCAGGATGCACAAACCTGGAGACTTTTCCAACTGGCATCAACCT 2510
|| || ||| ||||| | ||||||||||| |||||| || |||||||||||| ||| |
Sbjct 2049 GACGGATTTGAACATGGCTGGATGCACAAATCTGGAGGCTCTTCCAACTGGCA--AAC-T 2105
Query 2511 TCAATCTCTAAAACGCATAAATCTAGCTAGATGCTCACGGTTAAAGATTTTTCCGGATAT 2570
||||||| | | | | ||||| ||| ||||||||||||| |||||||| || |||||
Sbjct 2106 GGAATCTCTTATCCACCTCAATCTTGCTGGATGCTCACGGTTGAAGATTTTCCCTGATAT 2165
Query 2571 CTC-AACCAACATCTCAGAGCTT 2592
||| ||| || ||||||||||||
Sbjct 2166 CTCTAACAAA-ATCTCAGAGCTT 2187
> Ahg906176 jgi|Araly1|906176|Al_scaffold_0003_3304
Length=1794
Score = 276 bits (149), Expect = 1e-72
Identities = 345/435 (79%), Gaps = 32/435 (7%)
Strand=Plus/Plus
Query 601 GAAGTGA-GAATGGTTGGGATATGGGGT-CCTACGGGGATTGGTAAGACAACCATTGCAA 658
||||||| ||| |||||||||||||||| ||| |||| ||||| ||||| ||||||||||
Sbjct 439 GAAGTGAGGAA-GGTTGGGATATGGGGTCCCT-CGGGAATTGGCAAGACTACCATTGCAA 496
Query 659 GAGCTTTATTTAATCGAATCTAC-CGTCACTTCCAAGGTAGGGTTTTTATAGACAGAGC- 716
||||| |||||| ||| ||| | | ||||||||||||||||||||| ||||||| ||
Sbjct 497 GAGCTCTATTTAGTCGTCTCT-CTCATCACTTCCAAGGTAGGGTTTTCATAGACA-TGCG 554
Query 717 TTTTATATCTAAGAGTATGGC-TA-TTTATAGTAGA-GCAAACTCGGAC-GACTATAACT 772
||| ||||||||||| || | | |||||| | | || ||| | ||| |||||||||
Sbjct 555 TTTCATATCTAAGAG--TGTCAAAGATTATAGCAAAGGC-AAC-CCGACTGACTATAACA 610
Query 773 TGAAGTTGCATTTGC-AAGAAAAGTTGT-TGTCTAAACTTTTAGACaaaaaaaaCT-TGG 829
|||||||||| |||| ||||||| || | | |||||| | |||||| ||| | | |
Sbjct 611 TGAAGTTGCACTTGCAAAGAAAA-TT-TCTCTCTAAAATATTAGAC-AAAGAGGGTATAA 667
Query 830 AGATAAATCACCTAGATGCTGTGAAAGAGAGGCTAAGGCA-AATGAAAGTTCTTATCTTT 888
|| || ||||| ||| ||| ||||||| || ||| || || |||||||||||| ||
Sbjct 668 AGTTAGATCACTTAGGTGCAGTGAAAGGGAAATTAAAACACCAT-AAAGTTCTTATCATT 726
Query 889 ATTGATGATTTGGATGATCAAGTGGTGCTAGAAGCCTTAGCCTGTCAA-ACTCAGTGGTT 947
||||||||||||||||||||||||||| |||| ||||| || || | | | | |||||
Sbjct 727 ATTGATGATTTGGATGATCAAGTGGTGTTAGATGCCTTGGCGGGTGGAGA-TGAATGGTT 785
Query 948 TGGG-CATGGAAGTAGAATCATTGTGATTACAAAAGATAAGCATCT-CTTAAGGGCTTAT 1005
||| | ||| || |||||||| | ||||||||||||||||||| | || |||||| ||
Sbjct 786 TGGTTC-TGGCAGCAGAATCATCGCGATTACAAAAGATAAGCATATTCT-AAGGGCCCAT 843
Query 1006 GGGATTGATCATATA 1020
|||||| | ||||||
Sbjct 844 GGGATT-A-CATATA 856
> Ahg494325 jgi|Araly1|494325|fgenesh2_kg.8__141__AT5G46470.1
Length=3735
Score = 141 bits (76), Expect = 4e-32
Identities = 241/314 (77%), Gaps = 38/314 (12%)
Strand=Plus/Plus
Query 2316 TATGCATTTGC-GAGATTCTAAAAACCTGAAAGAAATCCCAGATCTTTCAATGGC-ATCG 2373
|||| |||| | | || |||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1914 TATGGATTTACGGGGA-TCTAAAAACCTGAAAGAAATCCCAGATCTTTCGATGGCCA-CT 1971
Query 2374 AATCTTCT-GATACT-AAATCTTGAACAAT-GCATA-AGTATTG-TGGAGCTTCCTTCCT 2428
||||| | || ||| ||| || | || | || | ||| ||| |||| |||||||| |
Sbjct 1972 AATCT-CGAGACACTTAAA-CTC-AGCAGTTGC-TCGAGT-TTGGTGGAACTTCCTTCGT 2026
Query 2429 CTATT-AGAAATCTCCATAA-CTTGA-TAGAGTTGGACATGTCAGGA-TGC-A-CAAACC 2482
||||| || | || |||| || || | || |||||||||||| | ||| | ||
Sbjct 2027 CTATTCAGTAC-CTGAATAAGCT-GAAT-GATTTGGACATGTCAT-ACTGCGATCATT-- 2080
Query 2483 TGGAGACTTTTCCAACTGGCA-TCAACCTTCAA-TCTCTAAAACG-CATAAATCT-AGCT 2538
|||||||| |||| ||||| | | ||||| ||| ||||| | || | | ||||| || |
Sbjct 2081 TGGAGACTATTCCCACTGG-AGTTAACCT-CAAATCTCTCTATCGTC-TCAATCTCAG-T 2136
Query 2539 AGATGCTCACGGTT-AAAGATTTTTCCGGATATCTCAACCAACATCTCA-GAGCTTGATC 2596
||||||||||||| ||| | ||||| ||||| ||||||||||||||| | |||||||
Sbjct 2137 GGATGCTCACGGTTGAAA-AGTTTTCTTGATATATCAACCAACATCTCATG-GCTTGATA 2194
Query 2597 TAAGCCAAACAGCG 2610
|| |||||||||||
Sbjct 2195 TAGGCCAAACAGCG 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139975753494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5