BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08455.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489752 jgi|Araly1|489752|fgenesh2_kg.6__2886__AT4G08455.1 1210 0.0
> Ahg489752 jgi|Araly1|489752|fgenesh2_kg.6__2886__AT4G08455.1
Length=862
Score = 1210 bits (655), Expect = 0.0
Identities = 803/873 (92%), Gaps = 15/873 (2%)
Strand=Plus/Plus
Query 1 CCGATACCGACACGCCGATGCGATGCATCTCTTGTCGAGAAGAGTACCTCCCTCGCAACG 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 CCGATACCGACACGGCGATGCGATGCATCTCTTGTCGGGAAGAGTACCTCCCTCGCAACG 60
Query 61 CCGGGACCTGCAAGGAATGCTACGTCGAAGCCGGCGAAACTGAAGAAGAACTCAAACGCG 120
| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CTGGAACCTGCAAAGAGTGCTACGTCGAAGCCGGCGAAACTGAGGAAGAACTCAAACGCG 120
Query 121 AGATCGATGACCTCAAAGCTAAAGTTGCTTTCCTTCGCTTATCTTCTTCTCTTGATCATG 180
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AGATCGACGACCTCAAAGCTAAAGTTGCTTTCCTTCGCTTATCTTCTTCTCTCGATCATG 180
Query 181 GAACTAGTTCAACCTCTAGATCCTTCACTGATGTTGTTCTCATCGCCTCTGAAGA-TAAC 239
|||| || |||| ||||||||||||||||||||||||||||||||| ||| |||| | |
Sbjct 181 GAACCAGCTCAAGCTCTAGATCCTTCACTGATGTTGTTCTCATCGCTTCTCAAGACT-CC 239
Query 240 GCCGGATCTCCTCCTATTCCCGCTCATAAATCCGTTCTGGTGAGTCGTTCTCCAGTTTTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GCCGGATCTCCTCCTATTCCCGCTCATAAATCCGTTCTGGTGAGTCGTTCACCAGTTTTC 299
Query 300 AAAGCAATGCTTGAGAATGAAATGGAAGAGAGTCTAAGCGGCACGATCAAGATCAGCGAC 359
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 300 AAAGCAATGCTTGAGAATGAGATGGAAGAGAGTCTTAGCGGCACTATCAAGATCAGCGAC 359
Query 360 GTATCTTATGACGCTCTTCGGACTTTCGTATATTATCTCTATACAGCTGAAGCATGTCTT 419
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 360 GTATCTTATGATGCTCTTCGGACTTTCGTATATTATCTTTACACAGCTGAAGCATGTCTT 419
Query 420 GATGAGCAAATGGCATGTGATCTTTTGGTCATGTCAGAGAAATACCAAGTGAAACATCTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGAGCAAATGGCATGTGATCTTTTGGTCATGTCAGAGAAATACCAAGTGAAACATCTC 479
Query 480 AAGAGTTATTGTGAGAGGTTTTTGGTTACCAAACTCAGTCCGGATAACTCTCTCATGACC 539
|||||||| ||||||||||||||||| ||||||||||||||||| || || || ||||||
Sbjct 480 AAGAGTTACTGTGAGAGGTTTTTGGTAACCAAACTCAGTCCGGACAATTCGCTTATGACC 539
Query 540 TATGCCTTTGCACACCAGCACAACGCGAAACATGTTCTCGATGCTGCGTTGTCGCAGATC 599
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 540 TATGCCTTTGCCCACCAGCACAACGCAAAACATGTTCTCGATGCTGCTTTGTCGCAGATT 599
Query 600 GTAGAAAATATGGATAAACTTACTAAAAGAGAGGAATATATGGAGCTCGTGGAGAAGGAT 659
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 GTAGAAAATATGGAAAAACTTACTAAAAGAGAGGAATACATGGAGCTCGTGGAAAAGGAT 659
Query 660 CCTCGTCTTATCGTTGAAATTTATGAAGCCTATCTCTCGAAACAGGTTAATACGGCAGCT 719
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 660 CCTCGTCTTATTGTTGAAATCTATGAAGCCTATCTCTCGAAACAGGTTAACACAGCAGCT 719
Query 720 GGAGGAACTAGTACGAGCAAAACTAGTTGAAATT-TTCTTTATTGTCGACCTAAACAAGA 778
||||||||||| || ||||||||| ||||||||| || || || | | |||||||||
Sbjct 720 GGAGGAACTAGCACAAGCAAAACTGGTTGAAATTATTGTTG-TTCTAAAG-TAAACAAGA 777
Query 779 G-TAGATTCTGGTTTACCTTCATTTCGT-TTTTAGGTATAGTATGGTTAGGGTCACCAAA 836
| || ||||| |||| ||||| |||| | |||||||||||||||||||||| ||| || |
Sbjct 778 GGTAAATTCTTGTTTCCCTTCCTTTC-TCTTTTAGGTATAGTATGGTTAGGCTCAGCAGA 836
Query 837 ACATGGGGTTTGTGTTTGTGAAGCACTAGAAAT 869
|||||| ||| ||| | |||||||||||||
Sbjct 837 ACATGG--TTT-TGT--G--AAGCACTAGAAAT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5