BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08460.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489753 jgi|Araly1|489753|fgenesh2_kg.6__2887__AT4G08460.1 1831 0.0
> Ahg489753 jgi|Araly1|489753|fgenesh2_kg.6__2887__AT4G08460.1
Length=1290
Score = 1831 bits (991), Expect = 0.0
Identities = 1203/1301 (92%), Gaps = 32/1301 (2%)
Strand=Plus/Plus
Query 3 TATCGCCGCCGCTGAGACCGCCACTTAAGG-CCGTCTCCTCCGCAATCTCCGTAACCAAA 61
|||||||||||||||||||||| ||||||| ||||||||| | | | ||| ||||||||
Sbjct 1 TATCGCCGCCGCTGAGACCGCCGCTTAAGGCCCGTCTCCT-C-C-A--TCCATAACCAAA 55
Query 62 ACCACCGGCATCGCCTGGAAAATCCTGTAGAGTTTGAGCCAATGTTGTCGGTGTGAACCT 121
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 56 ACCACCCTCATCGCCTGGAAAATCCTGTAGAGTTTGAGCCAATGTTGTCGGCGTGAACCT 115
Query 122 CAAAAGTTGTGGGTGTTTTTCCCGCCGATAAAGCTGCTGGCAAGATGGGTTGGGGTTGGG 181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CAAAAGTTGTGGGTG-TTTTCCCGCCGATAAAGCTGCTGGCAAGATGGGTTGGGGTTGGG 174
Query 182 TAGAATGGTGTGTAGGGCAAGATGGGGAGAACTAAGGAGCAGGCAACATTAACTCGGTAT 241
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 175 TAGGATGGTGTGTAGGGCAAGATGGGGAGAACTAAGGAGCAAGCAACGTTAACTCGGTAT 234
Query 242 CCACCCTGTCCTAGGAATCCTGCTAAATTCAATGATATAAACAAAGCACTCCAGGAAAAA 301
|||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||
Sbjct 235 CCACCCTGTCCTAGGAATCCTGATAAACTCAAAGATATAAACAAAGCACTCCAGGGAAAG 294
Query 302 GGATATGGTAAGGCTCTGAAAAGAAAACCTTGGACGGGTGTGACATGCCCTGTCTGTCTT 361
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 295 GGATATGGTAAGGCTCTGAAAAGAAAACCTTGGAAGGGTGTGACATGCCCTGTCTGTCTT 354
Query 362 GAGGTTCCTCACAACTCGGTCGTCCTCCTTTGTTCATCTTACCACAAAGGATGCCGTCCG 421
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 355 GAGGTTCCTCACAACTCGGTCGTCCTCCTTTGCTCATCTTATCACAAAGGATGCCGTCCT 414
Query 422 TACATGTGTGCCACGGGAAACCGTTTCTCAAATTGTCTAGAGCAGTACAAAAAGGCATAT 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 TACATGTGTGCCACGGGAAACCGTTTCTCAAATTGTCTAGAGCAGTACAAAAAGGCCTAC 474
Query 482 GCCAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAG 541
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCAAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAG 534
Query 542 GTGAAAGGCTGGACCGTTGTGGAAAAGGAACGTAAGTATCTGAATTCTAAGAAAAGGTCA 601
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 535 GTGAAAGGTTGGACTGTTGTTGAAAAGGAACGGAAGTATCTGAATTCTAAGAAAAGGTCA 594
Query 602 TGCATGAACGACGAGTGTTTGTTTTATGGAAGCTATAGACAGCTCAAGAAGCATGTTAAG 661
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGTATGAAAGATAAGTGTTTGTTTTATGGAAGCTATAGACAGCTCAAGAAGCATGTTAAG 654
Query 662 GAGAACCATCCGAGAGCCAAGCCAAGAGCCATAGACCCTGTGCTGGAGGCGAAATGGAAG 721
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGGTTCATCCGAGAGCCAAACCAAGAGCCATAGACCCTGTGCTGGAGGCGAAATGGAAG 714
Query 722 AAGCTTGAGGTTGAGAGGGAGAGGAGTGATGTAATCAGCACAGTCATGTCGTCAACACCT 781
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 AAGCTCGAGGTTGAGAGGGAGAGGAGTGATGTAATCAGCACAGTCATGGCGTCAACACCC 774
Query 782 GGGGCTATGGTATTTGGAGACTATGTGATTGAGCCATACAATG--G-TTATGATCATCAA 838
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 775 GGGGCTATGGTATTTGGAGACTATGTGATTGAGCCATACAATAATGCTTATGGTCATCAA 834
Query 839 GATGACAGTGACGAT--T-ACAGTGATTCGTCGGATGACGAAATGGAAGGTGGGGTATTC 895
||||||||||| || | ||||||| ||||||||| ||||||||||||||| |||||
Sbjct 835 GATGACAGTGATGAAGATGACAGTGA---GTCGGATGATGAAATGGAAGGTGGGTTATTC 891
Query 896 GAGCTTGGAGCATTCGACCTGGGCCGTCTTCAACCGCGTTCGGCTGCCATCTCAAGCCGG 955
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAGCTTGGATCATTCGACATGGGCCGTCTTCAACCGCGTTCGGCTGCCATCTCAAGCCGG 951
Query 956 GGAATTCGCGGTATGATCATAAGGAACCGGTGGGCTCGAAGCAGAGGTGCGAGCAGAAGG 1015
||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 952 GGAATTCGCAGTATGATCATAAGGAACCGGTGGGTTCGGAGCAGAGGTGTGAGCAGAAGG 1011
Query 1016 CGACAAACATAAGATTGATGATTG--GA----A-GCTTGGAAGGCAGATGATTCTACACC 1068
|| |||||| |||||||||||||| || | |||||||| || ||||||||||||||
Sbjct 1012 CGGCAAACACAAGATTGATGATTGATGATTGGAAGCTTGGAAAGCGGATGATTCTACACC 1071
Query 1069 GTCTGACCAAGTTAACCTCCGAACTCTATATA-TCGGCAGAGGGGAAGGCGAGTGGGAAC 1127
|||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||
Sbjct 1072 GTCTGACCAAGTTAACCTCCGAGCTCTATATAGT-GGCGGAGGGGAAGGCGAGTGGGAAC 1130
Query 1128 AAAACAGAGGGTTGTTGATTAAAGTTTTTAGTTAGCGGTTTAGGTTTTCAGGTTTGGAAG 1187
|||||| ||| |||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1131 AAAACAAAGGATTGTTGATTAAAGTTTTTAGTTAGCGATTTAGGGTTTCAGGTTCGGAAG 1190
Query 1188 ATTTGAGCTGTTTGTTCCTCTCTACCTTTGATTTAAAGTGTTAAAACGTTTCATTTGCT- 1246
||||||| || |||||| ||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct 1191 ATTTGAGTTGGGTGTTCC-CTCGACCTTTGATTTAAAGAGTTCAAACGTTTCATATGCTT 1249
Query 1247 ---A--CTTTTATTTGATTTGAAAATATCTCCATTGGCTTC 1282
| ||||||||| |||||||||||||||||||||||||
Sbjct 1250 TGGATACTTTTATTTCATTTGAAAATATCTCCATTGGCTTC 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5