BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08510.1
Length=2820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1 3681 0.0
Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751 649 0.0
> Ahg489756 jgi|Araly1|489756|fgenesh2_kg.6__2890__AT4G08510.1
Length=2766
Score = 3681 bits (1993), Expect = 0.0
Identities = 2584/2849 (91%), Gaps = 122/2849 (4%)
Strand=Plus/Plus
Query 1 CCTTGAACAAGTTTTCTC---CAAACAAACCaaaaaaaaaaaaaCATTTCGCCTCC-T-T 55
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
Sbjct 1 CCTTGAACAAGTTTTCTCAAAGAAACAAAAAAAAAAAAAAAAAACATTTCGCCTCCTTCT 60
Query 56 C-TCTTCTTCTTCGCTACCAGTCTCTTCTCTCTCGCACCATCGCAAAAACCCTAATTTTT 114
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTTCTTCTTCTTCTCTACCAGTCTCTTCTCTCTCGCACCATCGCAAAAACCCTAA--TTT 118
Query 115 CTCTTCGATTTTCTCTTCTCACAAACCCTAATTGTTTCTTCCTCCCACCACTCGCTTTCT 174
|||||||||||||||||||||||||||||||||| || | |||||||||||||| |
Sbjct 119 CTCTTCGATTTTCTCTTCTCACAAACCCTAATTG----TT--T-CCACCACTCGCTTTTT 171
Query 175 CCTTCCATCGTTTGGtttttttAATAAGTTTCTCTCTTTTTTCTTGTTTGGGGAAGAAGC 234
||||||||||||||| ||| || |||| || |||| || |||||||||||||||||
Sbjct 172 CCTTCCATCGTTTGGGTTTGTT--TAAG-TT-TCTC----TT-TTGTTTGGGGAAGAAGC 222
Query 235 CATTGGTTTCTTTAAACGATTGAATCTATAAAActtcttctttttcttctgggttctgtg 294
||||| ||||||| | ||||||||||||||||| | |||||| | | ||
Sbjct 223 CATTGTTTTCTTTGAGCGATTGAATCTATAAAA------C---TTCTTC-----T-T-TG 266
Query 295 ttcttcgtctctttcGTTGAACCCGTTGTTTCGATTTTCTTTCTTCTGAGGGAGAttttt 354
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||
Sbjct 267 TTCTTCGTCTCTTTCGTTGAACCCGTTGTTTCGATTTTCTTTGTTCTG-GGGA-A-ATTT 323
Query 355 tttCTGTTGATGCGTTGATACGAATTTTGCCGTTGTTTTGTTGAATTCTAGGAATAGTGA 414
|||||| ||||||||||| ||||||| |||||||||| |||||||||||||| ||||||
Sbjct 324 TTTCTGGTGATGCGTTGAAACGAATTCTGCCGTTGTTGTGTTGAATTCTAGGGCTAGTGA 383
Query 415 TTAGGTGGTTAGGGTTTCTGGTTTAGTG-C--C-C-----A-TCAGGCTAGTTCCCTTAT 464
||||||| |||||||||| || |||||| | | | | ||||||| ||||| ||||
Sbjct 384 TTAGGTGATTAGGGTTTC-GGGTTAGTGACATCACTGTGAATTCAGGCTGGTTCCTTTAT 442
Query 465 TGGTGGATTT--A-GATGATG---ATGATGATCTTCTAGGTTGGTTTTAGA--GTGTGTC 516
|||||| ||| | ||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 443 TGGTGGGTTTGGATGATGATGATTATGATGATCTTCTAGGTTGGTCTTAGAGTGTGTGTC 502
Query 517 TTAGCCATCTGTGTGAGAGATGGATGTGTAGAGGGTTTA-ATCATCATTGAGACGATTCG 575
| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 503 TAAGCCATCTGTGGGAGAGATGGATGTGTAGAGGGTTTTTATCATCATTGAGACGATTCG 562
Query 576 ATTCATTTGGTTTTGATTTGAGATTGGATTTTTCTTCCCTGCCCTTTGTGGTAGTAGGT- 634
|||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||
Sbjct 563 ATTCATTTGGTTTTGA---GA--TTGGATTTT-CTTCCCTGCCCTTTGTGGTGGTAGGTT 616
Query 635 GATTTAGATGTTTAGGAAGAATTAAGAAGAGTTCTTGAGAGTGATAGAGGTCATTGAATT 694
|||| |||||||||||||||| ||| || ||||||||||| | || | |
Sbjct 617 GATT-AGATGTTTAGGAAGAA----GAA---TTATTGAGAGTGAT-----T--TT-A-T- 658
Query 695 GTTCTTTTTATCTGATGAAGTATAGCTTTCATAATGGAAAAACGCG---AACCCTCTTTA 751
|| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 ---CT--------GATGAAGTATAGCTTTCATAATGGAAAAACGCGGTGAACCCTCTTTA 707
Query 752 GTTCCTGAATGGTTGAGAAGTTCAGGACATGGTTCTGGTGTTGGGAGTTCAAATTCT-CT 810
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 708 GTACCTGAATGGTTGAGAAGTTCAGGACATGGTTCTGGTGTTGGGAGTTCAAAT-CAGCT 766
Query 811 TTCAG-ATTCTTTACGTAATAGCAAGAATAGGAATGCTAGGAGCAGAAGTGATGCTGATT 869
|| | || |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 767 TTTATCAT-CTTTACGTAATAGCAAGAATAGGAATTCTAGGAGCAGAAGTGATGTTGATT 825
Query 870 CAGTTGGGTCTCCTTTTCTCGACCGGTCTTCTTCCACCAATACGAGGAGGGGATCTAGTA 929
||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 826 CAGTTCGGTCTCCTTTTCTCGATCGGTCTTCTTCTACCAATACAAGGAGGGGATCTAGTA 885
Query 930 ATGGGTCTACAAAACATGCATATAGTAGTTTCAACTTTAATAGGAGCAACAGAGATAAAG 989
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 886 ATGGTTCTACCAAACATGCATATAGTAGTTTCAACTTCAATAGGAGCAACAGAGATAAAG 945
Query 990 ATCGGAGCAGGGAGAAGGATAGGATGAGCTACATGGATCCATGGGACAATGATAGTTCTA 1049
|||||||||||||||| |||||| ||||||||||||||||||||||| |||| | ||||
Sbjct 946 ATCGGAGCAGGGAGAAAGATAGGTTGAGCTACATGGATCCATGGGACCATGACACTTCTC 1005
Query 1050 TGCCTTTTGGAACCTTCTTGATTGGTAGGGGAGAGGAGCCACTGAGACGATCACATTCAA 1109
|||||||||||||| || ||||||||| |||| |||||| |||||||||||||||||| |
Sbjct 1006 TGCCTTTTGGAACCATCGTGATTGGTACGGGACAGGAGCAACTGAGACGATCACATTCCA 1065
Query 1110 TGACAACAAGGAAACAGGGAAACCATCTGGCTCAAGGATTTACAGTAGGATATAAAAATG 1169
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGACAACAAGGAAACAGGGCAACCATCTGGCTCAAGGATTTACAGTAGGATATAAAAATG 1125
Query 1170 GTGGAAACATTAATACTTTCAACGGACATGGTATACTTCCTGGAACTAGCCCTGTAAAGA 1229
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1126 GTGGAAACATTAATACTTACAACGGACATGGTATACTTCCTGGAACTAGCCCTGCAAAGA 1185
Query 1230 GCTCCAAAAGAATGGGTTTCAATAAGGATTTTCCTTTGCTTAGAGGTGAAGAGAGAAATG 1289
|||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1186 GCTCCAAAAGAACAGGTTTCGATAAGGATTTTCCTTTGCTTAGAGCTGAAGAGAGAAATG 1245
Query 1290 GAGGCCCAGACGTTGTAAGAATCTCATCTCCTGGTCGAAGTCCTACTGCTCAGAGCTTGT 1349
||||||||||||| |||||||| ||||||||| || |||||| ||||||||||||||||
Sbjct 1246 GAGGCCCAGACGTCGTAAGAATAGCATCTCCTGTTCTAAGTCCAACTGCTCAGAGCTTGT 1305
Query 1350 CAGTTGCTAATCCAGCCTTGATTATCGGGGAAGGTTGGACATCGGCTCTGGCAGAGGTTC 1409
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1306 CAGTTGGTAATCCAGCCTTGATTGTTGGGGAAGGTTGGACATCGGCTCTGGCAGAGGTTC 1365
Query 1410 CCAATGTTATTGAGAAGAGTGGTGGTGCTGAATCCCATGCTAATGTGGGTAATTCGGCTA 1469
| ||||||||||||||||||||| || | |||||| ||||||| |||| ||||||||
Sbjct 1366 CAAATGTTATTGAGAAGAGTGGTACTGGT---TCCCATTCTAATGTTGGTAGTTCGGCTA 1422
Query 1470 CCTTATCTGG-ACCAGCTTGTCGTAACATGGCTGAAGCATTGGTGCAGGCTCCAGGAAGA 1528
||||| | || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 CCTTAAC-GGTACCAACTTGTCGTAACATGGCTGAAGCATTGGTGCAGGCTCCAGGAAGA 1481
Query 1529 ACTGGTACACCACCCCAGGCACAAACACTTGAGGACCGAGCTATTAGGCAATCTAGGCAG 1588
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1482 ACTGTTACACCACCCCAGGCACAAACACTTGAGGACCGAGCTATTAGGCAGTCTAGGCAG 1541
Query 1589 TTGATACCGGTTGTGCCTTCAGCACCAAAGGGCTCAGTTCATAACTCTTCTGATAAATCC 1648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 TTGATACCTGTTGTGCCTTCAGCACCAAAGGGCTCAGTTCATAACTCTTCTGATAAATCC 1601
Query 1649 AAGACCAAACCAATGTTTCGAAGTGGTGAAACCGGTCTTGCTTCTTCAAGAAATACCCAA 1708
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1602 AAGACCAAACCAATGTTTCGAAGTGGTGAAATCGGTCTTGCTTCTTCAAGAAATACCCAA 1661
Query 1709 CAGCAGTCCTCTGTGATGCTCGGTAATATGCAGTCTAATCCTGGTAGTCAGATCAAGCCT 1768
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1662 CAGCATTCCTCTGTGATGCTCGGTAATCTGCAGTCTAATCCTGGTAGTCAGATCAAGCCT 1721
Query 1769 GATACGACTAAGAAGCTGGTGATTCTCAAACCTGCTAGGGAAAATGGGGTAGTTGCTGGA 1828
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1722 GATACGACTAAGAAGCTGGTGATTCTCAAATCTGCTAGGGAAAATGGGGTAGTTGCTGGA 1781
Query 1829 GGTTCACCACCCAACAGCCGAGTTGCCGCTAGCCAGCCGACCACTGCCCCATCCACACAA 1888
||||||||||||| |||||||| ||| |||||||||| ||||||||| ||||| ||||||
Sbjct 1782 GGTTCACCACCCAGCAGCCGAGCTGCTGCTAGCCAGCTGACCACTGCTCCATCTACACAA 1841
Query 1889 TTTACTGCTTCTGTGAGAAGCACAAATGGTCCAAGGGATCTCAGGGGAGCTTCTGTAAAC 1948
|||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1842 TTTACTGCTTCTGTGAGAAGTACAAATGGTCCAAGGGAGCCCAGGGGAGCTTCTGTAAAC 1901
Query 1949 ATGTTAGCTGGAAAAGCCGCTGAAAAGAAACTTTCCTTGGCTCAAACTCAGAGCAGGCAT 2008
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1902 ATGATAGCTGGAAAAACCGCTGAAAAGAAACTTTCCTTGGCTCAAACTCAGAGTAGGCAT 1961
Query 2009 GCATTTTACAGTGCTTTGAAGCAAAAAACATGTACGAACATCTCAACTGATCCATCAAAA 2068
||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1962 GCATTTTTCAGTGCTTTGAAGCAGAAAACATCTACAAACATCTCAACTGATCCATCAAAA 2021
Query 2069 ACCAGCTCTTGCATCTTGTCTTCAGTGGAGGAACAGGCAAACAGTTCTAAGGAGCTTGTA 2128
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2022 ACCAGCTCTTGCATCTTGTCTTCAGTGGAGGAAAAGGCAAACAGTTCTAAGGAGCTTGTA 2081
Query 2129 GCTAGTGACCCTTCAAGTCCACAAGCTGCAGAAAGAGATGAAATCATGGAAAGTGTCGAG 2188
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2082 GCTAGTGACCCTTCAAGTCCACAGGCTGCAGAAAGAGATGAAATCATGGAAAGTGTCGAG 2141
Query 2189 AAAGTTTCTAACGTTGCAGAAAGGATTAGTAGATTTGAATCGGCAGTCCGTCCAGATCCA 2248
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 AAAGTTTCTGATGTTGCAGAAAGGATTAGTAGATTTGAATCGGCAGTCCGTCCAGATCCA 2201
Query 2249 AAAGAGGCTGCATTCCTTAAATCCCTTGGTTGGGATGAGAATGATAGCGACGAATACACC 2308
||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||
Sbjct 2202 AAAGAGGCTGCGTTCCTTAAATCCCTTGGGTGGGATGAAAATGACAGCGAAGAATACACC 2261
Query 2309 CACACAATGGAGGAGATGAGAGAATGGTGCAAGAAGTTCAAGCCATCACTGCTGCAGAAG 2368
| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2262 CTCCCAATGGAGGAGATGATCGAATGGTGCAAGAAGTTCAAGCCATCACTGCTGCAGAAG 2321
Query 2369 CTGCCTATCATATAAGAAGCAACTGAGGACATAGCTCCCGACTCGTGATCAGATTTTGTT 2428
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2322 CTGCCTATCATATAAGAAGCAACCGAGGACATAGCTCCCGACTCG--ATCAGATTTTGTT 2379
Query 2429 CGGGGTTTTCAGATGGAAGATAGtttttcattctcttttcttttctttattctctttggt 2488
||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 2380 CGGGGTTC-CAGATGGAAGATAGTTTT-CGTTCTCTTTTCTTTTCTTTATTTTCTTTGGC 2437
Query 2489 ttttttttttttCTTTTGGTTACTTCGGCGCTGGCTAGAAGGTGGAAAGGCTTTAGTTGC 2548
||||||||||| ||||||||||||| || ||||| ||||||||| ||||||||||||||
Sbjct 2438 TTTTTTTTTTTAATTTTGGTTACTTCAGCTCTGGCAAGAAGGTGGGAAGGCTTTAGTTGC 2497
Query 2549 AGTAAGAGTATTGTTCTGCTTCTTCTTCAGAGGTGCAACAAAATGAAAAATG--GCTGAC 2606
||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 2498 AGTAAGAGTGTTGTTCTGCTTCTTCTTCAGAGTTGCTACAAAATGAAAAAAAAAGCTGAC 2557
Query 2607 TATTTTGTACATCTTTGGTCTGAAGATAAGTGGGCTTTGTCTATGGCATCTTCTTTTAGG 2666
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2558 TATTTTGTACATCTTTGGTCTGAAGATAAGAGGGCTTTGTCTTTGGCATCTTCTTTTAGG 2617
Query 2667 TTTTCTAATGTTTGATGATCATT-CAT----GGTGAGGGAAAGAGAAAATTGCCGATGGG 2721
||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||
Sbjct 2618 TTTTCTAATGTTTGATGATCATTTCATTCATGGTCAGGGAAAGAGAAAAATGCCGATGGG 2677
Query 2722 GGTTAAGTAGAAAAGTTAAAGAATTCGttttcttacctttttatgaaattcatcttttag 2781
|||| || |||||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2678 GGTTTAGCAGAAAATTTAAAGAATTCGTTTTCTTACCTTTTTATGAAATTTATCCTTTAG 2737
Query 2782 gcttatatattttatattatttattcatt 2810
|||| |||||||||||| ||||||| |||
Sbjct 2738 GCTTTTATATTTTATATAATTTATTTATT 2766
> Ahg913497 jgi|Araly1|913497|Al_scaffold_0001_3751
Length=1749
Score = 649 bits (351), Expect = 0.0
Identities = 1083/1415 (77%), Gaps = 136/1415 (10%)
Strand=Plus/Plus
Query 826 TAATAGCAAGAATAGGAA-TGCTAGGAGCAGAAGTGATGCTGATTCAGTTGGGTCTCCTT 884
|||||||| ||||||||| | ||||||||| |||||| | ||||||| || |||||||
Sbjct 129 TAATAGCAGGAATAGGAACT-CTAGGAGCAAAAGTGACGTTGATTCAATTCATTCTCCTT 187
Query 885 TTCTCGACCGGTCTTCTTCCACCAATACGAGGAGGGGATCTAGTAATGGGTCTACAAAAC 944
|||| || || |||||||| || ||| | |||||||| |||||||||| ||| |||| |
Sbjct 188 TTCTGGATCGATCTTCTTCTACTAATTCAAGGAGGGGCGCTAGTAATGGTTCTGCAAAGC 247
Query 945 ATGCATATAGTAGTTTCAACTTTAATAGGAG-CAACAGAGATAAAGATCGGAGCAGGGAG 1003
||||||||||||||||||||||||||||||| ||| || ||||| || || ||||||||
Sbjct 248 ATGCATATAGTAGTTTCAACTTTAATAGGAGTCAA-AGGGATAAGGACCGCAGCAGGGAC 306
Query 1004 AAGGATAGGATGAGCTACATGGATCCATGGGACAATGATAGTTCTATGCCTTTTGGAACC 1063
||||||||| | ||||| |||||||||||||| ||| | ||||| ||| || ||||
Sbjct 307 AAGGATAGGGTAAGCTATGTGGATCCATGGGACCTTGACACCTCTATCCCTCTTAGAAC- 365
Query 1064 T-TCTTGATTGGTAGGGGAGA-GGAGCCACTGAGACGATCACATTCAATGACAACAAGGA 1121
| |||||| |||||||| | ||| ||| |||||||||||||||||||| ||||||||
Sbjct 366 TATCTTGACTGGTAGGG-ATCCGGATCCATTGAGACGATCACATTCAATGGTAACAAGGA 424
Query 1122 AACAGGGAAACCATCTGGCTCAAGGATTTACAGTAGGATAT-AAAAATGGTGGAAACAT- 1179
|||||||| |||| ||| ||| |||||| ||||| || | | ||||||||||| | | |
Sbjct 425 AACAGGGAGACCACCTGTCTCGAGGATTAACAGTGGGCT-TGAAAAATGGTGGCA-C-TG 481
Query 1180 -TAATACTTTCAACGGACATGGTA-TACT-TCCTGGAACTAGCCCTGTAAAGAGCTC-CA 1235
||||| || ||| ||| | || | |||| || |||| ||||| || || |||| ||
Sbjct 482 GTAATAGTTACAATGGAAACGG-AGTACTCTC-TGGACCTAGCATTGGGAATAGCTTTCA 539
Query 1236 AAAGAA-TGGGTTTCAATAAGGATTTTCCTT-TGCTTAGAGGTGAAGAGA-G-AAA-TGG 1290
| ||| ||||||| | |||||||||||||| | ||| ||| |||||||| | ||| |||
Sbjct 540 GA-GAACTGGGTTTGA-TAAGGATTTTCCTTCT-CTTGGAGCTGAAGAGAAGCAAAATGG 596
Query 1291 AGGCCCAGACGTTGTAAGAATCTCATCTCCTGGTCGAAGTCCTA-CTGCTCAGAGCTTGT 1349
| | ||| |||||| || |||||||||||| | |||| | | ||| ||||| |||
Sbjct 597 -G-CA-AGATGTTGTACGAGTCTCATCTCCTGTTATAAGTTC-AGCTGTTCAGAACTTAC 652
Query 1350 CAGTTGCTAA-TCCAGCCTTGATTA-TCGGGGAAGGTTGGACATCGGCTCTGGCAGAGGT 1407
|||||| ||| || ||| |||||| | ||||||||||||||||| ||||||||||||||
Sbjct 653 CAGTTGGTAACTC-AGCTTTGATTGGT-GGGGAAGGTTGGACATCTGCTCTGGCAGAGGT 710
Query 1408 TCCCAATGTTATTGAGAAGAG-TGGT---GG-TGC-TGAA--TCCC-AT-G-CTAATG-T 1455
||||||||| || |||||| | | || || | | | || |||| | | |||||| |
Sbjct 711 TCCCAATGTCATCGAGAAG-GCTTGTACTGGGT-CATTAACGTCCCCAAAGGCTAATGCT 768
Query 1456 GGGTAATTCGGCTACCTTATCTGGACCAGCTTGTCGTAACATGGCTGAAGCATTGGTGCA 1515
| || ||| || ||| ||||| || || ||| ||||||||| ||||||||||| ||
Sbjct 769 GT-TAGCACGGGAACTTTAACTGGAACAACTGGTCTTAACATGGCAGAAGCATTGGTTCA 827
Query 1516 GGCTCCAGGAAGAACTGGTACACCACCCCA-GG--C----A---CA-AAC-ACTTGAGGA 1563
|||||||| ||||| | || || ||||| || | | || ||| ||| |||||
Sbjct 828 GGCTCCAGCAAGAAGTCACACCCCTCCCCAAGGATCGGTGAAGACACAACGACTCGAGGA 887
Query 1564 CC-GAGCTATTAGGCAATCTAGGCAGTTGATACCGGTTGTGCCTTCAGCACCAAAGGGCT 1622
| | || || | ||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 888 CTTG-GCAATCAAGCAGTCAAGGCAATTGATACCGGTTGTGCCTTCAGCACCAAAGTGCT 946
Query 1623 C-AGTTCAT-AACTCTTCTGATAAATCCAAGACCAAACCAA-TGTTTCGAAGTGGTGAAA 1679
| ||| | | || |||||||||||||||||||| || | || || |||||| ||||||||
Sbjct 947 CGAGT-C-TGAATTCTTCTGATAAATCCAAGACTAAGC-AAGTGGTTCGAACTGGTGAAA 1003
Query 1680 CCGGTCTTGCTTCTTCAAGAAATACCCAACAGCAGTCCTCTGTGATGCTCGGTAATATGC 1739
| |||||||| | ||||||||| ||||||| ||| ||||||| | || || ||| | |
Sbjct 1004 CTTGTCTTGCTCCCTCAAGAAATGCCCAACAACAGCCCTCTGTCCTACTTGGGAATTTCC 1063
Query 1740 AGTCTAATCCTGGTAGTCAGATCAAGCCTGATACGACTAAGAAGCTGGTGATTCTCAAAC 1799
||||||||||| || |||| ||||| ||||| || | ||||||| || |||||||||
Sbjct 1064 AGTCTAATCCTAGTGGTCAAATCAAACCTGA---GA--A-GAAGCTGTTGGTTCTCAAAC 1117
Query 1800 CTGCTAGGGAAAATGGGGT-AGTTGCTGG-AG-GT-TC---A--CC--ACC-C-AA--CA 1844
| |||||||||||||| || ||| |||| | | || | || | | || ||
Sbjct 1118 CGGCTAGGGAAAATGGTGTCAGT-GCTGTTAAAGAATCTGGAAGCCCTAGTGCTAATACA 1176
Query 1845 G-C-C--GAGTTGCCGCTAGCCAGCCGA---CCACTGCCCCATCCACACAATTTACTGCT 1897
| | ||| ||| ||||||||| || ||| ||| | ||| || |||| |||||
Sbjct 1177 AACACTCGAGCCGCCTCTAGCCAGCTGATGTCCAATGCTCAATCAACGCAAT---CTGCT 1233
Query 1898 TCTGTGAGAAGCACAAATGGTCCAAGGGATCTCAGGGGAGCTTCTG--TAAAC-ATGTTA 1954
|||||||||| ||||| | |||| ||| |||| ||||||| || | | ||| ||
Sbjct 1234 CCTGTGAGAAGTACAAACAGCCCAAAGGAGCTCAAGGGAGCTAGTGCCTTCTCCATGATA 1293
Query 1955 GCTGGA-AAAGCCG-CTGAAAAGAAA-CTTTC-CTTGGCTCAAACTCAGAGCAGGCA-TG 2009
|||| ||| | | | ||||||||| ||| | || | ||||||||||||||||| | ||
Sbjct 1294 TCTGGCCAAA-CTGTC-GAAAAGAAATCTTCCACT-G-CTCAAACTCAGAGCAGG-AGTG 1348
Query 2010 CATTTTACAGTGCTTTGAAGCA-AAAAACA-TGTA-CGA-A--CATCTCAACTGATCCA- 2062
|||||||||||||| ||||||| ||||| | || | | | | |||||| || |||||
Sbjct 1349 CATTTTACAGTGCTCTGAAGCAGAAAAAAACTGCATCAACAAGCATCTCCACCGATCCCG 1408
Query 2063 TCAAA-----AACCAGCTCTTGCATCTTGTCTTCAGTGGAGG-AACAGGCAAACAGTTCT 2116
| || |||||| | | | |||| |||| || |||| || || ||| ||| |||
Sbjct 1409 TTAACTCTTCAACCAG-TGT--C-TCTT--CTTCTGTTGAGGGAAAAGTCAA-CAGCTCT 1461
Query 2117 AAGGAGCTTGTAGCTAGTGACCCTTCAAGTCCACA 2151
||||| ||| |||||||||||||||||||||||||
Sbjct 1462 AAGGATCTTATAGCTAGTGACCCTTCAAGTCCACA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106424144530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5