BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08520.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942641 jgi|Araly1|942641|scaffold_603185.1 942 0.0
Ahg478303 jgi|Araly1|478303|fgenesh2_kg.3__1004__AT3G09800.1 688 0.0
> Ahg942641 jgi|Araly1|942641|scaffold_603185.1
Length=587
Score = 942 bits (510), Expect = 0.0
Identities = 555/577 (96%), Gaps = 1/577 (0%)
Strand=Plus/Plus
Query 54 TCAAAAACAATGGCAGGGACTAATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTA 113
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TCAACAACAATGGCAGGGACTAATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTA 71
Query 114 GACTCTGAAGGAAAGCGTGTGGCTGTCAAGTATTACTCCGATGATTGGGCAACTAATGCT 173
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 72 GACTCTGAAGGAAAGCGTGTGGCTGTCAAGTATTACTCAGATGATTGGACAACTAATGCT 131
Query 174 TCCAAGTTAGCTTTTGAAAAATATGTCTTCTCGAAAACCTCCAAGACCAATGCTCGCACA 233
||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct 132 GCCAAGTTAGCTTTTGAAAAATATGTATTCTCGAAGACCTCTAAAACCAATGCTCGCACA 191
Query 234 GAAGCTGAGATCACACTGTTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGGACCTG 293
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 192 GAAGCGGAGATCACACTGTTGGAGAATAATATTGTTGTCTATAAGTTTGCCCAGGATCTG 251
Query 294 CATTTCTTTGTTACTGGAGGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAA 353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CATTTCTTTGTTACCGGAGGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAA 311
Query 354 GGCTTTTTTGATGCTGTTGCGTTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTT 413
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 312 GGCTTTTTTGATGCTGTTGCATTACTTCTGAGGAACAATGTTGAAAAGATGGAAGCCCTT 371
Query 414 GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTACTT 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 372 GAAAACTTGGATCTCATCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTTCTC 431
Query 474 GAAACAGACGCGAATGTTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGT 533
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 432 GAAACAGATGCCAATGTTATTGCGGGAAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGT 491
Query 534 TCACTCTCTGAACAGACATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGA 593
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 TCACTCTCTGAACAGACGTTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCAAGA 551
Query 594 AGTCTTCTTACATAAATTTTCATCGTGGGAGCGAAAT 630
||||||||||||||| ||||||||||||||| |||||
Sbjct 552 AGTCTTCTTACATAA-TTTTCATCGTGGGAGAGAAAT 587
> Ahg478303 jgi|Araly1|478303|fgenesh2_kg.3__1004__AT3G09800.1
Length=879
Score = 688 bits (372), Expect = 0.0
Identities = 484/537 (90%), Gaps = 12/537 (2%)
Strand=Plus/Plus
Query 76 ATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGG 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 ATGATTCTTGTCCTTTGGTAAAGAACATTCTTCTTCTAGACTCTGAAGGAAAGCGTGTGG 191
Query 136 CTGTCAAGTATTACTCCGATGATTGGGCAA-CTAATGCT-TCCAAGTTA-GCTTTTGAAA 192
|||||||||||||||| ||||| ||| ||| ||||||| || |||||| | |||||| |
Sbjct 192 CTGTCAAGTATTACTCGGATGACTGG-CAAACTAATGCCGTC-AAGTTAAG-TTTTGAGA 248
Query 193 AATATGTCTTCTCGAAA-ACCTCCAAGACCAATGCTCGCACAGAAGCTGAGATCACACTG 251
||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 249 AATATGTATTCTC-AAAGACCTCTAAGACCAATGCTCGCACAGAAGCTGAGATCACACTG 307
Query 252 TTGGAGAGTAATATTGTTGTCTATAAGTTTGCCCAGGACCTGCATTTCTTTGTTACTGGA 311
||||| | |||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 308 TTGGACAACAATATTATTGTCTATAAGTTTGCCCAGGACCTTCACTTCTTTGTTACTGGA 367
Query 312 GGTGAAAATGAAAACGAGCTCGTCTTATCATCTGTTCTTCAAGGCTTTTTTGATGCTGTT 371
||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 368 GGTGAAAATGAGAACGAGCTCATCTTAGCTTCTGTTCTTCAAGGCTTTTTTGATGCTGTT 427
Query 372 GCG-TTACTTCT-GAGGAACAATGTTGAAAAGATGGAAGCCCTTGAAAACTTGGATCTCA 429
|| || || || |||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 428 GCACTT-CT-CTTGAGGAACAATGTGGAAAAGATGGAAGCCCTCGAGAACTTGGATCTCA 485
Query 430 TCTTTTTGTGCCTTGATGAGATGGTTGATCAAGGGATGGTACTTGAAACAGACGCGAATG 489
||||||| ||||||||||| ||||| ||||| ||| |||| |||||||| ||| | || |
Sbjct 486 TCTTTTTATGCCTTGATGAAATGGTCGATCAGGGGGTGGTTCTTGAAACGGACCCAAACG 545
Query 490 TTATTGCGGGGAAAGTAGCAATGCAAAGCGCAGAAGCAAGTGGTTCACTCTCTGAACAGA 549
| |||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 546 TCATTGCGGGTAAAGTAGCAATGCAGAGCACAGAAGCTAGTGGTTCACTCTCTGAACAGA 605
Query 550 CATTAACTCAAGCATTGGCAACAGCTCGGGAGCACCTTGCGAGAAGTCTTCTTACAT 606
||||||||||||| | ||||||||||||||||| || ||||||||||| |||||||
Sbjct 606 CATTAACTCAAGCGCTAGCAACAGCTCGGGAGCATCTGGCGAGAAGTCTGCTTACAT 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5