BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08530.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894982 jgi|Araly1|894982|Al_scaffold_0006_2978 390 4e-108
> Ahg894982 jgi|Araly1|894982|Al_scaffold_0006_2978
Length=321
Score = 390 bits (211), Expect = 4e-108
Identities = 262/286 (92%), Gaps = 6/286 (2%)
Strand=Plus/Plus
Query 65 ATGGTGACTTACCCGAATGGTGATAGACACTGTGTAATGGCCCAAGGCCAAGTGATAAGT 124
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGTGAGTTACCCGAATGGCGATAGACACTGTGTAATGGCGCAAGGCCAAGTGATAAGT 60
Query 125 GCATGCTTGCAACAAG---CC---AACGGACTACCACATGCGGATTGTTGCTATGCCATA 178
|||||||||||||||| || || ||||||| |||||| |||||||||||||| |||
Sbjct 61 GCATGCTTGCAACAAGCCACCGTTAATGGACTACTACATGCAGATTGTTGCTATGCTATA 120
Query 179 AACGATGTAAACAGATATGTAGAGACAATCTACGGTCGTTTAGCTCTTTGCAAATGTTTC 238
||||||||||||||| | | |||||||| |||||||||| |||| |||||||||||||||
Sbjct 121 AACGATGTAAACAGACAAGCAGAGACAACCTACGGTCGTATAGCGCTTTGCAAATGTTTC 180
Query 239 CAGGAAATTCTAAAAGATTCTCGATTTACAAAACTTATTGGTATGCCTGAAAAATGTGCC 298
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 181 CAGGAAATTTTAAAAGATTCTCGATTTACAAAACTTATTGGTATGCCGGAAAAATGTGTC 240
Query 299 ATTCCTAATGCTGTGCCTTTTGACCCCAAAACGGATTGTGACAGGT 344
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATTCCTAATGCTGTGCCTTTTGACCCCAAAATTGATTGTGACAGGT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5