BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08540.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351968 jgi|Araly1|351968|fgenesh1_pg.C_scaffold_6002561 1136 0.0
> Ahg351968 jgi|Araly1|351968|fgenesh1_pg.C_scaffold_6002561
Length=1344
Score = 1136 bits (615), Expect = 0.0
Identities = 709/756 (94%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 116 ATGACAAAACGATCCAGTAACTGCGCTATTTGCGACAACACTAATCGTCCTTGTATCTGT 175
|||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1 ATGATAAAACGATCCAGTAACTGCGCTATTTGCGAGAATACTAATCGTTCTTGTATCTGT 60
Query 176 ACTGCTTGCGTTAATCATAGATTGATTGAGTATAACACTTTGTTGAAGTCACTCAAAACT 235
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGTGCTTGCGTTAATCATAGATTGATTGAGTATAACACTTTGTTGAAGTCACTCAAGACT 120
Query 236 CGAAGAGATTCATTATTATCAAGATTCAATGAGCTATTGGAATCTAAGGGTAAAGCTGAT 295
||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 121 CGAAGAGATTCTTTATTATCAAGATTGAATCACCTATTGGAATCTAAGGGTAAAGCTGAT 180
Query 296 GATCAGAAGAATTGGAGATTGATTCAAAACGAGAAGATTTCGAAGTTGAAGAAGAAGCTT 355
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 181 GATCAGAAGAATTGGAGATTGATTCAAAACGAGAATATTTTGAAGTTGAAGAAGAAACTT 240
Query 356 AAGAGTAATAAGGAGTTAGTTACTCAAGGGAAGGTTAAGATTGAGAGAGGGTCTTCTGAT 415
|||||||||||||| || |||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 241 AAGAGTAATAAGGAATTGGTTACTCAAGGGAAGGGTAAGATTGAGAGAGGATCTTGTGAT 300
Query 416 CTTAAAGTTAAATATGGAGTTCTTGATTCAGCTCGTTCTACTCTTGAGAAAACTAGAGTT 475
|||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 301 CTTAAAGTTAAATATGGAGTTCTTGATTCAGCTCGTTCCACGCTTGAGAAAATTAGAGTT 360
Query 476 GAACAAGTGGAGAAGTATTTTCCTAATTTGATATGTACTCAGAGCCTTGGTCATATGGCG 535
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 361 GAACAAGTGGAGAAGTATTTTCCTAATCTAATATGTACACAGAGCCTTGGTCATATGGCG 420
Query 536 ATTTCGTCTGAGCGTCTTCATAAGCAGTCAGTTGTTGTGAAACAGATATGCAAATTGTTT 595
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 421 ATTTCATCTGAGCGTCTTCATAAGCAGTCGGTGGTTGTGAAACAGATATGCAAATTGTTT 480
Query 596 CCTTTACGTCGAGTTAGTTTTGATGGAGAGAGTCAGAACGGTTCAGTTCGTCAATATGAT 655
||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCTGCGCCGAGTTAGTTTTGACGGAGAGAGTCAGAACGGTTCAGTTCGTCAATATGAT 540
Query 656 GTAATTTGCAATTCACGTCTTCCGAGTGGTTTGGATCCTCATTCTATCCCATCAGAAGAG 715
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 541 GTAATTTGCAATTCACGTCTCCCGAGTGGTTTGGACCCTCATTCCATCCCATCAGAAGAG 600
Query 716 CTTGCTGTCTCGTTGGGGTATATGGTCCAGCTTCTGAATCTTGTTGTTCATAACTTAGCC 775
|| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||| ||||
Sbjct 601 CTCGCTGTCTCTTTGGGGTATATGGTCCAACTTCTGAACCTTGTTGTTCAAAACGTAGCT 660
Query 776 GCTCCTGCACTACATAGCTCGGGTTTTGCGGGCTCTTGCTCTCGTATTTGGCAACGAGAT 835
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 661 GCTCCTGCACTACATAGCTCAGGTTTTGCGAGCTCTTGCTCCCGTATTTGGCAACGAGAT 720
Query 836 TCATATTGGGACGGACGTACTTCTACTCGAAGCAAT 871
|| |||||||||| |||||| |||||||||||||||
Sbjct 721 TCCTATTGGGACGCACGTACCTCTACTCGAAGCAAT 756
Score = 889 bits (481), Expect = 0.0
Identities = 557/594 (94%), Gaps = 3/594 (1%)
Strand=Plus/Plus
Query 947 AGCAATTTCGGTGTTGCTTCCATGGAGTCCGATAGAAAAGAACCCCGTCTGGACTCTCCA 1006
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 751 AGCAATTTTGGTGTTGCTTCCATGGAATCCGATAGAAAAGAACCGCGTCTGGACTCTACA 810
Query 1007 GGAAGCAACAGCTTTAAGTACTCCTCTGCCTCTCCTCATTCGATTGAGTCACACAGAGAT 1066
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 811 GGAAGCAACAGCTTTAAGTACTCCTCTGCTTCTCCTCATTCGATTGAGTCACACAGAGAC 870
Query 1067 CTACAGAAAGGGATAGCTCTTCTCAAGAAAAGTGTTGCGTGCTTGACTGCGTATTGTTAC 1126
|| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 871 CTGCAGAAAGGGATAGCTCTTCTCAAGAAAAGTGTTGCATGCTTAACAGCGTATTGTTAC 930
Query 1127 AATTCACTTTGCCTTGAAGTACCTCCCGAGGCGTCAACTTTTGAAGCATTTGCCAAGTTA 1186
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 931 AACTCACTTTGCCTTGAAGTACCTCCCGAGGCCTCGACTTTTGAAGCATTTGCCAAGTTA 990
Query 1187 CTGGCTACACTTTCGTCATCAAAGGAGGTCCGGTCTGTTTTCTCCTTGAAAATGGCTTCT 1246
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 991 TTGGCCACACTTTCGTCATCAAAGGAGGTCCGGTCTGTTTTCTCCCTGAAAATGGCTTCT 1050
Query 1247 TCAAGATCAGGCAAGCAGGCTCAACAACTCAACAAATCCATATGGAACGCTCACTCAGTC 1306
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1051 TCAAGATCATGCAAGCAGGCTCCACAACTCAACAAATCCATATGGAACGCTCACTCAGTC 1110
Query 1307 ATCTCGAGCTCCTTACTCGAAAGTGCTCATCTTCC---GAGGAACACAAGTTACAACCAG 1363
|| || ||||| ||||| |||||||| |||||||| ||||||||||| ||| ||||||
Sbjct 1111 ATTTCAAGCTCTTTACTTGAAAGTGCACATCTTCCGGAGAGGAACACAAATTATAACCAG 1170
Query 1364 GACCCGAACTCACCAGCCAGTTATCTCTCTGCAACCGAATTATCAACCCGAAAGAACAAC 1423
|| || |||||| ||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 1171 GATCCAAACTCAGCAGCCAGTTATCTCTCTTCAACCGCATCATCAACCCGAAAGAACAAC 1230
Query 1424 GATATGAACGGATGGGATTTGGTGGAGCATCCTAAGTACCCGCCACCACCTTCACAGTCC 1483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1231 GATATGAACGGATGGGATTTGGTGGAACATCCTAAGTACCCGCCACCACCTTCACAGTCC 1290
Query 1484 GAGGATGTTGAACATTGGACTCGTGCTATGTTTATCGATGCCAAGAAGAAATGA 1537
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1291 GAGGATGTTGAACACTGGACTCGCGCTATGTTTATCGATGCCAAGAAGAAATGA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5