BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08550.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327097 jgi|Araly1|327097|fgenesh1_pm.C_scaffold_6002317 1999 0.0
> Ahg327097 jgi|Araly1|327097|fgenesh1_pm.C_scaffold_6002317
Length=1710
Score = 1999 bits (1082), Expect = 0.0
Identities = 1462/1640 (89%), Gaps = 48/1640 (3%)
Strand=Plus/Plus
Query 166 GAAGAGTTTACTCGTAAACCGGTTGTCGAAATC--------GA-GGAGG--AA-GA-G-- 210
||||||||| ||||||||||||||| ||||||| || ||||| || || |
Sbjct 76 GAAGAGTTTTCTCGTAAACCGGTTGACGAAATCGAGGAGATGATGGAGGATAATGAGGAT 135
Query 211 GAGGAGATGGAGTCTATAGATATTCATGAAGAAGAAGAAGGAGATAATAACGTTTCCCTT 270
||||||||||||||||||||||||||||||| || |||||||| || | ||| | |
Sbjct 136 GAGGAGATGGAGTCTATAGATATTCATGAAG-AG--GAAGGAGACAAGATTGTTACTATG 192
Query 271 GATGAGATAATGTCTGTAGATAGTAG-TGATGATGATGA-TGATAG---TG-AGAGTTC- 323
|||||||||||||||||||||||| | |||||||||| | ||| || || || ||
Sbjct 193 GATGAGATAATGTCTGTAGATAGT-GATGATGATGAT-AGTGAGAGTTCTGCTGA-ATCA 249
Query 324 --CGCTGAAATAACGAAAGCTTGTGAAGAAACTGTTGTTGAT-G-AAC-GAA--GCGGA- 375
|| |||||||||||||||| |||||||| | |||| |||| | | | ||| | |
Sbjct 250 AACGATGAAATAACGAAAGCTCGTGAAGAATCGGTTGATGATCGCAGCGGAATTTCTCAC 309
Query 376 -A-T-ATCACAAGAATCTAATTCATCAACTTCTTCTGCATGGACAGAGAAAGCAGCGGCG 432
| | ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 310 CACTCATCACCGGAATCAAATTCATCAACTTCTTCTGCTTGGACAGAGAAAGCAGCTGCG 369
Query 433 ATCAAGAACTTTGTTAGAGCGAAGAGCGAAGTTGCGGTACATACAATGATTCGTCGGCTT 492
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 370 ATCAAGAACTTTGTTAGAGTGAAGAGCGAAGTTGCGGTACATACATTGATTCGTCGACTT 429
Query 493 TCTGGTAAACTAAGTATTGACAATGCAGCTCATGGGACTA-A-A-GATGA--TG--A--G 543
|| || ||||||||| ||||||||||||||||||| |||| | | ||||| || |
Sbjct 430 TCCGGGAAACTAAGTGTTGACAATGCAGCTCATGGTACTAGAGATGATGAGGTGAAATCA 489
Query 544 GTGGAATCTCCTAAAACAGAAGGAAAGTCTTTGTGGAATCCTTTAAGCTATTTGAAGATG 603
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 490 GTGGACTCTCCTAAAACAGAAGGAAAGTCTATGTGGAATCCTTTAAGCTATTTAAAGATG 549
Query 604 ATGCAAAACGACGAAGATTTGGTTTATAGAGAAGAGGAGACAGTGTTTGAGCCTGTAGTG 663
||||| |||||||| |||| |||| ||| |||||| ||| || || ||||||||||||
Sbjct 550 ATGCAGAACGACGATGATTCGGTTGATACAGAAGAAGAGGTAGCATTGGAGCCTGTAGTG 609
Query 664 ATGAAAGGTAGGATTATATTGTATACAAGACTAGGATGTGAGGAATGCAGAGGATGTAGA 723
||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 610 ATGAAAGGTAGGATTATATTGTATACAAGACTAGGGTGTGAGGAGTGCAGAGAATGTAGG 669
Query 724 TTGTTTTTGCATGAAAAGAGGCTAAGATATGTCGAGATTAACATCGATATTTACCCGACA 783
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 670 TTGTTTTTGCATGAAAAGAGGTTAAGATATGTCGAGATTAACATCGATATTTACCCGTCA 729
Query 784 AGAAAGGTGGAGCTAGAAAAGATTAGTGGAGGAGATGTTGTTCCTATGGTATTCTTTAAT 843
||||| ||||| | ||||||||| |||| |||||||| | ||||| ||| || ||||||
Sbjct 730 AGAAAACTGGAGTTGGAAAAGATTTGTGGCGGAGATGTCGCTCCTAAGGTTTTTTTTAAT 789
Query 844 GAAAAGTTAGTTGGGAGTTATAAGGAGCTTAAGGTATTGGAGGAATCAGGAGAGCTTGAG 903
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GACGAGTTAGTTGGGAGTTTTAAGGAGCTTAAGGTATTGGAGGAATCAGGAGAGCTTGAG 849
Query 904 GAGAAGATCAAACATTTGATAGAAGAAACACCGCCTCGGGAAGCTCCTTTACCGCCTTTT 963
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||
Sbjct 850 GAGAAGATCAAACATTTGATAGAAGAAGCACCGCCTCGGGAAGCTCCTCTGCCACCTTTT 909
Query 964 TCAGGGGAAGATGATGCATCGAGTAAAGGACCTGTTGATGAGCTAGCTTTAATAGTGTTG 1023
|||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 910 TCAGGGGAAGATGATGCATCAAGTAAAGGTCCTGTAGATGAACTAGCTTTAATAGTGTTG 969
Query 1024 AAGATGAAGCCTTGTGTAGTTAAGGATCGGTTTTATAAGATGCGTAGGTTTAAAAACTGT 1083
|||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 970 AAGATGAAGCCTTGCGTAGTTAAGGATCGGTTTTATAAAATGAGAAGGTTTAAAAACTGT 1029
Query 1084 TTCTTAGGTTCTGAAGCTGTTGATTTCTTATCTGCGGATCAACGACTAGAAAGAGATGGG 1143
||||||||||| |||||||| ||||||||||| ||||||||| | ||||||||||| |||
Sbjct 1030 TTCTTAGGTTCGGAAGCTGTGGATTTCTTATCCGCGGATCAAAGTCTAGAAAGAGACGGG 1089
Query 1144 CCAAGGCCGATTGTGGAAATCGCATCGAGACTCAGACTTGTGTACCGAGCGATTCTTGAA 1203
||||||||||| ||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct 1090 CCAAGGCCGATCGTGGAAATCGCGTCAAGGCTCAGACTTGTGTATCGAGCAATTCTTGAA 1149
Query 1204 GCTTACACTTCACCGGATGGAAAACATGTGGACTATAGAAGCATCCATGGGAGTGAAGAG 1263
||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1150 GCTTACACTTCGCCAGATGGAAAACATGTAGACTACAGAAGCATCCATGGGAGTGAAGAG 1209
Query 1264 TTTGCAAGGTACTTGCGAATAATCCAGGAGCTTCATAGAGTAGAGCTTGAAGATATGCAA 1323
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1210 TTTGCAAGGTACCTACGAATAATCCAGGAGCTCCATAGAGTAGAGCTTGAAGATATGCAG 1269
Query 1324 AGAGAGGAAAAGCTAGCGTTCTTCATAAACCTTTATAACATGATGGCTATACATTCAATA 1383
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1270 AGAGAGGAAAAGCTCGCGTTCTTCATAAACCTTTATAACATGATGGCTATACACTCAATA 1329
Query 1384 CTAGTATGGGGACATCCAGCAGGAACTTTTGATCGAACCAAGATGTTTATGGACTTCAAG 1443
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1330 CTAGTATGGGGCCATCCGGCAGGAACTTTTGATCGGACGAAGATGTTTATGGACTTCAAG 1389
Query 1444 TATGTGATTGGTGGCTACACTTACTCGCTTTCGGCTATACAAAATGGAATTCTAAGGGGT 1503
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TATGTGATTGGCGGCAACACCTACTCGCTTTCGGCTATACAAAATGGAATTCTAAGGGGT 1449
Query 1504 AACCAGCGACCGATGTTTAATCCTATGAAACCATTTGGTGTAAAGGATAAACGTTCCAAG 1563
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1450 AACCAGCGACCGATGTTCAATCCTATGAAACCATTTGGTGCAAAGGACAAACGTTCCAAG 1509
Query 1564 GTTGCTCTGCCTTATGCAGAGCCTTTGACTCATTTTACTCTGGTTTGTGGAACTCGGTCT 1623
|||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||
Sbjct 1510 GTTGCTCTGCCTTATGCAGAGCCTCTAACTCATTTTGCTCTGGTTTGTGGAACGCGGTCT 1569
Query 1624 GGACCACCTCTTCGATGCTTCACGCCTGGAGAGATCGATAAAGAACTAATGGAGGCAGCT 1683
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1570 GGACCACCGCTTCGATGCTTCACACCTGGAGAGATCGATAAAGAACTCATGGAGGCAGCT 1629
Query 1684 CGCGATTTCTTAAGATGTGGTGGACTTAGAGTTGATCTCAATGCCAAAGTTGCAGAGATC 1743
|||||||||||||||||||||||||| | |||||||||||||| |||| ||||| | |||
Sbjct 1630 CGCGATTTCTTAAGATGTGGTGGACTCATAGTTGATCTCAATGACAAATTTGCATACATC 1689
Query 1744 AGCAAAATCTTTGATTGGTA 1763
| | |||||||| | |||||
Sbjct 1690 AACCAAATCTTTAACTGGTA 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5