BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08555.1

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489760 jgi|Araly1|489760|fgenesh2_kg.6__2894__AT4G08555.1         401    2e-111


> Ahg489760 jgi|Araly1|489760|fgenesh2_kg.6__2894__AT4G08555.1
Length=320

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 298/334 (89%), Gaps = 17/334 (5%)
 Strand=Plus/Plus

Query  10   CTCACTAAGTTTTAGACCAATCTTGATTCGTAGATTTTATTTTTGGAAGATGTACGGTGT  69
            |||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct  1    CTCATTAAGTTTCAGACCAATCTTGATTCG--GATTTTATTTTTGGAAGATGTACGGTGT  58

Query  70   CGGTGGATCGAGCACAGCGGGTTTCGCAGAAGCTTACGCGATGAGGAAGATTTATaaaga  129
             ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  59   TGGTGGATCGAGCACAACGGGTTTCGCAGAGGCTTACGCGATGAGGAAGATTTATAAGGA  118

Query  130  aaagatgaagatgaagcttgcagaggcaaaagtagaggaagaaaaagaa-aaTGTTGGAG  188
            |||||||||||||||||||||||| | ||||||||||||||| ||| || ||||||| ||
Sbjct  119  AAAGATGAAGATGAAGCTTGCAGACGTAAAAGTAGAGGAAGAGAAA-AACAATGTTGAAG  177

Query  189  -GTAAGAGTAAAATCTGGAAAACGAAGAAATCTAAGAAGACCCTCCATACTAATCCAAGG  247
             | ||||||||||||||||||||||||||| | |||||||||||||| | |||||| |||
Sbjct  178  AG-AAGAGTAAAATCTGGAAAACGAAGAAACCGAAGAAGACCCTCCAGATTAATCCGAGG  236

Query  248  GTTTCCTCTGCAGATATTTAAACATCTATATGTATATGGTTATGTAttttttttttttct  307
            |||||||||||||||||||||||| ||||  |||   | |||||||||| ||| ||||  
Sbjct  237  GTTTCCTCTGCAGATATTTAAACACCTAT--GTA---G-TTATGTATTTATTTATTTT--  288

Query  308  taacttttt-atgattggttcattttgttctttt  340
             |||||||| ||||| ||||||||||||| ||||
Sbjct  289  -AACTTTTTTATGATGGGTTCATTTTGTT-TTTT  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14003101163


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5