BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08560.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351970 jgi|Araly1|351970|fgenesh1_pg.C_scaffold_6002563 854 0.0
Ahg936480 jgi|Araly1|936480|scaffold_500671.1 237 2e-61
Ahg936481 jgi|Araly1|936481|scaffold_500672.1 222 5e-57
> Ahg351970 jgi|Araly1|351970|fgenesh1_pg.C_scaffold_6002563
Length=1302
Score = 854 bits (462), Expect = 0.0
Identities = 576/631 (91%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 416 CCCTT-GATGATGATGCATATGGTTATATGTATGGAATCCGCAATACTCTATTATCGCGT 474
||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 318 CCCTTGGA-G-TGATGCATATGGTTATATGTCTGGAATCCGCAATACTCTATTATCGCGT 375
Query 475 GCTAAAGACGGTATAGAGTCTCACATGTTGCAATATGTGATTGCCAAGGGTTTAAAGGAG 534
||||||||| |||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 376 GCTAAAGACCGTATAGAGTCTCGCCTGTTGCAAGATGTGATTGCCAAGGGTTCAAAGGAG 435
Query 535 ACAATTGATAAGATATTTGACAATTTGATCTCACATGTATGTGAATTGATGCTTGATTAT 594
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 436 ACAATTGATAAGATATTTGACAATTTGATCTCAAATGTTTGTGAATTGATGCTTGATCCT 495
Query 595 TATGGCCATAAAGTCTTTCG-AAAGCTTATGGAGAAATGCACCGATGAACAGATCACTCG 653
| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTTGGCCATCGCGTCTTT-GAAAAGCTTATGGAGAAATGCACCGATGAACAGATCACTCG 554
Query 654 GGTTTTGGATATAGTCCTTGAGGAACCTTTTGAATTTGTTAGGCTTTGTGTCCATACACA 713
||||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||
Sbjct 555 GGTTTTGGATATAGTCCTTCAGCAACCTCTTCAATTTGTTAGGCTTTGTGTCGATTCACA 614
Query 714 CGGAACACATGCAATACAAGGTTTGATGCGTAGTCTTTGTTCTGAAGAGCAAATATCTCG 773
|||||| | ||||||||||| ||||||||| ||||||||||||| |||||||||| ||||
Sbjct 615 CGGAACCCGTGCAATACAAGATTTGATGCGAAGTCTTTGTTCTGTAGAGCAAATAGCTCG 674
Query 774 GTTCATGGAAACTCTATGCTATGTTTCACTTCTATTGACCAAGGACGTTATTGCTCATCG 833
|||||||| ||| |||||| ||||| |||||||||||||||| |||| || |||| |||
Sbjct 675 GTTCATGGCAACACTATGCCATGTTGCACTTCTATTGACCAAAGACGCTAATGCTAATCT 734
Query 834 TGTGATTTTGTTCTGCTTCAATCAATTTTCTCCTTCACATACCAGATATCTTCTTGAAGT 893
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 735 TGTGATTTTGTTCTGCTTCAATCACTTTTCTCCTTCACATAGCAGATATCTTCTTGAAGT 794
Query 894 GATTGTTCAAAATTGTTATCAAGTTGCAATAGATCAAAATGGATGTTGTATGCTTAAAAA 953
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
Sbjct 795 GATTGTTCAAAATTGTTATCAAGTTGCAATTGATCAACATGGATATTGTATGCTTAACCA 854
Query 954 ATTG-ATTAGACAATCCTCTCGAGAGCTAAGAGACCCTTTGATTAAGGAGATAATCAGTA 1012
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 855 AT-GCATTAGACAATCCTCTCGAGAGCTAAGAGACCCTTTGATTAAGGAGATAATCACTA 913
Query 1013 TTGCTGTAAGATTATGCGGGAATTGCTACGG 1043
|| ||| ||||||||| ||||||||||||
Sbjct 914 ATGTTGTGAGATTATGCAAGAATTGCTACGG 944
Score = 383 bits (207), Expect = 2e-105
Identities = 238/253 (94%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1073 GAAACTACGTGGTGCAATATTTGTTGCG-TTTGAAAGATTATGAGGTGACAAGTGCTCTC 1131
|||||||||||||||||||| ||||| | |||| |||||| |||||| ||||||||||||
Sbjct 944 GAAACTACGTGGTGCAATATGTGTTG-GATTTGGAAGATTGTGAGGTTACAAGTGCTCTC 1002
Query 1132 TCGAAACATCTTGATGGAAATTACGTGCAACTCTCTTATGACAAGTATGGGAGTCACGTG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCGAAACATCTTGATGGAAATTACGTGCAACTCTCTTATGACAAGTATGGGAGTCACGTG 1062
Query 1192 GTGCAGAAGTGTTTGGAAAGTAGAGAATTTTCCTCCAGGAGGATCATAGCGGAGCTGCTA 1251
||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 1063 GTGCAGAAGTGTTTGGAAAATAGAGAATTTTGCTCCAGGAGGATCATAGCCGAGCTGCTA 1122
Query 1252 AGTGACATTGATTCACTTCTTGTAGATCCATATGGAGATTATGTGATTCAAACAGCGTGG 1311
|||||||||||||| |||||||||||||| | |||| ||||||||||||| || ||||||
Sbjct 1123 AGTGACATTGATTCTCTTCTTGTAGATCCGTTTGGAAATTATGTGATTCAGACCGCGTGG 1182
Query 1312 ATTGTATCCGAGG 1324
|||||||||||||
Sbjct 1183 ATTGTATCCGAGG 1195
Score = 97.1 bits (52), Expect = 3e-19
Identities = 65/71 (92%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 357 TGGAATCTCCCGCTCAACGGATTTTGTGGGAGCGTCTCAGAACTTACGACCATTCGTTTC 416
|||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2 TGGAATCTCCGGCCCAACGGATTAGGTGGGAGCTTCTCAGAACTTACGACCATTCGTTTC 61
Query 417 CCTTGA-TGAT 426
|||||| ||||
Sbjct 62 CCTTGAGTGAT 72
> Ahg936480 jgi|Araly1|936480|scaffold_500671.1
Length=409
Score = 237 bits (128), Expect = 2e-61
Identities = 217/260 (83%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 25 TTTGTGTTTAGCCTTTGCATGTTTGGCCATGTAT-CGAGAGCAAGAATCAGGATCGCGAA 83
||||| |||||| |||||||| | | |||||||| || | | || |||||||| ||||
Sbjct 3 TTTGTTTTTAGCATTTGCATGCTAGACCATGTATCCG-GCGGTGGATTCAGGATCTCGAA 61
Query 84 CGAGCTCAAATTCAAGAAAAACCTCTGGATGAGGTGTTATTCTAAAGATGATGTATTAGG 143
||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 62 CGAACTCAAATTCAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGG 121
Query 144 TCCACATATAATACCAATCGGAGGACATTTTCTAGATTATTTT-GGCACTAACTTTTGGG 202
|||| | ||||||||||||||| ||||| | | | | |||| | | ||||||||||
Sbjct 122 TCCAGACATAATACCAATCGGACAACATTAT-GAAAATCTTTTCGATATTAACTTTTGGC 180
Query 203 GTACCACCCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATATACACTATCA-AAGC 261
||| || |||||||||||||||||||||||||||||||| |||| ||||||||| || |
Sbjct 181 ATACAACGCGTTTTATGTGTACTTTGAGACAAGGTCCTAATTATAAACACTATCAGAA-C 239
Query 262 TTTACGGCATTCAAGCTTTT 281
||||| | ||||||||||||
Sbjct 240 TTTACAGTATTCAAGCTTTT 259
> Ahg936481 jgi|Araly1|936481|scaffold_500672.1
Length=409
Score = 222 bits (120), Expect = 5e-57
Identities = 217/263 (83%), Gaps = 10/263 (4%)
Strand=Plus/Plus
Query 25 TTTGTGTTTAGCCTTTGCATGTTTGGCCATGTAT-C-GAGAGCAAGAATCAGGATCGCGA 82
||||| |||||| |||||||| | | |||||||| | | | || || | |||||| |||
Sbjct 3 TTTGTTTTTAGCATTTGCATGCTAGACCATGTATCCGGCG-GC-GGATTTAGGATCTCGA 60
Query 83 ACGAGCTCAAATTCAAGAAAAACCTCTGGATGAGGTGTTATTCTAAAGATGATGTATTAG 142
|||| |||||| ||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 61 ACGAACTCAAAAACAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAG 120
Query 143 GTCCACATATAATACCAATCGGAGGACATTTTCTAGATTATTTT-GGCACT-AACTTTTG 200
||||| | ||||||||||||||| ||||| | | | | |||| | | | ||||||||
Sbjct 121 GTCCAAACATAATACCAATCGGACAACATTAT-GAAAATCTTTTCGATA-TAAACTTTTG 178
Query 201 GGGTACCACCCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATATACACTATCA-AA 259
| ||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 179 GCATACAACGCGTTTTATGTGTACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAA 238
Query 260 GCTTTACGGCATTCAAGCTTTTC 282
|||||| |||||||||||||||
Sbjct 239 -CTTTACAGCATTCAAGCTTTTC 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5