BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08590.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1 1790 0.0
Ahg315436 jgi|Araly1|315436|fgenesh1_pm.C_scaffold_2000469 713 0.0
Ahg338526 jgi|Araly1|338526|fgenesh1_pg.C_scaffold_2000625 503 2e-141
Ahg908084 jgi|Araly1|908084|Al_scaffold_0002_1165 405 5e-112
Ahg908083 jgi|Araly1|908083|Al_scaffold_0002_1164 399 2e-110
> Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1
Length=1524
Score = 1790 bits (969), Expect = 0.0
Identities = 1372/1555 (88%), Gaps = 74/1555 (5%)
Strand=Plus/Plus
Query 32 TCGAAATGACGCGTGTCAACCAGCTT-C---C-A-TGCGACTGTGTATCTACGGCGGAGG 85
|||||||| |||||| |||||||||| | | | ||||| ||||||| ||| ||||||
Sbjct 1 TCGAAATGGCGCGTGACAACCAGCTTCCAGGCGACGGCGACGGTGTATCCACGCCGGAGG 60
Query 86 AATCTCTCACTT-CCGGCACGTGC-ATTACCCCTACGCACGTGACTTCCCTTTC--GT-C 140
|||| ||||||| || |||||||| | ||||||| |||||||||| | | |||| | |
Sbjct 61 AATCCCTCACTTACC-GCACGTGCGA-TACCCCTTCGCACGTGACCTGCGTTTCATCTCC 118
Query 141 TCCTCTTGATCGCTCCGGCGATGTTGATCCTCTTCCTGTTT----C--C----G--ACGA 188
||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 119 TCCTCTTGATCGCTCCGGCGATGTTGATCCTCTTCCTGTTTCCGGCATCGGGGGACACGA 178
Query 189 ATCTGGTGGCTCGAAGGCCGATGAATCTATGACTGACGCAGATGAGACTAAAAAGAGGAA 248
|||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 179 ATCTGGTGGCTCAAAGGCCGATGAGTCTATGATTGACACAGATGAGACTAAAAAGAGGAA 238
Query 249 ACGGATACTCAGTGGTGATTGTGAAGCCGATGAGAATAATAAGAGTGACGGAGAAATCGC 308
|||| |||||| ||| || || | | || |||||||||||||||||| |
Sbjct 239 ACGGTTACTCA---GTG---GT------GA-G-G---AA-AAGAGTGACGGAGAAATCAC 280
Query 309 GAGTCTCAATGACGGTGTTGATG-CGTTTACTGCGATTTGTGAAGACTTGAATTGTTCTC 367
||||||| ||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 281 GAGTCTCGATGACCGTGTTGATGTC-TTCGCTGCGATTTGTGAAGACTTGAATTGTTCTT 339
Query 368 TGTGTAATCAATTGCCTGATAGGCCCGTCACGATATTATGTGGACATAACTTTTGCTTGA 427
|||||||||||||||||||||| ||||| |||| | |||||| || ||||| ||||| |
Sbjct 340 TGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACTTCTGCTTAA 399
Query 428 AATGTTTTGACAAGTGGATTGATCAAGGGAATCAAATTTGTGCTACATGTCGTAGCACAA 487
|||||||||| ||||||||||||| ||||||| ||| ||||| | |||||||||| |||
Sbjct 400 AATGTTTTGAGAAGTGGATTGATCGAGGGAATGAAACGTGTGCAAAATGTCGTAGCCCAA 459
Query 488 TTCCTGACAAAATGGCTGCCAATCCTCGTGTTAACTCGTCTCTTGTGTCTGTTATCCGTT 547
|||| || | |||||| | ||||||||||||||||||||| || ||| ||||||||||||
Sbjct 460 TTCCCGATATAATGGCAGGCAATCCTCGTGTTAACTCGTCCCTCGTGCCTGTTATCCGTT 519
Query 548 ATGTAAAAGTTGCTAAAACTGCTGGTGTTGGTACTGCAAAtttttttCCTTTTACAAGCA 607
||||||||||||||||| |||||||| ||| | ||||||||||||| ||||||||||||
Sbjct 520 ATGTAAAAGTTGCTAAAGGTGCTGGTGCTGGAAATGCAAATTTTTTTTCTTTTACAAGCA 579
Query 608 ACCAAGACGGCCCAGAGAATGCCTTTAGAACCAAGCGCGCTAAAATCGGGGA-GGAGAAT 666
|||||| || ||||||||||| ||||||||||||||||| |||| | |||| || ||||
Sbjct 580 ACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGCGCGC-AAAAACTGGGAGGGCGAAT 638
Query 667 GCTGC------AAGGATATATGTTACCGTACCATTTGATCACTTTGGTCCTATACCAGCT 720
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 639 GCTGCATGTGGAAGGATATATGTTACTGTACCATTTGATCACTTTGGTCCTATACCAGCT 698
Query 721 GAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGGAGAATCCTGGGAGAATCGAGTA 780
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 699 GAAAATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGGAGAATCCTGGAAGGATCGAGTC 758
Query 781 GAGTGTCGGCAGTGGGGGGTTCACTTGC-CACATGTTTCTTGCATTGCTGGACAAGAAGA 839
|| |||||||||||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct 759 GAATGTCGGCAGTGGGGGGCTCACTT-CGCACATGTTTCTTGCATTGCTGGACAATCAGA 817
Query 840 CTATGGAGCTCAGTCTGTAGTAATATCTGGAGGTTATAAGGATGACGAGGATCATGGAGA 899
||| |||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 818 CTACGGAGCTCAATCTGTAGCAATCTCTGGAGGTTATAAGGATGACGTGGATCATGGAGA 877
Query 900 ATGGTTTCTATACACAGGAAGGAGTAGAGGGAGACATTTCGCTAACGAGGATCAGGAGTT 959
||||||||||| |||||||||| | || ||||| ||||| ||||||||||||||||||
Sbjct 878 ATGGTTTCTATTCACAGGAAGG-G--GAAGGAGAAATTTCAATAACGAGGATCAGGAGTT 934
Query 960 TGAAGACTTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGT 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 TGAAGAATTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGT 994
Query 1020 CAGGTCTTACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGG 1079
||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 995 CAGGTCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGG 1054
Query 1080 TGTATACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATTTAAGGTCTG 1139
||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1055 TGTCTACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCAGGATTCCTGTAAGGTCTG 1114
Query 1140 TCGTTACCTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAGTGG 1199
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1115 TCGTTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGG 1174
Query 1200 AGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACGGCCTCAGACCTGTTTGA 1259
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1175 AGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACTGCCACAGACCTGTTTGA 1234
Query 1260 GAGAAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGGATGAA 1319
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1235 GAGAAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGAGATGGATGAA 1294
Query 1320 GCCTCCACCTGCAAATCATGAGCAGAGGGAGAGAATGAAGATGGCTATGACATGTCTTCT 1379
|||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 1295 GCCTCCACCTGCTAATCATGAGCAGAGGAAGAGAATGAGGATCGCTATGACATGTCTTCT 1354
Query 1380 CCTTTTTGTCCTTATCATTCTCGTTGGTTCATCATCTATCTTATATCAG-TATTAGAAGA 1438
|||||||||| | |||||| | ||||||||||||||||||||||| | | | ||||||||
Sbjct 1355 CCTTTTTGTCATGATCATTTTTGTTGGTTCATCATCTATCTTATACCGGGT-TTAGAAGA 1413
Query 1439 ATCACCGACAAATAACTTGTT-----GGTTTGAT---CCCTTAGTTGTCTTTCTTGTTAC 1490
||||||| ||||||||||||| |||||||| ||||||||| |||| ||||| ||
Sbjct 1414 ATCACCGGCAAATAACTTGTTCTTTTGGTTTGATGATCCCTTAGTTATCTT-CTTGT-AC 1471
Query 1491 CAA--CAGTCTTTTCTAGTTCTCTCACTACTCAAGTCTTGGAAACTTGAGGTTCT 1543
||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1472 CAAAACAGTCTTCTCTAGTTCTCTCACTACTC--GTCTTGGATACTTGAGGTTCT 1524
> Ahg315436 jgi|Araly1|315436|fgenesh1_pm.C_scaffold_2000469
Length=1950
Score = 713 bits (386), Expect = 0.0
Identities = 826/1029 (80%), Gaps = 67/1029 (7%)
Strand=Plus/Plus
Query 353 ACTTGAAT-TGTTCTCTGTGTAAT-CAATTGCCTGATAGGCCCGTCACGATATTATGTGG 410
||||| || |||||| | ||| || ||||||||||| || || || |||| | ||||||
Sbjct 419 ACTTG-ATGTGTTCTTTCTGT-ATGCAATTGCCTGAGAGACCTGTGACGAAACCATGTGG 476
Query 411 ACATAACTTTTGCTTGAAATGTTTTGACAAGTGGATTGATCAAGGG-AATCAAATTTGTG 469
|| ||| |||||||||||||||||| |||||||| | | |||| || | || |||||
Sbjct 477 GCACAACGCTTGCTTGAAATGTTTTGAGAAGTGGATGGGGC-AGGGCAAGCGAACTTGTG 535
Query 470 CTACATGTCGTAGCACAATTCCTGACAAAATGGCTGCCAATCCTCGTGTTAACTCGTCTC 529
|| ||| || ||| |||||| || ||||||||| ||||| ||| | |||||||| |
Sbjct 536 GTAAATGCCGAAGCGTAATTCCGGAGAAAATGGCTAAGAATCCCCGTATCAACTCGTCCC 595
Query 530 TTGTGTCTGTTATCCG-TTATGTAAAAGT-TGCTAAAACTGCTGGTGTTGGTACTGCAAA 587
||||||||| ||| | ||| | ||||| | |||||| ||||| || |||||| ||||
Sbjct 596 TTGTGTCTGCTATTAGATTA-GCGAAAGTAT-CTAAAAGTGCTGCTGCGGGTACTTCAAA 653
Query 588 tttttttCCTTTTACAAGCAACCAAGACGGCCCAGAGAATGCCTTTAGAACCAAGCGCGC 647
| |||| ||| | |||||| |||||| | ||||| || || |||| ||| |||| ||
Sbjct 654 GGTCTTTCATTTCATAAGCAATCAAGACCGACCAGATAAAGCATTTACAACTGAGCGTGC 713
Query 648 -TA-AAATC-GGGGAGGAGAA---TGC---TGCAAGGATATATGTTACCGTACCATTTGA 698
| ||| | ||| ||| ||| ||| || |||||| |||||||| ||||| ||
Sbjct 714 AAAGAAAACTGGGAAGGCGAACGCTGCTAGTGGAAGGATTTATGTTACAATACCACCAGA 773
Query 699 TCACTTTGGTCCTATACCAGCTGAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGG 758
||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||
Sbjct 774 TCACTTTGGTCCTATACCAGCTGAAAACGATCCTGTCAGGAACCAAGGTCTTTTGGTTGG 833
Query 759 AGAATCCTGGG-AGAATC-GAGTAGAGTGTCGGCAGTGGGGGGTTCACTTGCCACATGTT 816
||||||||||| || | | || | |||||| |||||||||||| |||||| |||||||||
Sbjct 834 AGAATCCTGGGAAG-A-CAGACTCGAGTGTAGGCAGTGGGGGGCTCACTTCCCACATGTT 891
Query 817 TCTTGCATTGCTGGACAA-GAAGACTATGGAGCTCAGTCTGTAGTAATATCTGGAGGTTA 875
|| |||||||||||||| || | ||||||||||| ||||||| | | |||||||||||
Sbjct 892 GCTGGCATTGCTGGACAATCAA-ATTATGGAGCTCAATCTGTAGCACTCTCTGGAGGTTA 950
Query 876 TAAGGATGACGAGGATCATGGAGAATGGTTTCTATACACAGGAAG-GAGT-A-GAGGG-- 930
| ||||||| ||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 951 TGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGGGAAGAGATCT 1010
Query 931 -AG----A-CATTTCG-CTAACGAGGATCAGGAGTTTGA--AGAC-TT-GAATGAAGCTT 979
|| | || | |||| |||| ||| ||||| | | || ||| ||| |
Sbjct 1011 CAGTGGCAACAAAAGGACTAATAAGGAGCAGTCCTTTGATCAAAAATTTGAA--AAG-TC 1067
Query 980 TAA-GA-G--TTA-G--TT-GC-G-AAA-TGGGGTATCCAGTTCGAGTTGTCAGGTCTTA 1028
||| || | ||| | || || | ||| |||||||||| |||||||||||||||||| |
Sbjct 1068 TAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTCAGGTCTCA 1127
Query 1029 CAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGGTGTATACAG 1088
|||||| | | |||||||||||||||| |||| ||||||||||||||||| || ||| |
Sbjct 1128 CAAGGAGAAGCGTTCTGCATATGCCCCTGAGGAGGGAGTGAGATATGATGGGGTGTACCG 1187
Query 1089 GATCGAGAAATGCTGGCGAAAAGCTAG-ATTCCCGGATTCATTT-AAGGTCTGTCGTTAC 1146
||||||||| |||||||| |||| | | || | || ||| ||| |||||||||||||||
Sbjct 1188 GATCGAGAAGTGCTGGCGGAAAGTTGGTATACAGGG-TTC-TTTCAAGGTCTGTCGTTAC 1245
Query 1147 CTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAAC-AGTGATGAG-AGTGGAGATC 1204
|||||||| |||||||| ||||||||||||||||||| | ||||||||| | ||||||||
Sbjct 1246 CTGTTTGTTAGATGTGATAATGAGCCAGCTCCATGGA-CTAGTGATGAGCA-TGGAGATC 1303
Query 1205 GTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAA-ACGGCCTCAGACCTGTTTGAGAGA 1263
| ||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 1304 GCCCAAGACCTTTGCCTAATATTCCAGAGCT-GAATATGGCCACAGACCTGTTTGAGAGA 1362
Query 1264 AAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGC-CGTTGGAGATGGATGAAGCC 1322
|| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1363 AAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTTC-TTGGAGATGGATGAAGCC 1421
Query 1323 TCCACCTGC 1331
||||||||
Sbjct 1422 GCCACCTGC 1430
> Ahg338526 jgi|Araly1|338526|fgenesh1_pg.C_scaffold_2000625
Length=1971
Score = 503 bits (272), Expect = 2e-141
Identities = 551/677 (81%), Gaps = 54/677 (8%)
Strand=Plus/Plus
Query 697 GATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTT 756
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 772 GATCACTTTGGTCCTATACCAGCTGAACATGATCCTGTTAGGAACCAAGGTGTTTTGGTT 831
Query 757 GGAGAATCCTGGGAGAATCGAG-TA-GAGTGTCGGCAGTGGGGGGTTCACTTGCCACATG 814
|||||||||||| || ||| || | | ||||||||||||||||||||| |||| ||
Sbjct 832 GGAGAATCCTGGAAGGGCCGACATACG-GC-TCGGCAGTGGGGGGTTCACTTCCCACTTG 889
Query 815 TTTCTTGCATTGCTGGACAAGA-AGACTATGGAGCTCAGTCTGTAGTAATATCTGGAGGT 873
||||| ||||||||||||||| || ||||||||||| ||||| || | ||||||||
Sbjct 890 TTTCTGGCATTGCTGGACAAGCTAGT-TATGGAGCTCAATCTGTTGTGCTCGCTGGAGGT 948
Query 874 TATAAGGATGACGAGGATCATGGAGAATGGTTTCTATACACAGGAAG-GAGTAGAGGGAG 932
||| ||||||| ||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 949 TATGAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGGG-GAAG-AG 1006
Query 933 A-C--ATT--TCGCTAACG-A-GGA-T--CAG-G---AG--TTT-GA--AGAC-TT-GAA 971
| | | | |||| ||| | ||| | ||| | || ||| || | | || |||
Sbjct 1007 ATCTCAGTACTCGC-AACTTAAGGACTAACAGCGTTCAGGGTTTTGATCAAAAATTTGAA 1065
Query 972 TGAAGCTTTAA-GA-G--TTA-G--TT-GC-G-AAA-TGGGGTATCCAGTTCGAGTTGTC 1020
||| | ||| || | ||| | || || | ||| |||||||||| ||||||||||||
Sbjct 1066 --AAG-TCTAATGAAGCCTTAAGACTTAGCTGCAAACTGGGGTATCCTGTTCGAGTTGTC 1122
Query 1021 AGGTCTTACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTG--A-GATATGAT 1077
||||||| |||||| | | |||||||||| |||||| ||| || | | | | ||||||
Sbjct 1123 AGGTCTTCCAAGGACATGCATTCTGCATACGCCCCTGAGGGAGAATTACTAAGGTATGAT 1182
Query 1078 GGTGTATACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATT-TAAGGT 1136
|| || ||| | ||||||||||| ||| |||| | || | | || ||| || ||||||
Sbjct 1183 GGGGTTTACCGCATCGAGAAATGTTGGATCAAAGTTGGAGTACAGGGTTC-TTATAAGGT 1241
Query 1137 CTGTCGTTACCTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAG-A 1195
|||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1242 CTGTCGTTTCCTGTTTATTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCA 1301
Query 1196 GTGGAGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAA-ACGGCCTCAGACCTG 1254
||||||||| |||||||||||||||||| |||| |||||| || | |||| || ||||
Sbjct 1302 -TGGAGATCGCCCAAGACCTTTGCCTAATGTTCCGGAGCTT-AATATGGCCACAAACCTA 1359
Query 1255 TTTGAGAGAAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGG 1314
||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1360 TTTGAGAGAAAAGAAAGTCCATCATGGGATTTTGATGAAGGTGAGGGTCGTTGGCGATGG 1419
Query 1315 ATGAAGCCTCCACCTGC 1331
|||||||| ||||||||
Sbjct 1420 ATGAAGCCGCCACCTGC 1436
> Ahg908084 jgi|Araly1|908084|Al_scaffold_0002_1165
Length=1869
Score = 405 bits (219), Expect = 5e-112
Identities = 320/368 (87%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 968 TGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAGGTCTT 1027
||||||||||| ||||| |||||||| ||||||| ||||| || |||||||||||||||
Sbjct 1034 TGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTC 1093
Query 1028 ACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGGTGTATACA 1087
||||||| | | ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1094 ACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCTACC 1153
Query 1088 GGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATT-TAAGGTCTGTCGTTAC 1146
| |||||||| |||||| | || | | || | | || ||| || ||||||||||||||||
Sbjct 1154 GAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTC-TTATAAGGTCTGTCGTTAC 1212
Query 1147 CTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAG-AGTGGAGATCG 1205
||||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||
Sbjct 1213 TTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCA-TGGCGATCG 1271
Query 1206 TCCAAGACCTTTGCCTAATATTCCAGAGCTT--GAAACGGCCT-CAGACCTGTTTGAGAG 1262
||||||||||||||||||||||||||||||| |||| | | | | |||||||||| |||
Sbjct 1272 TCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAA-G-C-TACTGACCTGTTTGTGAG 1328
Query 1263 AAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGGATGAAGCC 1322
|||||| ||||||||||||||||| |||||||| ||||| ||||||| |||||||||| |
Sbjct 1329 AAAGGATAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTC 1388
Query 1323 TCCACCTG 1330
||||||||
Sbjct 1389 TCCACCTG 1396
> Ahg908083 jgi|Araly1|908083|Al_scaffold_0002_1164
Length=1857
Score = 399 bits (216), Expect = 2e-110
Identities = 319/368 (87%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 968 TGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAGGTCTT 1027
||||||||||| ||||| |||||||| ||||||| ||||| || |||||||||||||||
Sbjct 1028 TGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTC 1087
Query 1028 ACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGGTGTATACA 1087
||||||| | | ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1088 ACAAGGAGAAGCGTTCTGCATATGCCCCTAAGGAAGGAGTGAGATACGATGGGGTCTACC 1147
Query 1088 GGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATT-TAAGGTCTGTCGTTAC 1146
| |||||||| |||||| | || | | || | | || ||| || ||||||||||||||||
Sbjct 1148 GAATCGAGAAGTGCTGGAGCAACGTTGGAATACAGGGTTC-TTATAAGGTCTGTCGTTAC 1206
Query 1147 CTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAG-AGTGGAGATCG 1205
|| ||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||
Sbjct 1207 CTATTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCA-TGGCGATCG 1265
Query 1206 TCCAAGACCTTTGCCTAATATTCCAGAGCTT--GAAACGGCCT-CAGACCTGTTTGAGAG 1262
||||||||||||||||||||||||||||||| |||| | | | | |||||||||| |||
Sbjct 1266 TCCAAGACCTTTGCCTAATATTCCAGAGCTTAAGAAA-G-C-TACTGACCTGTTTGTGAG 1322
Query 1263 AAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGGATGAAGCC 1322
|||||| ||||| ||||||||||| |||||||| ||||| ||||||| |||||||||| |
Sbjct 1323 AAAGGATAGTCCGTCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTC 1382
Query 1323 TCCACCTG 1330
||||||||
Sbjct 1383 TCCACCTG 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5