BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08596.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480300 jgi|Araly1|480300|fgenesh2_kg.3__3001__AT1G42570.1 2202 0.0
Ahg949393 jgi|Araly1|949393|scaffold_801280.1 379 4e-104
Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175 281 1e-74
> Ahg480300 jgi|Araly1|480300|fgenesh2_kg.3__3001__AT1G42570.1
Length=1605
Score = 2202 bits (1192), Expect = 0.0
Identities = 1488/1627 (91%), Gaps = 36/1627 (2%)
Strand=Plus/Plus
Query 363 CCAATCACTCGGTGTGGTTGTAATGCTCATATGACTTGCTACCTTCAGAAGACCGGAAAA 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CCAATCACACGGTGTGGTTGTAATGCTCATATGACTTGCTACCTTCAGAAGACCGGAAAA 63
Query 423 TATAAGCTTGTATCTTTCGAGCC-GAACCACAACCATGATTTAGTG-AGAACACCTATGA 480
|||||| |||| |||||| | || ||| || ||||||||||||||| || || |||||||
Sbjct 64 TATAAGGTTGTGTCTTTC-AACCAGAATCATAACCATGATTTAGTGAAG-ACGCCTATGA 121
Query 481 AGCATTTGTTGAAGGGAAATCAGGAATTATCTATCTGTCAAAAACAACATGTAGATGATG 540
| ||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 122 AACATTTGTTGAAGGGAAATCGGGTATTATCTATCTCTCAAAAACAACATGCAGATGATG 181
Query 541 CTGAGATGTCAGGGATTTCAGCAAAAGCAACTGTTGAAATGATGAGTAGAGAAGTTGGGG 600
| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 182 CCGAGATGTCAGGAATTTCAGCAAAATCAACTGTTGAAATGATGAGTAGAGAAGTAGGAG 241
Query 601 GGCAAGAAAATCTGGGTTTTTTGAAGAAAGATTATCAAAATTACATATACCGAAAGAGAA 660
|| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 242 GGTAAGTAAATCTGGGTTTTTTGAAGAAGGATTATCAAAATTACATATACCGAAAGCGAA 301
Query 661 TGGCAAAAATGGAAAAGGGAGATGGTGCAGCTGTTTTGGAATACTTTCAGaaaaaaaaaG 720
|||||||||||||||||||||||| || |||||||||||| ||||||||| ||
Sbjct 302 TGGCAAAAATGGAAAAGGGAGATGTTGGAGCTGTTTTGGAGTACTTTCAG-------AA- 353
Query 721 AGGGTAATTCGTCtttttttATTCAATGCAACTTGATGAGGATGATATGATCACTAATAT 780
| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 A----AA----T-TTTTTTTATTCAATGCAACTTGATGAGGATGATATGATCACTAATAT 404
Query 781 ATTCTGGGCAGATGATCGGTCTATCAGTGATTACAATCTTTTTGGAGATGTCATTTGCTT 840
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 405 CTTCTGGGCAGATGATCGGTCTATAAGTGATTACAATCTTTTTGGAGATGTCGTTTGCTT 464
Query 841 TGACACAACTTATAAGACCAATGAATATGATAGACCCTTTGTTCCATTTGTCGGGGTCAA 900
|||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||
Sbjct 465 TGACACAACTTATAAGACCAATGACTATGAAAGACCCTTTGCTCCATTTGTCGGAGTCAA 524
Query 901 TCATCACAAGCAAACAGTTGTGTTTGGTGTTGCTCTCTTATATGATAAAACCAAC-GAGT 959
|||||| |||||||| ||||||||||||| |||||||||||||||| ||||| || ||||
Sbjct 525 TCATCATAAGCAAACTGTTGTGTTTGGTGCTGCTCTCTTATATGATGAAACC-ACTGAGT 583
Query 960 CATATAAGTGGCTTTTCGAGACTTTTCTTGGAGTAATGTATGGAAAACAACCAAAAAACA 1019
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 584 CATATAAGTGGCTTTTCGAGACTTTTCTTGGAGCAATGTCTGGAAAACAACC-TGAAACA 642
Query 1020 ATTCTTACAGACCAATGTGCAGCAATGGCGAATGCGATAGTAAAGGTATTCCCTGATACA 1079
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 643 ATTCTTACAGACCAATGTGCAGCAATGGCGAATGCAATAGTGAAGGTATTTCCTGATACA 702
Query 1080 AA-TATAGATTATGTGTTTGGCATATTTACCAAAATGCTGCAAAGAAGTTGAGTCATGTA 1138
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AAGCATAGATTATGTGTTTGGCATATTTACCAAAATGCTGCAAAGAAGTTGAGTCATGTA 762
Query 1139 TTTCATGGAGCAGAACAATTTGCCATGGATTTTAGTAAGTGTGTATATGACTATGAGGAA 1198
||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||
Sbjct 763 TTTCATGGAGCAGAACAATTTGCCATGAACTTTAGTAAATGTGTATATGACCATGAGGAA 822
Query 1199 GAAGAAGATTGGTTATTAGCATGGAGTAATATGCTCCAGAAGCATAACTTGATAGAGGAT 1258
|||||||| |||||||| ||||||||||||||||||||| ||||||| |||| | ||||
Sbjct 823 GAAGAAGAATGGTTATTGGCATGGAGTAATATGCTCCAGTAGCATAAATTGACGGGGGAT 882
Query 1259 AAATGGTTGAAGAATTTGTTTGAGCTGAGAGAAAAATGGGCAATGGTATATGAACGTCAT 1318
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 AAATGGTTGAAGAATTTATTTGAGCTGAGAGAAAAATGGGCAATGGTATATGGACGTCAT 942
Query 1319 TCTTTTACAGCAGATATGGTGAGCACACAACGTAGTGAAAGTATGAATAATATTTTGAAA 1378
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 943 ACTTTTACAGCAGATATGGTGAGCACACAGCGTAGTGAAAGTATGAATAATATTTTGAAA 1002
Query 1379 AA--TACTTGAAGCATAGTTATAACTTGTTGTGCTTCTTTGAACACTACGAGAAAGTGTT 1436
|| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1003 AAAATACTTGAAGCATAGTTATAACTTGTTGTGCTTCTTTGAACACTATGAGAGAGTGTT 1062
Query 1437 GGAGGATCGACGATATAAGGAATTAGTTGCTGATTTCAATATGATGCATACCTTGCCGGT 1496
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1063 GGAGGATCAACGATATAAAGAATTAGTTGCTGACTTCAATATGATGCATACCTCGCCGGT 1122
Query 1497 ATTATGTGCTACTGTAG-GATGTTGCAATATGCGGAGGAAGTGTATACACTCAAAA-TTT 1554
||||||||||||||||| |||||||||| |||| |||||||||||||||| || || |||
Sbjct 1123 ATTATGTGCTACTGTAGAGATGTTGCAACATGCAGAGGAAGTGTATACAC-CAGAAGTTT 1181
Query 1555 TTAGCTTGTTCCAGAAACAATACATAGTTATTGGTGATTATGTTGCCAACAAGGTTAGTA 1614
|||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 1182 TTAGCTTGTTCCAGAAGCAATTCATAGTTATCGGTGATTATGTTGCCAAAAAGGTTAGTA 1241
Query 1615 AGTATGAGATGGTATATGAATATAAAT-TACCTTATCGTGGTGTAGCACG-GAAGCATTT 1672
||| ||||||||| |||||||| || | || ||||||| ||||||||||| || ||||||
Sbjct 1242 AGTCTGAGATGGTGTATGAATACAA-TGTATCTTATCGAGGTGTAGCACGAGA-GCATTT 1299
Query 1673 TATTAATTATGATGTTGCAAACGAGACGATACGTTGCAGTTGCATGAACTTTAGTTTTGC 1732
|||||||||||| |||||||||||| |||| ||| |||||| ||| ||| ||||||
Sbjct 1300 GGTTAATTATGATGCTGCAAACGAGACAATACATTGTGGTTGCAAGAAGTTTTCTTTTGC 1359
Query 1733 CGGGATTTTATGTCGTCATGCATTGAAAGTGCTGGACAAGAAAAATGTTAGAAAAATCCC 1792
|||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| ||
Sbjct 1360 TGGGATTTTATGTCGTCATGCATTGAAAGTGTTGGACAAGAAGAATGTTAGAAGAATTCC 1419
Query 1793 ATCTAACT-ACATTCTAAATCGATGGAGTAAAGAGGCAAAAGCACGAAAAACAttttttt 1851
||||| || |||||||||||||||||||||||||||||||||||||||| | || || ||
Sbjct 1420 ATCTA-CTTACATTCTAAATCGATGGAGTAAAGAGGCAAAAGCACGAAACATATCTTATT 1478
Query 1852 ATCATTCAGAGCCACCTAATGAAACAGTCAAGGAATCGATTGGAAAGCGATATAGCCATA 1911
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1479 ATCATTCAGAGTCACCTAATGAAACAGTCAAGCAATCGATTGGAAAGCGATATAGCCATA 1538
Query 1912 TATGTCGTACTTTCCGTGAGATTGCATCTGTTGCTACTGATCATATAGAATTGACGTTGT 1971
|||||| |||||||||||||||||||| ||||||| |||||||||||||| |||| ||||
Sbjct 1539 TATGTCATACTTTCCGTGAGATTGCATATGTTGCTGCTGATCATATAGAAATGACATTGT 1598
Query 1972 GTGCAAA 1978
|||||||
Sbjct 1599 GTGCAAA 1605
> Ahg949393 jgi|Araly1|949393|scaffold_801280.1
Length=586
Score = 379 bits (205), Expect = 4e-104
Identities = 321/375 (86%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 52 TCAATAAGTGAAAACGAAGTTTCGGCCAATGAATTTGAAGAAGAAGATAAAATAGCTATC 111
|||||||||||| |||||| ||| | | ||||||||||||||||||| | ||||| | |
Sbjct 120 TCAATAAGTGAAGACGAAGCTTCAGTTAGTGAATTTGAAGAAGAAGATGACATAGCCAAC 179
Query 112 ---CACGA--A-G-----A-TGAAGAGGTTGCTGCTTTAGAAGCAAATAATGAT-AATGA 158
|||| | | | ||||||||||| ||||||||||| ||| || | | |||||
Sbjct 180 AAAGACGATTATGTTCAAACTGAAGAGGTTGTTGCTTTAGAAGAAAACAAAG-TGAATGA 238
Query 159 GAAGAAAGATAAAATATATATTGGAATGGAGTGCGGTTCTGATGAGATTGCATATATAAC 218
||| |||||| || ||| |||||||||||||| ||||||||||| |||||||||| |
Sbjct 239 GAAAAAAGATGAACTATGTATTGGAATGGAGTTTAGTTCTGATGAGGCTGCATATATAGC 298
Query 219 TTATAAAAAGTATGGAGGCAATCATGGTTTCAATATAAGAAAACAACGGAGGATGaaaaa 278
|||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 299 TTATAAGCAGTATGGAGGCAATCATGGTTTCAACGTAAGGAAACAACGGAGGACGAAAAA 358
Query 279 a-aCGGGAAGGTAGTAAGGCTTCTTTATGTTTGCTCAAAACAAGGGTATAGGAAAGAACC 337
| | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 359 ACAAGAGAAGGTAGTAAGGCTTCTTTATGTCTGCTCAAAACAGGGGTATAGGAAAGAACC 418
Query 338 CAAGGTCATAAAATCATAATCACAACCAATCACTCGGTGTGGTTGTAATGCTCATATGAC 397
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TAAGGTCATAAAATCTTATTCACAACCAATCACACGGTGTGGTTGTAATGCTCATATGAC 478
Query 398 TTGCTACCTTCAGAA 412
|||||||||||||||
Sbjct 479 TTGCTACCTTCAGAA 493
> Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175
Length=276
Score = 281 bits (152), Expect = 1e-74
Identities = 224/257 (87%), Gaps = 12/257 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGTAATCATATAAGTGAAGATTTTTTAGTCGAAGAAAAAGATGACTCAATAAGT 60
|||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGAGAGTAGTCATATAAGTGAAGACTTTTTAGTCGAGGAAGAAGATGACTCAATAAGT 60
Query 61 GAAAACGAAGTTTCGGCCAATGAATTTGAAGAAGAAGATAAAATAGCTATCCACGA--A- 117
||| |||||| ||||| |||||||||||||||||||||| ||||||| | | |||| |
Sbjct 61 GAAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCCAACAACGAGGAT 120
Query 118 G--------A-TGAAGAGGTTGCTGCTTTAGAAGCAAATAATGATAATGAGAAGAAAGAT 168
| | |||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 121 GACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAATCATAAGAAAGAT 180
Query 169 AAAATATATATTGGAATGGAGTGCGGTTCTGATGAGATTGCATATATAACTTATAAAAAG 228
|||||||| |||| ||||||| | |||| |||||||||||| |||||||||||||||||
Sbjct 181 GAAATATATGTTGGTATGGAGTTCAGTTCCGATGAGATTGCACATATAACTTATAAAAAG 240
Query 229 TATGGAGGCAATCATGG 245
|||||||||||||||||
Sbjct 241 TATGGAGGCAATCATGG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5