BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08598.1

Length=1963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935848 jgi|Araly1|935848|scaffold_500039.1                        261    1e-68
  Ahg481446 jgi|Araly1|481446|fgenesh2_kg.4__506__AT4G05505.1          250    3e-65
  Ahg497075 jgi|Araly1|497075|fgenesh2_kg.9__40__AT4G05505.1           244    1e-63
  Ahg484611 jgi|Araly1|484611|fgenesh2_kg.5__603__AT4G05505.1          132    1e-29
  Ahg900193 jgi|Araly1|900193|Al_scaffold_0004_843                    73.1    7e-12


> Ahg935848 jgi|Araly1|935848|scaffold_500039.1
Length=745

 Score =  261 bits (141),  Expect = 1e-68
 Identities = 200/228 (88%), Gaps = 5/228 (2%)
 Strand=Plus/Plus

Query  1    CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG  59
            |||||||| || || ||||||||| || |||||||| || |||||||||||  |||| | 
Sbjct  147  CCCAGCCATTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC  204

Query  60   AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC  118
            || | |||||||||||  |||| |||||| | ||  |||| |||||||||||||||||||
Sbjct  205  AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC  264

Query  119  AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT  178
            |||||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||
Sbjct  265  AACTTTTCCAGTCAGGTGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT  324

Query  179  CCGGATCGACTCAACCTAGATTTGGAGGATCTGTTCATCGTCTA-CCT  225
            ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  325  CCGGATCGACTCAACCTAGATCTGGAGGATCTGTTCATCGTCTAGCCT  372


> Ahg481446 jgi|Araly1|481446|fgenesh2_kg.4__506__AT4G05505.1
Length=2055

 Score =  250 bits (135),  Expect = 3e-65
 Identities = 187/212 (88%), Gaps = 4/212 (2%)
 Strand=Plus/Plus

Query  1    CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG  59
            ||||||||||| || ||||||||| || |||||||| || |||||||||||  |||| | 
Sbjct  127  CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC  184

Query  60   AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC  118
            || | |||||||||||  |||| |||||| | ||  |||| |||||||||||||||||||
Sbjct  185  AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC  244

Query  119  AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT  178
            |||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct  245  AACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT  304

Query  179  CCGGATCGACTCAACCTAGATTTGGAGGATCT  210
            ||||||||||||||||||||| ||||||||||
Sbjct  305  CCGGATCGACTCAACCTAGATCTGGAGGATCT  336


> Ahg497075 jgi|Araly1|497075|fgenesh2_kg.9__40__AT4G05505.1
Length=2060

 Score =  244 bits (132),  Expect = 1e-63
 Identities = 186/212 (88%), Gaps = 4/212 (2%)
 Strand=Plus/Plus

Query  1    CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG  59
            ||||||||||| || ||||||||| || |||||||| || |||||||||||  |||| | 
Sbjct  133  CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC  190

Query  60   AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC  118
            || | |||||||||||  |||| |||||| | ||  |||| |||||||||||||||||||
Sbjct  191  AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC  250

Query  119  AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT  178
            |||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct  251  AACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT  310

Query  179  CCGGATCGACTCAACCTAGATTTGGAGGATCT  210
            | ||||||||||||||||||| ||||||||||
Sbjct  311  CTGGATCGACTCAACCTAGATCTGGAGGATCT  342


> Ahg484611 jgi|Araly1|484611|fgenesh2_kg.5__603__AT4G05505.1
Length=2008

 Score =  132 bits (71),  Expect = 1e-29
 Identities = 113/133 (85%), Gaps = 4/133 (3%)
 Strand=Plus/Plus

Query  1    CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG  59
            ||||||||||| || ||||||||| || |||||||| || |||||||||||  |||| | 
Sbjct  118  CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC  175

Query  60   AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC  118
            || | |||||||||||  |||| |||||| | ||  |||| |||||||||||||||||||
Sbjct  176  AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC  235

Query  119  AACTTTTCCAATC  131
            |||||||||||||
Sbjct  236  AACTTTTCCAATC  248


> Ahg900193 jgi|Araly1|900193|Al_scaffold_0004_843
Length=612

 Score = 73.1 bits (39),  Expect = 7e-12
 Identities = 49/54 (91%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  139  GGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCATCCGGATCGACTCAA  192
            ||||||||| | || || ||||||| ||||||||||||||||||||||||||||
Sbjct  217  GGATCTCCTCGAGGCTCCGGATCGAATCCATTTCGAGCATCCGGATCGACTCAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73780804565


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5