BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08620.1
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942653 jgi|Araly1|942653|scaffold_603197.1 2944 0.0
> Ahg942653 jgi|Araly1|942653|scaffold_603197.1
Length=1985
Score = 2944 bits (1594), Expect = 0.0
Identities = 1854/1981 (94%), Gaps = 12/1981 (1%)
Strand=Plus/Plus
Query 68 TTTCAGCAATCATGTCCGGGACTATTAATCCCCCGGACGGAGGAGGGTCCGGTGCAAGAA 127
||||| |||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 11 TTTCAACAATCATGTCCGGGAC--TT-AT---CCGGACGGAGGAGGGTCCGGTGCAAGAA 64
Query 128 ACCCACCAGTCGTTCGTCAGAGAGTGCTAGCTCCTCCGAAAGCGGGTTTACTAAAGGACA 187
||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 65 ACCCAGCAGAAGTTCGTCAGCGAGTGCTAGCTCCTCCGAAAGCGGGTTTGCTAAAGGACA 124
Query 188 TCAAGTCCGTGGTTGAAGAAACTTTCTTCCATGATGCTCCGCTTAGGGATTTCAAGGGCC 247
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 125 TCAAGTCGGTGGTTGAAGAAACTTTCTTCCATGATGCACCCCTTAGGGATTTCAAGGGCC 184
Query 248 AAACCCCAGCTAAAAAAGCGTTGCTCGGGATCCAGGCTGTCTTCCCGATCATCGGGTGGG 307
||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 185 AAACCCCAGCTAAGAAAGCGTTACTCGGGATCCAGGCTGTCTTCCCGATCATTGGTTGGG 244
Query 308 CCAGAGAATACACTCTTCGCAAATTTAGAGGTGATCTCATCGCCGGTCTCACCATTGCTA 367
||||||| |||| |||||||||| || |||| ||| | || |||||||||||||||||||
Sbjct 245 CCAGAGAGTACAATCTTCGCAAACTTCGAGGCGATGTAATTGCCGGTCTCACCATTGCTA 304
Query 368 GTCTTTGTATCCCTCAGGATATCGGATATGCAAAACTCGCGAATGTCGATCCGAAATACG 427
|||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||
Sbjct 305 GTCTTTGTATCCCTCAGGATATCGGATATGCAAAGCTCGCGAATTTGGATCCAAAATACG 364
Query 428 GACTTTATTCGAGTTTCGTGCCACCGCTGATTTACGCGGGCATGGGGAGTTCTAGGGATA 487
||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| ||||
Sbjct 365 GACTTTACTCGAGTTTCGTGCCACCACTGGTGTACGCGGGCATGGGGAGTTCTAGAGATA 424
Query 488 TTGCGATAGGACCAGTCGCTGTGGTGTCTCTTCTTGTGGGAACTTTGTGCCAGGCCGTGA 547
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 425 TTGCGATAGGACCAGTCGCGGTGGTGTCTCTTCTTTTGGGAACTTTGTGCCAGGCCGTCA 484
Query 548 TCGACCCAAAGAAAAACCCGGAGGATTATCTCCGACTTGTCTTCACTGCCACTTTCTTTG 607
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 485 TCGACCCAAAGAAAAACCCGGCTGATTATCTCCGACTTGCCTTCACTGCCACTTTCTTTG 544
Query 608 CTGGCATTTTCCAAGCCGGCCTCGGATTTCTACGGTTGGGATTCTTGATAGACTTTCTGT 667
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 545 CTGGCATTTTCCAAGCCGGCCTCGGTTTTCTGCGGTTGGGATTCTTGATAGACTTTCTGT 604
Query 668 CGCATGCGGCCGTGGTTGGGTTCATGGGAGGAGCAGCCATCACAATCGCTCTCCAACAGC 727
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CGCATGCTGCGGTTGTTGGGTTCATGGGAGGAGCAGCCATCACAATCGCTCTCCAACAGC 664
Query 728 TTAAGGGCTTTCTTGGCATCAAAACATTTACCAAGAAAACTGATATTGTTTCTGTCATGC 787
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 665 TTAAGGGCTTTCTTGGCATCAAGACATTTACCAAGAAAACTGATATTATTTCTGTTATGA 724
Query 788 ACTCCGTATTCAAAAACGCTGAGCATGGGTGGAATTGGCAAACTATAGTCATTGGCGCCA 847
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AGTCCGTATTCAAAAACGCTGAGCATGGGTGGAATTGGCAAACTATAGTCATTGGCGCCA 784
Query 848 GTTTCTTGACCTTTCTTCTCGTCACCAAATTCATTGGGAAGAGAAACAGGAAACTATTTT 907
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 785 GTTTCTTGACCTTTCTTCTCGTCACCAAATTCATTGGGAAGAGAAACAGGAGACTTTTTT 844
Query 908 GGGTTCCGGCAATTGCGCCTCTTATTTCAGTCATTATCTCTACCTTCTTTGTCTTCATTT 967
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GGGTTCCAGCAATTGCTCCTCTTATTTCAGTCATTATCTCTACCTTCTTTGTCTTCATAA 904
Query 968 TTCGTGCTGATAAACAAGGAGTCCAAATTGTGAAACATATAGATCAAGGAATCAATCCGA 1027
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CTCGTGCTGACAAACAAGGAGTCCAAATTGTGAAACATATAGATCAAGGAATCAATCCGA 964
Query 1028 TTTCCGTTCATAAGATTTTCTTCTCCGGAAAATATTTCACCGAAGGAATCCGAATCGGAG 1087
| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 965 TATCCGCTCATAAGATTTTCTTCTCCGGAAAATATTTGACCGAAGGAATCCGAATTGGAG 1024
Query 1088 GCATTGCGGGTATGGTCGCCTTAACGGAGGCTGTAGCGATTGCAAGAACATTTGCGGCAA 1147
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1025 GCATTGCTGGTATGGTCGCTTTAACGGAAGCTGTAGCGATTGCAAGAACATTTGCAGCAA 1084
Query 1148 TGAAAGACTATCAAATTGATGGAAACAAAGAGATGATTGCCCTAGGGA-CTATGAACGTC 1206
|||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1085 TGAAAGACTATCAAATCGATGGAAACAAAGAGATGATTGCTTT-GGGAACTATGAACGTT 1143
Query 1207 GTCGGTTCAATGACCTCTTGTTACATTGCCACGGGTTCGTTTTCGCGATCTGCCGTGAAC 1266
|| |||||| | || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1144 GTTGGTTCACTCACTTCTTGTTACATTGCCACGGGTTCGTTTTCACGATCTGCCGTGAAC 1203
Query 1267 TTCATGGCGGGAGTCGAAACGGCGGTTTCAAACATAGTTATGGCCATAGTTGTAGCTCTA 1326
| ||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1204 TACATGGCGGGAGTCCAAACCGCGGTTTCAAACATAGTGATGGCCATAGTGGTAGCTCTA 1263
Query 1327 ACCTTAGAGTTCATCACACCACTCTTCAAGTACACTCCAAATGCTATCCTCGCGGCCATC 1386
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1264 ACCTTAGAGTTCATCACACCACTCTTTAAATACACTCCAAATGCTATCCTCGCGGCCATC 1323
Query 1387 ATTATATCGGCTGTCCTCGGTCTTATCGATATTGACGCAGCGATTCTCATATGGAGGATC 1446
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1324 ATTATATCGGCTGTCCTCGGTCTTATCGATATTGACGCTGCGATTCTTATATGGAGGATC 1383
Query 1447 GATAAACTCGACTTCTTGGCTTGCATGGGAGCTTTCTTAGGAGTCATCTTCATCTCGGTT 1506
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1384 GATAAACTCGACTTCTTGGCTTGCATGGGAGCATTCTTTGGAGTCATCTTCATCTCTGTT 1443
Query 1507 GAGATCGGTCTCTTGATCGCTGTGGTGATCTCTTTTGCAAAGATATTGCTTCAAGTGACG 1566
|||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1444 GAGATCGGGCTCTTGATCGCCGTGGTGATCTCTTTTGCAAAGATACTGCTGCAAGTGACG 1503
Query 1567 AGACCAAGAACCACGGTTCTAGGGAAGCTGCCAAATTCGAATGTATATCGGAACACTCTA 1626
||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1504 AGACCAAGAACGACGATTCTAGGGAAGCTGCCAAATTCGAACGTGTATCGGAACACTCTA 1563
Query 1627 CAGTATCCGGACGCTGCCCAAATTCCCGGAATCTTGATCATCCGTGTTGACTCGGCCATC 1686
||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||
Sbjct 1564 CAGTATCCGGACGCTGCTCAGATTTCCGGAATCTTGATCATCCGTGTTGACTCCGCCATC 1623
Query 1687 TACTTTTCCAACTCCAACTATGTCCGAGAAAGGGCATCAAGATGGGTGCGAGAGGAGCAA 1746
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1624 TACTTTTCCAACTCCAACTATGTCCGAGAAAGGGCGTCAAGATGGGTGCGAGAGGAGCAA 1683
Query 1747 GAAAATGCTAAGGAATATGGCATGCCGGCAATCAGATTTGTGATTATTGAGATGTCACCG 1806
||||| ||||| ||| | |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1684 GAAAACGCTAAAGAAGAGGGCAGGCCGGCAATCAAATTTGTGATTATTGAGATGTCACCT 1743
Query 1807 GTTACCGATATCGATACCAGTGGTATCCACTCCATCGAAGAACTTCTCAAGAGCCTCGAG 1866
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1744 GTTACCGATATCGATACCAGTGGTATTCACTCCATCGAAGAACTTCTCAAGAGCCTCGAG 1803
Query 1867 AAGCAAGAAATTCAGTTGATTCTAGCAAATCCAGGACCAGTGGTGATTGAGAAACTTTAT 1926
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1804 AAGCAAGAGATTCAGTTGATTCTAGCAAATCCTGGACCAGTGGTGATTGAGAAACTTTAT 1863
Query 1927 GCTTCAAAGTTCGTCGAGGAGATTGGAGAGAAAAATATCTTCCTTACTGTTGGCGACGCG 1986
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 GCTTCCAAGTTCGTCGAGGAGATTGGAGAGAAAAATATCTTCCTTACTGTTGGCGACGCG 1923
Query 1987 GTCGCAG-TT-TGTTCTACGGAAGTGGCTGAGCAACAAACTTAatatcgtctattcatat 2044
|| |||| || ||||| | | | ||||||| |||||| ||||||| ||| |||||||||
Sbjct 1924 GTGGCAGATTGTGTTCCAAG-AT-TGGCTGAACAACAAGCTTAATAGCGTTTATTCATAT 1981
Query 2045 a 2045
|
Sbjct 1982 A 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87036209825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5