BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08630.1
Length=2538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340666 jgi|Araly1|340666|fgenesh1_pg.C_scaffold_3000429 1404 0.0
> Ahg340666 jgi|Araly1|340666|fgenesh1_pg.C_scaffold_3000429
Length=2433
Score = 1404 bits (760), Expect = 0.0
Identities = 868/920 (94%), Gaps = 7/920 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAACACGAGACCTATTCATGTTAGGAATAAGAGTACGGAACCAGGAACACCATCT 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGAAACACGAGACCTGTTCATGTTAGGAATAAGAGTACGGAACCAGGAACACCCTCT 60
Query 61 TCGCCTATGATGACGTCTCCTCTAATGCATCGTCATACACGTTCAGGATCAAATGCTGGG 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TCGCCTATGATGACGTCTCCTCTAATGCATCGGCATACACGTTCAGGATCAAATGCTGGC 120
Query 121 CCAGCTTCGAATGCTAAGAAAGCTCAGACAAAAGCAGCTGCTCAGAGACTTGCGGCTGTG 180
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGCTTCCAATGCTAAGAGAGCTCAGACAAAAGCAGCTGCTCAGAGACTTGCGGCTGTG 180
Query 181 ATGTCAAATCAAACAGGGGACGAGGAAGATAGTGATGAAGACCTTTCCTTTGACTATAAT 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGTCAAATCAAACAGGAGACGAAGAAGATAGTGATGAAGACCTTTCCTTTGACTATAAT 240
Query 241 GCTATC-GGAACAGGGAGCATTGGACTCGCAGCTGGAAGATCTCATCCTTCTCGCTCTCC 299
||| || || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 241 GCT-TCAGGTACAGGGAGCATTGGACTCGCTTCCGGAAGATCTCATCCTTCTCGCTCGCC 299
Query 300 TGTGATTAGGAATCCTATGGCAAGGCGTCAACAGATGGCAACTCCACAGTTAGTTGATGA 359
||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 300 AGTGATTAGGAACCCTATGGCAAGGCGTCCACAGATGGCAACTCCACAGTTAGCTGATGA 359
Query 360 GGACAATGAGGATGATGATTTTTCAGTGGATGTAACGAGCAGTAGACCAAGTATTGGACT 419
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 360 GGACAATGAAGATGATGATTTTTCAGTGGATGTATCGAGCAGCAGACCAAGTATTGGACT 419
Query 420 TCCTGGTGGAAGAGCAATGAGACCTCAGTCTCCTGTGATGACTAAGATTGCACCTCCGAG 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCTGGTGGAAGAGCTATGAGACCTCAGTCTCCTGTGATGACTAAGATTGCACCTCCGAG 479
Query 480 ACGTACACAACCAACAAACGAAGGAAATAAGAATGACGGTAATGATGATGATGATGTTGT 539
||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 480 ACGTACACAACCAGCAAATGAAGGAAATAAGAATGACGGT---GATGATGATGATGTTGT 536
Query 540 TTCTA-TAGATTATACAATTGGTAGACCAAGTATTGGGCTTGGAAGTGGGAGGGCTATGC 598
||| | |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 537 TTC-AGTAGATTATGCAATTGGTAGACCAAGTATTGGGCTTGGAAGTGGGAAGGCAATGC 595
Query 599 GGCCACAATCTTCTATGAACAAAACCCAACCACAAGGGCGTCCGGTGATGGCAGCTCATC 658
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 GGCCACAGTCTTCTATGAACAAAACCCAACCACAAGGGCGTCCCGTGATGGCAGCTCATC 655
Query 659 AGCGAGCAGATGAGGATAACGAAGATGATGAGACTCCATATGTTTATACAAGCAGCATTC 718
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 656 AGCCAGTGGATGAGGATAACGAAGATGATGAGACTCCATATGTTTATACAAGCGGCATTC 715
Query 719 CAAGTGTAGGACTTCCTGGTGGAAGGGCTGCACGGTCACGTTCTCCTCTGACTAAAAACC 778
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 716 CAAGTGTAGGACTTCCTGGTGGAAGGGGAGCTCGGTCACGTTCTCCTCTGACTAAAAATC 775
Query 779 CTCCACTGAGGCATCCACATGCAGTAGCTCAGCCACCATCCAATGGAGAAAGTGATGTTG 838
||||| ||||||||||||| |||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 776 CTCCATTGAGGCATCCACAAGCAGTAGCTCAGCCACCAGCCAATAAAGACAGTGATGCTG 835
Query 839 ATTATGATGAGTCGTATACTAGTGGCATGCCAAGCATTGGACTTGCAGGTGGACGATCAA 898
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 836 ATTATGATGAGTCGTATACTAGTGGAATGCCAAGCATTGGACTTGCGGGTGGACGATCAA 895
Query 899 TGAGACCTCGCACTCCTTTG 918
||||||||||||||||||||
Sbjct 896 TGAGACCTCGCACTCCTTTG 915
Score = 878 bits (475), Expect = 0.0
Identities = 545/576 (95%), Gaps = 15/576 (3%)
Strand=Plus/Plus
Query 918 GTCAATTCGTACTAAGGAACAACCTCAGACCGGACTTCCAACTTCAGGTAGCCGATCTTC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1008 GTCAATTCGTACTAAGGAACAACCTCAGACCGGACTTCCAACTTCAGGTAGCCGATCCTC 1067
Query 978 ATTATATGAGGATTCCACAGAATCTTCAGCTATGTCAACTTTGACGCATCCATCTCAGAC 1037
||||| |||||||||||||||||||||||| | | | ||||||||||||
Sbjct 1068 ATTATGTGAGGATTCCACAGAATCTTCAGC----T--A---T------TCCATCTCAGAC 1112
Query 1038 AACAAACCAAGTGGAGCAATCTCCATCTGCTCGTTCTGCAATCTCTAACAAATCATCCCA 1097
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1113 AACAAACCAAGTGGAGCAATCTCCATCTGCTCGTTCTGCATTCTCTACCAAATCATCTCA 1172
Query 1098 GTCTCTCAGTGCTATGGACCAACCTCCATCAGCTCGTTCATCTTTCAATGGTCGTCCAAT 1157
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1173 GTCTCTCAGTGCTATGGATCAACCTCCATCAGCTCGTTCATCTTTCAGTGGTCGTCCAAT 1232
Query 1158 AAGGACAGCTCCTTTAATGCCATCTTCTGTGCCTATATCACTCAAACCAGTGACTCCTGC 1217
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1233 AAGGACAGTTCCATTAATGCCATCTTCGGTGCCTATATCACTCAAACCAGTGACTCCTGC 1292
Query 1218 ATTTCAATCTAACACGCCAACCAATCTTCGAAAAGATAAAAGGTTTTCCATGGATTTGGG 1277
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1293 ATTTCAATCTGATACGCCAACCAATCTTCGAAAAGATAAAAGGTTTTCCATGGATATGGG 1352
Query 1278 AAGCTCAGGCAACTTAAGAGAGTTAGGGAGCCAACGTTCTACTTCAGCTTTGCAAGATGA 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 AAGCTCAGGCAACTTAAGAGAGTTAGGGAGCCAACGTTCTACTTCAGCTTTGCAAGATGA 1412
Query 1338 GGTTGATATGCTACAGGAAGAAAATGAAAGTTTGTTAGAAAAGCTTCGACTTGCAGAAGA 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GGTTGATATGCTACAGGAAGAAAATGAAAGTTTGTTAGAAAAGCTTCGACTTGCAGAAGA 1472
Query 1398 TAAATGTGAAGAGGCTGATGCAAGAGCTAAGCAACTTGAGAAACAGGTTGAAATCCTTGG 1457
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 TAAGTGTGAAGAAGCAGATGCAAGAGCTAAGCAACTTGAGAAACAGGTTGAAATCCTTGG 1532
Query 1458 AGAAGGTGTTACTATGGACGCACGTCTTTTAAGCAG 1493
||||||||||||||||||||||||||||||||||||
Sbjct 1533 AGAAGGTGTTACTATGGACGCACGTCTTTTAAGCAG 1568
Score = 444 bits (240), Expect = 2e-123
Identities = 262/273 (96%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 1598 CATCTTCATTGGACCAGCTTCATGAAGTTGAATTAGAGCTTAACTCTCTTAAGACCGTGA 1657
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 CATCTTCTTTAGAGCAGCTTCATGAAGTTGAATTAGAGCTTAACTCTCTTAAGACCGTGA 1750
Query 1658 CCAAGAGATTGATATTGACTCAGGAGGAGATGGAAGAGGTTGTTCTGAAGAGGTGCTGGC 1717
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 CCAAGAGATTGGTATTGACTCAGGAGGAGATGGAAGAGGTTGTTCTGAAGAGGTGCTGGC 1810
Query 1718 TTTCACGATATTGGGGCTTATGCGTTAGACATGGCATTCAACCGGACATTGCAGGAGGAA 1777
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 1811 TTTCACGTTATTGGGGCTTATGTGTTAGACATGGCATTCAAGCGGACATTGCAGGAGCAA 1870
Query 1778 AACACGAATACTGGTCATCATTTGCACCTCTTCCTCTAGAGATTGTTCTTTCTGCAGGAC 1837
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1871 AGCACGAATACTGGTCATCATTTGCACCTCTTCCTCTAGAGATTGTTCTGTCTGCAGGAC 1930
Query 1838 AAAGAGCAAGGGACGGAGTTTCACAATGTAATA 1870
||||||||||||||||||||||||||| |||||
Sbjct 1931 AAAGAGCAAGGGACGGAGTTTCACAATCTAATA 1963
Score = 427 bits (231), Expect = 2e-118
Identities = 267/285 (94%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 2254 GAGTTGAGCGACGAAGAAGTTGAAGATGTGAATTTTAAACAGGCCTGGCTTTCATATTTC 2313
||||| ||||| || |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2149 GAGTTAAGCGAGGAGGAAGTTGAAGATGTGAGTTTTAAACAGGCCTGGCTCTCATATTTC 2208
Query 2314 TGGAGAAGAGCTAAAAACCATGAAATCGAATCTGATCTAGTAGATGAGCGACTCCAGTAT 2373
||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct 2209 TGGAGAAGAGCTAAAAACCATGATATCGAATCTGATCTTGCGGATGAGCGACTCCAGTAT 2268
Query 2374 TGGATAAACCAAGGGACTCGATCTGCCACATCACAAGATGCTGTCGATGTTGAAAGAGGG 2433
||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||
Sbjct 2269 TGGATAAACCAAGGGACTCGATCTGCCACATCACAGGACGCTGTTGATGTTGAAGGAGGG 2328
Query 2434 CTTATGGAGCTGAGGAAGCTGAACATAGAGTCACAGTTATGGCAAAAATCAAGGAAAGGG 2493
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2329 CTAATGGAGCTGAGGAAGCTGAACATAGAGTCACAGCTCTGGCAAAAATCAAGGAAAGGG 2388
Query 2494 CTTGACCATGAATCTAACCCTTCTCATCTTGAACTTTCCTTCTGA 2538
|||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2389 CTTGACCATGAAGCCAACCCTTCTCATCTTGAACTTTCCTTCTGA 2433
Score = 209 bits (113), Expect = 7e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1961 CTAATAACACTTATGGCGAAAGAGAAAAATCATTGCAAAACTTGCAAGAAACTTCTGGGG 2020
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1958 CTAATAACACTTACGGCGAAAGAGAAAAATCATTGCAAAACTTGCACGAAACTTCTGGAG 2017
Query 2021 AAGGAAATCTCGAAAACATGATATGGGTCGAGAAAGGTTTGCGGGAGCTGGCTTCACTAA 2080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 AAGGAAATCTCGAAAACATGATATGGGTCGAGAAAGGTTTGCGGGAGCTGGCTTCACTAA 2077
Query 2081 AG 2082
||
Sbjct 2078 AG 2079
Score = 137 bits (74), Expect = 3e-31
Identities = 76/77 (99%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 2137 CTAAAGGTTCAGGAGGCAGTTGCATTTGTCATGGCTCAAAATAGACGGAACACATCATCA 2196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2074 CTAAAGGTTCAGGAGGCAGTTGCGTTTGTCATGGCTCAAAATAGACGGAACACATCATCA 2133
Query 2197 AAGTTTTTTGTTTCAGA 2213
|||||||||||||||||
Sbjct 2134 AAGTTTTTTGTTTCAGA 2150
Score = 132 bits (71), Expect = 1e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1521 GAAAAGAGGCAGCTCTACAACAGAGAGAGGCTGCTTTGAGAATTGCATCACAAAATCATG 1580
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1568 GAAAAGAGGCAGCTCTACAACAGAGAGAGGCTGCTTTGAGAGTTGCATCACAAAATCATG 1627
Query 1581 GAGGAAAGAGGGAAGAT 1597
|||||| ||||||||||
Sbjct 1628 GAGGAAGGAGGGAAGAT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95682695440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5