BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08670.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894992 jgi|Araly1|894992|Al_scaffold_0006_2988 839 0.0
> Ahg894992 jgi|Araly1|894992|Al_scaffold_0006_2988
Length=654
Score = 839 bits (454), Expect = 0.0
Identities = 593/655 (91%), Gaps = 29/655 (4%)
Strand=Plus/Plus
Query 1 ATGAAGCAATCTCTTCTTCTATCCTTCGTGTTACTACTACTCTCATCATCATCACTCGTG 60
|||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 1 ATGAAGCAATCTCTTCTTCTTTCCTTCGTGTTACTATTACTTTCATCATCATCACTCGTT 60
Query 61 ACACCAATCCATGCACGTAACAAATCAAATCCGGCAAAGTCTCCTGTTGGTGCTCCAGCA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 ACACCAATCCATGCACGTAACAAATCAAATCCGGCAAAGTCTCCCGTTGGTGCTCCGGCA 120
Query 121 CCAGGACCATCAAGTTCCGATTGTTCTACAGTAATA-TATAGCATGATGGATTGTCTCGG 179
|||||||||||| |||| ||||||||| |||||||| | |||||||||||||||||||
Sbjct 121 CCAGGACCATCAGGTTCTGATTGTTCTTCAGTAATACT-TAGCATGATGGATTGTCTCAC 179
Query 180 GTACCTTGGTGTCGGATCAAACGAAACTAAGCCAGAGAAATCGTGTTGTACTGGAATAGA 239
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||
Sbjct 180 GTACCTTGGTGTCGGATCAAACGAGACTATGCCAGAGAAATCGTGTTGTGTTGGAATTGA 239
Query 240 AACTGTTTTACAATATAACCCACAATGTATTTGTGCTGGTTTGGTTAGTGCTGGCGAAAT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AACTGTTTTACAATATAATCCACAATGTATTTGTGCTGGTTTGGTTAGTGCTGGCCAAAT 299
Query 300 GGGAATTGAACTGAATAGCACAAGAGCTCTTGCAACACCTAAGGCTTGCAAACTCTCCAT 359
|||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 300 GGGAATTGAATTGAATAACACACGAGCCCTTGCAACACCTAAGACTTGCAAACTCTCCAT 359
Query 360 TGCTCCTCCTCATTGTGGTATAATAACTTCAGGCGCTACGACACCAGGTGCATCTCCTG- 418
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 TGCTCCTCCTCATTGTGGTATAATAACTTCAGGTGCTACGACACCAGGTGCATCTCCTGC 419
Query 419 -T-T--T----CCCCATCGGCTGGAGCACCTACGACTTCACCATCTGCAGCCAAGTCACC 470
| | | ||||||| || ||| ||||||||||||||||||| ||||||||||||||
Sbjct 420 ATCTCCTGTTTCCCCATCAGCCGGAACACCTACGACTTCACCATCCGCAGCCAAGTCACC 479
Query 471 -G-------G--AA-------A-CTTCGGCAACTTCGCCATCTTCGGATGAGACACCGTC 512
| | || | ||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGCAACTTCGGCAACTTCCCCATCTTCGGCAACTTCCCCATCTTCGGATGAGACACCGTC 539
Query 513 AATGACTGCACCTTCTCCTTCATCTTCTGGCACAAACATCCTCTCAGTTCCTGCACTCAC 572
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 540 AATGACTGCACCTTCTCCTACAACCTCTGGCACAAACATCCTCTCAGTTCCTGCACTCAC 599
Query 573 CATTGTTTTCGTTATTGTTTCTTCTGTCGCTTACATTTCGGCCTTTTCTAATTAA 627
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 CATTGTTTTCGTTATTGTTTCTTCTGTCGCTTACATTTCGGCTTTTTCTAATTAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5