BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08685.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489767 jgi|Araly1|489767|fgenesh2_kg.6__2901__AT4G08685.1 950 0.0
> Ahg489767 jgi|Araly1|489767|fgenesh2_kg.6__2901__AT4G08685.1
Length=725
Score = 950 bits (514), Expect = 0.0
Identities = 661/727 (91%), Gaps = 29/727 (4%)
Strand=Plus/Plus
Query 6 TGTTTTCACATTTAAACGACACTTAAGTGCCCACTGGCCACTTCCATTGACACCCATTAT 65
||||||||| |||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 4 TGTTTTCACGTTTAAACGACACTTAAGTGCCCACTGGCCACTTCCATT--CACAC-TCAT 60
Query 66 TACTCTGTCTGTGTCCTCTCTTTTAAAACCTAATCCTCTGTGAAACTTTTCCAGTT-AAA 124
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 61 TACTCT-TCTGTGTCCTCTCTTTTAAAACCTAATCCTCTGTGAATCTTTTCCTGTTAAAA 119
Query 125 ATC-TT-TTGC--AATGTCTAAAGCAGTTCTATTGGTCGCTCTCTGCTTTTTACCGGCTC 180
||| || |||| |||||||||||||||| ||||||| | ||||||||||||||||| ||
Sbjct 120 ATCTTTCTTGCATAATGTCTAAAGCAGTTTTATTGGTGGTTCTCTGCTTTTTACCGGTTC 179
Query 181 TAGCCATCGCGGCTAGACCGAACAAGAACCCTTTCGTCGTGCGAGGCCGTGTCTATTGCG 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 TAGCCATCGCGGCTAGACCGAACAAGAACCCGTTCGTCGTGCGAGGCCGTGTCTATTGCG 239
Query 241 ACACTTGCCTCGCTGGTTTCGAAACTCCAGCCTCTAC-T-TA--CA---T-C-TCCGGTG 291
||||||||||||||||||||||||||||||||||||| | || || | | |||||||
Sbjct 240 ACACTTGCCTCGCTGGTTTCGAAACTCCAGCCTCTACTTATATCCATGGTGCGTCCGGTG 299
Query 292 CAGTGGTTAGATTGGAATGTAAAGACAGGAGAACAATGGAGTTAACGTATAGCCACGAGG 351
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 CGGTGGTTAGATTGGAATGTAAAGACAGGAGGACAATGGAGTTAACGTATAGCCACGAGG 359
Query 352 CGAGAACTGACTCGACAGGATCATACAAGATCTTGGTTAACGAGGATCATGATGAGCAGT 411
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 360 CGAGAACTGACTCGACAGGATCATACAAGATTTTGGTTAACGAGGATCACGATGATCAGT 419
Query 412 TCTGTGATGCAATGTTGGTTCGTAGCTCTCAGTTACGGTGTTCCAATGTGTCCCCTGGTC 471
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 420 TCTGTGATGCAATGTTGGTTCGTAGCTCTCAGTTACGGTGTTCTAATGTCTCCCCTGGCC 479
Query 472 ATGACCGTGCCCGTGTGACTCTCACTCGCTTCAACGGTATTGCTTCTGACGACCGTTTTG 531
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 480 ATGACCGTGCCCGTGTGACTCTCACTCGTTTTAACGGTATTGCTTCAGACGACCGTTTTG 539
Query 532 CTAACAACATGGGATTTCTAAGGGATGCAGCTATGCCGGGTTGTGCGGATATCATGAAGC 591
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 540 CTAACAACATGGGATTTCTGAGGGATGCTGCTATGCCGGGTTGTGCCGATATCATGAAGC 599
Query 592 TATACCAAGAAACCGAGGACTAGTTTCTC-TGTTTTGTTAAGTATGTGGTATTAAAATGT 650
|||| ||||||||||||||||||||| | |||||||||||||||||||||| | | |
Sbjct 600 TATATCAAGAAACCGAGGACTAGTTT-TGGTGTTTTGTTAAGTATGTGGTATCAGGGTAT 658
Query 651 ATTGCAGCTTGTGTTATGTGCATTTTAT--C--TG-T--GAC--GGTTTTATTACTAATC 701
| |||| | |||| |||||||||||||| | | | | | ||||||||||||||||
Sbjct 659 ACTGCAACCTGTGGTATGTGCATTTTATTGCACTTCTCTGTCTTGGTTTTATTACTAATC 718
Query 702 Gaaaaaa 708
|||||||
Sbjct 719 GAAAAAA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5