BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08690.2
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351977 jgi|Araly1|351977|fgenesh1_pg.C_scaffold_6002570 1382 0.0
> Ahg351977 jgi|Araly1|351977|fgenesh1_pg.C_scaffold_6002570
Length=933
Score = 1382 bits (748), Expect = 0.0
Identities = 862/919 (94%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 94 ATGAACACTAATCCAGTGACTAATGGGTTTGTTAAACCTGTTCCTACTGAAGAAGAACAA 153
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACCCTAATCCAGTGACTAATGGGTTTGTTAAACCTGTTCCTACTGAAGAAGAACAA 60
Query 154 GCAAAGATTGAGGAAGTGAGGAAGCTATTAGGTCCATTACCGGAGAAGCTTTCGAGTTTT 213
|||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 61 GCAAAGATAGAGGAAGTGAGGAAGCTGCTAGGACCATTACCGGAGAAACTTTCGAGTTTT 120
Query 214 TGTTCCGATGATGCAGTTTTAAGGTATCTAAGGGCAAGGAATTGGCATGTCAAGAAAGCT 273
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TGTTCCGATGATGCGGTTTTGAGGTATCTAAGGGCGAGGAATTGGCATGTCAAGAAAGCT 180
Query 274 ACTAAGATGCTTAAAGAAACTTTGAAATGGAGAGTTCAATACAAACCTGAGGAGATTTGT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTAAGATGCTTAAAGAAACTTTGAAATGGAGAGTTCAATACAAACCTGAGGAGATTTGT 240
Query 334 TGGGAGGAAGTAGCTGGTGAAGCAGAGACAGGGAAGATATATAGATCGAGTTGTGTCGAT 393
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 241 TGGGAGGAAATAGCTGGTGAAGCAGAGACAGGGAAGATATATAGGTCAAGTTGTGTCGAT 300
Query 394 AAACTTGGACGACCTGTTCTCATTATGAGACCGAGTGTTGAGAATTCTAAATCGGTGAAA 453
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 301 AAACTTGGACGACCTGTTCTTATCATGAGACCGAGTGTTGAGAATTCTAAGTCGGTGAAA 360
Query 454 GGCCAGATTAGATACCTTGTGTATTGTATGGAGAATGCAGTACAAAATTTGCCACCAGGG 513
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 361 GGCCAGATTAGATATCTTGTGTATTGTATGGAGAATGCAGTTCAAAATTTGCCATCAGGG 420
Query 514 GAAGAACAGATGGTGTGGATGATAGATTTTCACGGTTATAGTTTGGCGAATGTATCGTTA 573
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 421 GAAGAACAGATGGTGTGGATGATAGATTTTCACGGCTATAGCTTGGCGAATATATCTTTA 480
Query 574 CGAACAACGAAAGAAACCGCTCATGTATTACAAGAACATTACCCTGAGAGATTAGCTTTT 633
|||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AGAACTACAAAAGAAACCGCTCATGTATTACAAGAACATTACCCTGAGCGATTAGCTTTT 540
Query 634 GCTGTTCTCTACAATCCTCCTAAGTTCTTTGAACCTTTCTGGAAGGTGGCGCGGCCCTTC 693
|| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 541 GCCGTTCTCTACAATCCTCCCAAGTTCTTTGAACCCTTCTGGAAGGTGGCGAGGCCCTTC 600
Query 694 TTAGAGCCGAAGACACGGAACAAAGTGAAGTTTGTTTACTCGGATGATCCAAACACTAAG 753
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 601 TTAGAGCCGAAGACACGGAACAAAGTGAAGTTTGTTTACTCAGATGACCCAAACACTAAG 660
Query 754 GTGATAATGGAGGAGAACTTTGATATGGAGAAAATGGAGTTAGCGTTTGGTGGTAACGAT 813
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 CAGATAATGGAAGAGAACTTTGATATGGAGAAAATGGAGTCAGCGTTTGGTGGTAACGAT 720
Query 814 GACTCGGGTTTTAACATAGAGAAACATTCAGAGAGAATGAAAGAGGACGACAAGAAAAGA 873
||||||||||| |||||| | || ||||||||||| |||||||| || ||||||||||||
Sbjct 721 GACTCGGGTTTCAACATAAACAAGCATTCAGAGAGGATGAAAGAAGATGACAAGAAAAGA 780
Query 874 TTGGCTTCGTTGGAGGGCATTGTTTCCGCTTCTCTAGACTCGCTCAGCATTTTATCGGTC 933
|||||||| ||||||| ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 781 TTGGCTTCCTTGGAGGACATACCTTCCGCTTCTCTAGACTCACTCAGCATCTTATCGGTC 840
Query 934 TCTGATGGTACCGCCTCTAACAGTGCTCACCCTAGCTCTCATGATGTCTCTGAGGATGAG 993
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 841 TCTGATGGTACAGCCTCTAACAGTGCTCACCCTAGCTCTCAGGATGTTTCTGAGGACGAG 900
Query 994 CATTAACCACAGAGAAAGG 1012
||| |||| ||| ||||||
Sbjct 901 CATCAACCTCAGGGAAAGG 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5