BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08700.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489770 jgi|Araly1|489770|fgenesh2_kg.6__2904__AT4G08700.1 1533 0.0
Ahg351979 jgi|Araly1|351979|fgenesh1_pg.C_scaffold_6002572 658 0.0
Ahg942659 jgi|Araly1|942659|scaffold_603203.1 654 0.0
> Ahg489770 jgi|Araly1|489770|fgenesh2_kg.6__2904__AT4G08700.1
Length=1114
Score = 1533 bits (830), Expect = 0.0
Identities = 994/1071 (93%), Gaps = 20/1071 (2%)
Strand=Plus/Plus
Query 271 TTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATCTCTGCACAAGCCATTGCTGT 330
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 60 TTGGTGGATTCTTGTCTTCATAAGCATCTTCTTCCTCATCTCTGCTCAAGCCATTGCTGT 119
Query 331 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 179
Query 391 CCAAACTTGTGGTTTTCCGAttctctatctccctctttgtttccttcctgcttcacactc 450
|||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 180 CCAAACGGGTGGCTTTCCGATTCTTTATCTTCCTCTTTGTCTCCTTCCTGCTTCACAATC 239
Query 451 ttcttcatcttcttgttctttcAAGACTCTGGTTTGGATTTATCTTTCTCTTGGTTTTGC 510
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TTCTTCATCTTCTTGTTCTTTCAAGACTCTGGTTTGGATTTATCTTTCGCTTGGTTTTGC 299
Query 511 TATTGGTTTAGACAATCTTTTATACTCTTTTGGTCTTTTGTATCTCTCTGCTTCAACTTA 570
|||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||
Sbjct 300 TATTGGTTTAGACAATCTTTTATACTCTATTGGGCTTTTGTATCACTCTGCTTCGACTTA 359
Query 571 TTCGATTCTTTGTTCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 630
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCGATTCTATGTGCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 419
Query 631 TCAGAAAATCACttgtttgattctcttctctgtgttgtttctctctgtctctgctgtgtt 690
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 420 TCAGAAAATCACTTGTTTGATTCTCTTCTCAGTGTTGTTTCTCTCTATCTCTGCTGTGTT 479
Query 691 ggtttctctTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTTCTCTTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 539
Query 751 TGGTTGTTTATGTACTGTTTTTGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 810
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTTGTTTCTGTACAGTTTTGGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 599
Query 811 GTTTTCTTTCGAGAATGTTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAAT 870
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 600 GTTTTCGTTCGAGAATGTTCTCAAGAGTGAGACTTTCGCTATGGTTCTCGAGATGCAGAT 659
Query 871 CTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 930
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTATACGTCACTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 719
Query 931 GATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGA-GGGTCAAGTCATTTATGTTTTGA 989
|| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 720 GAAGTTGTTGAGTGTGGAGATGGAAGAGTTTCA-GAAGGGTCAAGTCATTTATGTTTTGA 778
Query 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 CTTTGGTTGGGACAGCGGTTTCGTGGCAATTGGGTTCTTTAGGAGCCGTGGCGCTTATAT 838
Query 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109
||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 839 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACGCTCTCACTCATTGTAACGCCTC 898
Query 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169
|||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 899 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAAGTTAAGATGGTCGCAATGCTCA 958
Query 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229
| || |||| ||| |||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 959 TCGCGTTCACGGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAACGTAC 1018
Query 1230 AAAGAGCACGAGAAGCTCAGGCTGAA-TAGTTCTGCTGTGTTTTATTAGTTAATTTTGTT 1288
||||||||||| || | ||||| ||| || || | | ||| | ||| |||| |
Sbjct 1019 AAAGAGCACGAAAAACCCAGGCCGAACTA-TT-T--TA-GTT--A---GTTG-TTTTAT- 1066
Query 1289 AGTAACCT-TTCTTAGAACAAGCTAGCTACAAGTGTTGTATTGTATATAGT 1338
| ||| | || | |||||||| ||||||||| ||||||||| ||||||||
Sbjct 1067 A--AAC-TATTGT-AGAACAAGGTAGCTACAAATGTTGTATTCTATATAGT 1113
> Ahg351979 jgi|Araly1|351979|fgenesh1_pg.C_scaffold_6002572
Length=753
Score = 658 bits (356), Expect = 0.0
Identities = 417/447 (93%), Gaps = 2/447 (0%)
Strand=Plus/Plus
Query 811 GTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAA 869
|||||| |||||||| | ||||||||||||||| ||| |||| |||||||||||||| |
Sbjct 306 GTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTCGAGATGCAGA 364
Query 870 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAAT 929
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 365 TCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCAAGCGGGGAAT 424
Query 930 GGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTCAAGTCATTTATGTTTTGA 989
|| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 425 GGCTGTTGTTGAGTGAGGAGATGGAAGAGTTTCAGGAGGGTCAAGTCATTTATGTTTTGA 484
Query 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049
||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 485 CTTTGGTTGGGACAGCGGTGTCGTGTCAATTGGGTTCTGTAGGATCCGTGGCGCTTATAT 544
Query 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109
||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 545 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACACTCTCACTCATTGTAACGCCTC 604
Query 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 605 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAGGTTAAGATTGTCGCGATGCTCA 664
Query 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229
||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 665 TTGCCTTCACAGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAAAGTAC 724
Query 1230 AAAGAGCACGAGAAGCTCAGGCTGAAT 1256
||||||||||||||||||| || ||||
Sbjct 725 AAAGAGCACGAGAAGCTCAAGCCGAAT 751
Score = 409 bits (221), Expect = 3e-113
Identities = 263/283 (93%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 191 ATGTTACTGCTAAAGGAAGAAGATGAAGGAACAAGAAGAACTAGTGTTCCTACACAACTC 250
||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1 ATGTTGCTGCTAAAGGAAGAAGATGAGGGAAGAGGAAGAACTAGTGTTCCTACACAACTC 60
Query 251 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATC 310
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATGAAACTAAAACGAACCCATTGGTGGATTCTTGTCTTCATAAGTATCTTCTTCCTCATC 120
Query 311 TCTGCACAAGCCATTGCTGTTCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 370
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGCTCAAGCCATTGGTGTTCTGCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGT 180
Query 371 AAATGGATCTCTACTCTTGTCCAAACTTGTGGTTTTCCGAttctctatctccctctttgt 430
||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 181 AAATGGATCTCCACTCTTGTCCAAACCTGTGGCTTTCCGATTCTTTATCTCCCTCTTTGT 240
Query 431 ttccttcctgcttcaca--ct-cttcttcatcttcttgttctt 470
|||||||| ||||| | || ||||||||| ||||| |||||
Sbjct 241 ATCCTTCCTTCTTCAAAATCTTCTTCTTCATTTTCTTCTTCTT 283
> Ahg942659 jgi|Araly1|942659|scaffold_603203.1
Length=616
Score = 654 bits (354), Expect = 0.0
Identities = 424/458 (93%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 801 CTCTTATGCAGTTTTCTTTCGAGAATG-TTCTCAAGAGTGAGACGTTCTCTATGGTTCTC 859
|||||||||||||||| |||||||| | ||||||||||||||| ||| |||| ||||||
Sbjct 148 CTCTTATGCAGTTTTCATTCGAGAA-GATTCTCAAGAGTGAGATTTTCGCTATAGTTCTC 206
Query 860 GAGATGCAAATCTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCG 919
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 207 GAGATGCAAATCTATACGTCGCTTGTGGCTACTTGTGTTGCGGTTATCGGGTTGTTTGCG 266
Query 920 AGCGGGGAATGGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGAGGGTC-AAGTCAT 978
|||||||| ||| ||||||||||| |||||||||||||||||| ||||||| ||| |||
Sbjct 267 AGCGGGGATTGGCTGTTGTTGAGTAAGGAGATGGAAGAGTTTCAGGAGGGTCAAAG-CAT 325
Query 979 TTATGTTTTGACTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGT 1038
||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| || |
Sbjct 326 TTATGTTTTGAATTTGGTTGGGACAGCGGTTTCGTGGCAACTGGGTTCTGTAGGATCCAT 385
Query 1039 GGCGCTTATATTTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCAT 1098
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 386 GGCGCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACTTTATTGGTACACTCTCACTCAT 445
Query 1099 TGTTACGCCTCTTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGT 1158
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 446 TGTTACGCCTCTTGCAGCCATTGCCGTGTTGCACGACAAGCTGACTGAGGTTAAGATGGT 505
Query 1159 CGCGATGCTCATTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGA 1218
||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 506 CGCAATGCTCATTGCCTTCATGGGATTCTCGTTTTATATCTACCAGACCTATCTTGATGA 565
Query 1219 CCTGAAAGTACAAAGAGCACGAGAAGCTCAGGCTGAAT 1256
| |||||||||||||||||||||||||| |||| ||||
Sbjct 566 CTTGAAAGTACAAAGAGCACGAGAAGCTTAGGCCGAAT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5