BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08770.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1 1910 0.0
Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1 1618 0.0
Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329 1502 0.0
Ahg941540 jgi|Araly1|941540|scaffold_602084.1 80.5 3e-14
> Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1
Length=1230
Score = 1910 bits (1034), Expect = 0.0
Identities = 1170/1236 (95%), Gaps = 7/1236 (1%)
Strand=Plus/Plus
Query 1 TCACTCAAATTAAACCATAACCAAATAAT-TCTCTTAAAAGAGCTAAGAAAATGCATTCC 59
|||||||||||||||||||||||||| || | |||| | ||||| |||||||||||||||
Sbjct 1 TCACTCAAATTAAACCATAACCAAAT-ATCTATCTT-AGAGAGCAAAGAAAATGCATTCC 58
Query 60 TCTTTGATAAAATTGGGATTTCTTCTTCTTCTTATTCAGGTATCATTGTCTCATGCTCAA 119
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 59 TCTTTGATAAAATTGGGATTTCTTCTTCTTC---TTCAGGTCTCATTGTCTCATGCTCAA 115
Query 120 CTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGCAACCACTACC 179
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 116 CTAAGCCCTTCCTTTTATGATAAAACATGTCCGCAAGTCTTTGACATTGTAACCAATACC 175
Query 180 ATTGTCAATGCTCTAAGATCGGACCCTCGCATCGCTGCAAGCATCCTTCGTCTTCATTTC 239
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 176 ATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCATTCGTCTTCATTTC 235
Query 240 CACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACCACATCGTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACCACATCGTTT 295
Query 300 AGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCCGCTCGAGGTTTCGATGTGATCGAC 359
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGATGTGATCGAC 355
Query 360 AAAATGAAGGCTGCCGTGGAGAAAGCATGTCCTAAAACTGTTTCATGTGCTGATTTGCTC 419
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 356 AAAATGAAGGCTGCCGTAGAGAAAGCATGTCCTAGAACTGTTTCATGTGCTGATTTGCTC 415
Query 420 GCCATCGCGGCTCAAGAATCTGTCGTTTTGGCGGGAGGTCCTTCATGGAGGGTTCCAAAT 479
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 416 GCCATCGCAGCTCAAGAATCTGTTGTTTTGGCAGGAGGTCCTTCATGGAGGGTTCCAAAT 475
Query 480 GGAAGAAGAGACAGCTTAAGAGGGTTCATGGATCTTGCTAATGATAACCTTCCAGCTCCA 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 GGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATGATAACCTTCCAGCTCCA 535
Query 540 TTCTTTACCCTTAACCAACTTAAGGATAGATTCAAAAACGTCGGACTCGACCGTGCTTCT 599
| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 536 TCCTTTACCCTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGACCGTGCTTCT 595
Query 600 GATCTCGTTGCTCTTTCTGGTGGTCACACCTTTGGCAAAAACCAATGTCAATTCATAATG 659
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 596 GATCTCGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAACCAATGTCGGTTCATAATG 655
Query 660 GATCGGCTTTATAACTTCAGTAACACTGGTTTACCCGACCCAACCCTTGATAAATCTTAC 719
||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 656 GATCGGCTTTACAACTTCAGTGACACCGGTTTACCCGACCCAACCCTTGATAAATCTTAT 715
Query 720 CTCTCCACACTCAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTATTGGTAGATTTT 779
||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 716 CTCACCACACTCAGAAAACAATGTCCGCGTAACGGAAACCAGAGTGTCTTGGTAGATTTT 775
Query 780 GATTTACGTACGCCAACACTCTTTGACAACAAGTATTATGTGAACCTCAAGGAGAACAAA 839
||||||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 776 GATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCAAAGAGAACAAA 835
Query 840 GGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGACACTCTTCCT 899
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 836 GGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCGGACACTCTCCCT 895
Query 900 TTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGCGAAGGCAATG 959
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 896 TTAGTCCGAGAATTCGCTGATGGTCAAGGAAAATTTTTCGATGCGTTCGTGAAGGCAATG 955
Query 960 ATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAAGATTGAACTGT 1019
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 956 ATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAGCAAGGAGAAATAAGATTGAATTGT 1015
Query 1020 AGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGAAGATGCTCTTGAATTTGCA 1079
|||||||||||||||||| | | ||||||||||||||||||||||||| || |||||||
Sbjct 1016 AGAGTGGTGAATTCGAAACCGAGAATCATGGATGTGGTAGAAGATGCTATTAAATTTGCT 1075
Query 1080 AGCTCAATGTGAGGAAATGTTTTTCTTTAACAATAAATAAATTATCAATGTTGTCAAGAT 1139
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 AGCTCAATGTGAGGAAATGTTTTTCTTTAATAATAAATAAATTATCAATGTTGTCAAGAT 1135
Query 1140 GTTATCtttttttCTTACTTCCTTGTTTGTTTTGTGTTACTTATTTAAATTCTATATAAC 1199
|||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 1136 GTTATCTTTTCTTCTTACTTCCTTGTTTCTTTTACGTTACTTATTTAAAATCTATATAAC 1195
Query 1200 TATTAAACCTTGAATCCATAAATTATTTTTACCTAT 1235
|||||| ||||| |||||||| ||||||||||||||
Sbjct 1196 TATTAA-CCTTGGATCCATAATTTATTTTTACCTAT 1230
> Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1
Length=1041
Score = 1618 bits (876), Expect = 0.0
Identities = 987/1042 (95%), Gaps = 2/1042 (0%)
Strand=Plus/Plus
Query 51 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTTCTTATTCAGGTATCATTGTCT 110
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTTCTTCTTCAGGTATCATTGTCT 60
Query 111 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGCA 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
Query 171 ACCACTACCATTGTCAATGCTCTAAGATCGGACCCTCGCATCGCTGCAAGCATCCTTCGT 230
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
Query 231 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACC 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
Query 291 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 350
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 ACATCGTTTAGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 300
Query 351 GTGATCGACAAAATGAAGGCTGCCGTGGAGAAAGCATGTCCTAAAACTGTTTCATGTGCT 410
||||||||||||||||| || ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 301 GTGATCGACAAAATGAAAGCCGCCGTGGAGAAAGCATGTCCTGGAACCGTTTCGTGTGCT 360
Query 411 GATTTGCTCGCCATCGCGGCTCAAGAATCTGTCGTTTTGGCGGGAGGTCCTTCATGGAGG 470
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GATATGCTCGCCATCGCAGCTCAAGAATCTGTCGTTTTGGCAGGAGGTCCTTCATGGAGG 420
Query 471 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTCATGGATCTTGCTAATGATAACCTT 530
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATAATAACCTT 480
Query 531 CCAGCTCCATTCTTTACCCTT-AACCAACTTAAGGATAGATTCAAAAACGTCGGACTCGA 589
|||| ||||| || ||||||| || |||||||||||||||||||||| |||||||| ||
Sbjct 481 CCAGGTCCATCCTCTACCCTTCAAG-AACTTAAGGATAGATTCAAAAATGTCGGACTAGA 539
Query 590 CCGTGCTTCTGATCTCGTTGCTCTTTCTGGTGGTCACACCTTTGGCAAAAACCAATGTCA 649
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGTCACACCTTTGGCAAAAACCAATGTCA 599
Query 650 ATTCATAATGGATCGGCTTTATAACTTCAGTAACACTGGTTTACCCGACCCAACCCTTGA 709
|||||||| ||||| ||||| |||||| || | || |||||||||||||||||||||||
Sbjct 600 GTTCATAATAGATCGCCTTTACAACTTCGGTGATACCGGTTTACCCGACCCAACCCTTGA 659
Query 710 TAAATCTTACCTCTCCACACTCAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTATT 769
||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 660 TAAATCTTACCTCGCAACACTCAGAAAACAATGTCCACGTAATGGAAACAAGAGTGTCTT 719
Query 770 GGTAGATTTTGATTTACGTACGCCAACACTCTTTGACAACAAGTATTATGTGAACCTCAA 829
||||||||||||||| ||||| |||||| ||||||||||||| || |||||||| |||||
Sbjct 720 GGTAGATTTTGATTTCCGTACACCAACAGTCTTTGACAACAAATACTATGTGAATCTCAA 779
Query 830 GGAGAACAAAGGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGA 889
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 GGAGAACAAAGGACTTATCCAGACCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGA 839
Query 890 CACTCTTCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGC 949
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CACTCTCCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGC 899
Query 950 GAAGGCAATGATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAAG 1009
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 GAAGGCAATGATAAGAATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATTAG 959
Query 1010 ATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGAAGATGCTCT 1069
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 960 ATTGAACTGTAGAGTGGTGAATTCGAAATCTAGAATCATGGATGTGGTAGAAGATGCTAT 1019
Query 1070 TGAATTTGCAAGCTCAATGTGA 1091
||||||||| ||||||||||||
Sbjct 1020 TGAATTTGCTAGCTCAATGTGA 1041
> Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329
Length=1041
Score = 1502 bits (813), Expect = 0.0
Identities = 968/1044 (93%), Gaps = 6/1044 (1%)
Strand=Plus/Plus
Query 51 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTTCTTATTCAGGTATCATTGTCT 110
||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||
Sbjct 1 ATGCATTCCTCTTTGATAAAATTAGGATTTCTTTTTCTTCTTCTTCAGGTCTCATTGTCT 60
Query 111 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGCA 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
Query 171 ACCACTACCATTGTCAATGCTCTAAGATCGGACCCTCGCATCGCTGCAAGCATCCTTCGT 230
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
Query 231 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACC 290
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCATCGATATTGTTAGACAACACA 240
Query 291 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 350
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGCAACGCTAATTCCGCTCGAGGTTTCGAT 300
Query 351 GTGATCGACAAAATGAAGGCTGCCGTGGAGAAAGCATGTCCTAAAACTGTTTCATGTGCT 410
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 GTGATCGACAAAATGAAGGCTGCCGTAGAGAAAGCATGTCCTAGAACTGTTTCATGTGCT 360
Query 411 GATTTGCTCGCCATCGCGGCTCAAGAATCTGTCGTTTTGGCGGGAGGTCCTTCATGGAGG 470
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 361 GATTTGCTCGCCATCGCAGCTCAAAAATCTGTCGTTTTGGCGGGAGGTCCTTCATGGATG 420
Query 471 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTCATGGATCTTGCTAATGAT-AACCT 529
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAAT-ATGAACCT 479
Query 530 TCCAGCTCCATTCTTTACCCTTAACCAACTTAAGGATAGATTCAAAAACGTCGGACTCGA 589
||||| ||||| || ||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 480 TCCAGGTCCATCCTCTACCCTTAAAGTACTTAAGGATAGATTCAAAAATGTCGGACTAGA 539
Query 590 CCGTGCTTCTGATCTCGTTGCTCTTTCTGGTGGTCACACCTTTGGCAAAAACCAATGTCA 649
|||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 540 CCGTCCTTCTGATCTTGTTGCTCTTTCGGGTGGTCACACCTTTGGCAAAAGCCAATGTCA 599
Query 650 ATTCATAATGGATCGGCTTTATAACTTCAGT-AACACTGGTTTACCCGACCCAACCCTTG 708
|||||||| ||||||||||| |||||| || || || |||||||| |||||||||||||
Sbjct 600 GTTCATAATAGATCGGCTTTACAACTTCGGTGAA-ACCGGTTTACCTGACCCAACCCTTG 658
Query 709 ATAAATCTTACCTCT-CCACACTCAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTA 767
||||||||||||| | |||| ||||||||||||||||| | ||| ||||||||||||||
Sbjct 659 ATAAATCTTACCT-TGCCACGCTCAGAAAACAATGTCCGCTTAACGGAAACCAGAGTGTC 717
Query 768 TTGGTAGATTTTGATTTACGTACGCCAACACTCTTTGACAACAAGTATTATGTGAACCTC 827
||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| |||
Sbjct 718 TTGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAATAAGTACTATTTGAATCTC 777
Query 828 AAGGAGAACAAAGGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCA 887
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 778 AAAGAGAACAAAGGACTGATCCAGAGCGACCAAGAGTTATTCTCTAGCCCGGATGCTGCA 837
Query 888 GACACTCTTCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTC 947
|| ||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 GATACTATCCCTTTAGTCCGAGAATACGCTAATGGTCAAGGGAAATTTTTCGATGCGTTC 897
Query 948 GCGAAGGCAATGATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATA 1007
| || ||||||||||||||| | || ||||||||||||||||||||||| ||||||||
Sbjct 898 GTAAATGCAATGATAAGGATGGGAAGCCTTTCACCTTTAACAGGGAAACATGGAGAAATT 957
Query 1008 AGATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGAAGATGCT 1067
|||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 958 AGATTGAATTGTAGAGTGGTGAATTCGAAATCGAAAATCATGGATGTGGTGGATGATGCA 1017
Query 1068 CTTGAATTTGCAAGCTCAATGTGA 1091
||||||||| || |||||||||
Sbjct 1018 AATGAATTTGCCAGTTCAATGTGA 1041
> Ahg941540 jgi|Araly1|941540|scaffold_602084.1
Length=1037
Score = 80.5 bits (43), Expect = 3e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 226 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATC-GATATTGTT 280
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 224 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCTG-TATTGTT 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5