BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08780.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1 1602 0.0
Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1 1570 0.0
Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329 1541 0.0
Ahg941540 jgi|Araly1|941540|scaffold_602084.1 80.5 2e-14
> Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1
Length=1041
Score = 1602 bits (867), Expect = 0.0
Identities = 983/1041 (94%), Gaps = 0/1041 (0%)
Strand=Plus/Plus
Query 1 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTCCTTCTTCAGGTCTCATTGTCT 60
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGTATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTTCTTCTTCAGGTATCATTGTCT 60
Query 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGATATTGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
Query 121 ACCAATACCATTGTCAATGCGCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
Query 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
Query 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCAGCTCGAGGTTTCGAT 300
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 241 ACATCGTTTAGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 300
Query 301 GTAATCGACAAAATGAAGGCTGCCATCGAGAAAGCATGTCCTAGAACCGTTTCATGTGCT 360
|| |||||||||||||| || ||| | ||||||||||||||| |||||||||| ||||||
Sbjct 301 GTGATCGACAAAATGAAAGCCGCCGTGGAGAAAGCATGTCCTGGAACCGTTTCGTGTGCT 360
Query 361 GATATGCTCGCCATCGCAGCTAAAGAATCTATCGTTTTGGCGGGAGGTCCTTCATGGATG 420
||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
Sbjct 361 GATATGCTCGCCATCGCAGCTCAAGAATCTGTCGTTTTGGCAGGAGGTCCTTCATGGAGG 420
Query 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGTTTTATGGATCTTGCTAATGATAACCTT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATAATAACCTT 480
Query 481 CCAGGTCCATCTTCTACACTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGAC 540
||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||| |||
Sbjct 481 CCAGGTCCATCCTCTACCCTTCAAGAACTTAAGGATAGATTCAAAAATGTCGGACTAGAC 540
Query 541 CGTTCTTCTGATCTAGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAGCCAATGTCAG 600
||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 541 CGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGTCACACCTTTGGCAAAAACCAATGTCAG 600
Query 601 TTCATAATGGATCGTCTTTACAACTTCGGTGAAACCGGTTTACCCGACCCAACCCTTGAT 660
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TTCATAATAGATCGCCTTTACAACTTCGGTGATACCGGTTTACCCGACCCAACCCTTGAT 660
Query 661 AAATCTTACCTAGCCACACTAAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTCTTG 720
||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 661 AAATCTTACCTCGCAACACTCAGAAAACAATGTCCACGTAATGGAAACAAGAGTGTCTTG 720
Query 721 GTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCAAG 780
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GTAGATTTTGATTTCCGTACACCAACAGTCTTTGACAACAAATACTATGTGAATCTCAAG 780
Query 781 GAGAACAAAGGACTTATCCAAAGTGACCAAGAGTTGTTCTCTAGCCCTGATGCTGCAGAC 840
|||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||
Sbjct 781 GAGAACAAAGGACTTATCCAGACCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGAC 840
Query 841 ACTCTCCCTTTAGTTCGAGCATACGCTGATGGTCAAGGGACATTTTTCGATGCGTTCGTG 900
|||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 841 ACTCTCCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGCG 900
Query 901 AAAGCAATAATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAAGA 960
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AAGGCAATGATAAGAATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATTAGA 960
Query 961 TTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGATGATGCTCTT 1020
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 961 TTGAACTGTAGAGTGGTGAATTCGAAATCTAGAATCATGGATGTGGTAGAAGATGCTATT 1020
Query 1021 GAATTTGCCAGCTTTATGTGA 1041
|||||||| |||| ||||||
Sbjct 1021 GAATTTGCTAGCTCAATGTGA 1041
> Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1
Length=1230
Score = 1570 bits (850), Expect = 0.0
Identities = 980/1043 (94%), Gaps = 7/1043 (1%)
Strand=Plus/Plus
Query 1 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTCCTTCTTCAGGTCTCATTGTCT 60
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 50 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTC-T-T-CTTCTTCAGGTCTCATTGTCT 106
Query 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGATATTGTA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 107 CATGCTCAACTAAGCCCTTCCTTTTATGATAAAACATGTCCGCAAGTCTTTGACATTGTA 166
Query 121 ACCAATACCATTGTCAATGCGCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 167 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCATTCGT 226
Query 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACC 286
Query 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCAGCTCGAGGTTTCGAT 300
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 287 ACATCGTTTAGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 346
Query 301 GTAATCGACAAAATGAAGGCTGCCATCGAGAAAGCATGTCCTAGAACCGTTTCATGTGCT 360
|| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 347 GTGATCGACAAAATGAAGGCTGCCGTAGAGAAAGCATGTCCTAGAACTGTTTCATGTGCT 406
Query 361 GATATGCTCGCCATCGCAGCTAAAGAATCTATCGTTTTGGCGGGAGGTCCTTCATGGATG 420
||| ||||||||||||||||| |||||||| | |||||||| |||||||||||||||| |
Sbjct 407 GATTTGCTCGCCATCGCAGCTCAAGAATCTGTTGTTTTGGCAGGAGGTCCTTCATGGAGG 466
Query 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGTTTTATGGATCTTGCTAATGATAACCTT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 467 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATGATAACCTT 526
Query 481 CCAGGTCCAT-CTTCTACACTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGA 539
|||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CCAGCTCCATCCTT-TACCCTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGA 585
Query 540 CCGTTCTTCTGATCTAGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAGCCAATGTCA 599
|||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 586 CCGTGCTTCTGATCTCGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAACCAATGTCG 645
Query 600 GTTCATAATGGATCGTCTTTACAACTTCGGTGAAACCGGTTTACCCGACCCAACCCTTGA 659
||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 646 GTTCATAATGGATCGGCTTTACAACTTCAGTGACACCGGTTTACCCGACCCAACCCTTGA 705
Query 660 TAAATCTTACCT-AGCCACACTAAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTCT 718
||||||||| || | ||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 706 TAAATCTTATCTCA-CCACACTCAGAAAACAATGTCCGCGTAACGGAAACCAGAGTGTCT 764
Query 719 TGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCA 824
Query 779 AGGAGAACAAAGGACTTATCCAAAGTGACCAAGAGTTGTTCTCTAGCCCTGATGCTGCAG 838
| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| | |
Sbjct 825 AAGAGAACAAAGGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCGG 884
Query 839 ACACTCTCCCTTTAGTTCGAGCATACGCTGATGGTCAAGGGACATTTTTCGATGCGTTCG 898
|||||||||||||||| |||| || ||||||||||||||| | |||||||||||||||||
Sbjct 885 ACACTCTCCCTTTAGTCCGAGAATTCGCTGATGGTCAAGGAAAATTTTTCGATGCGTTCG 944
Query 899 TGAAAGCAATAATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAA 958
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 TGAAGGCAATGATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAGCAAGGAGAAATAA 1004
Query 959 GATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGATGATGCTC 1018
||||||| ||||||||||||||||||||| | | |||||||||||||||||| ||||||
Sbjct 1005 GATTGAATTGTAGAGTGGTGAATTCGAAACCGAGAATCATGGATGTGGTAGAAGATGCTA 1064
Query 1019 TTGAATTTGCCAGCTTTATGTGA 1041
|| ||||||| |||| ||||||
Sbjct 1065 TTAAATTTGCTAGCTCAATGTGA 1087
> Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329
Length=1041
Score = 1541 bits (834), Expect = 0.0
Identities = 976/1045 (93%), Gaps = 8/1045 (1%)
Strand=Plus/Plus
Query 1 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTCCTTCTTCAGGTCTCATTGTCT 60
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1 ATGCATTCCTCTTTGATAAAATTAGGATTTCTTTTTCTTCTTCTTCAGGTCTCATTGTCT 60
Query 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGATATTGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
Query 121 ACCAATACCATTGTCAATGCGCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
Query 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCATCGATATTGTTAGACAACACA 240
Query 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCAGCTCGAGGTTTCGAT 300
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGCAACGCTAATTCCGCTCGAGGTTTCGAT 300
Query 301 GTAATCGACAAAATGAAGGCTGCCATCGAGAAAGCATGTCCTAGAACCGTTTCATGTGCT 360
|| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 301 GTGATCGACAAAATGAAGGCTGCCGTAGAGAAAGCATGTCCTAGAACTGTTTCATGTGCT 360
Query 361 GATATGCTCGCCATCGCAGCT-AAAGAATCTATCGTTTTGGCGGGAGGTCCTTCATGGAT 419
||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 361 GATTTGCTCGCCATCGCAGCTCAAA-AATCTGTCGTTTTGGCGGGAGGTCCTTCATGGAT 419
Query 420 GGTTCCAAATGGAAGAAGAGACAGCTTAAGAGGTTTTATGGATCTTGCTAATGAT-AACC 478
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 420 GGTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAAT-ATGAACC 478
Query 479 TTCCAGGTCCATCTTCTACACTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCG 538
||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 479 TTCCAGGTCCATCCTCTACCCTTAAAGTACTTAAGGATAGATTCAAAAATGTCGGACTAG 538
Query 539 ACCGTTCTTCTGATCTAGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAGCCAATGTC 598
||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 539 ACCGTCCTTCTGATCTTGTTGCTCTTTCGGGTGGTCACACCTTTGGCAAAAGCCAATGTC 598
Query 599 AGTTCATAATGGATCGTCTTTACAACTTCGGTGAAACCGGTTTACCCGACCCAACCCTTG 658
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AGTTCATAATAGATCGGCTTTACAACTTCGGTGAAACCGGTTTACCTGACCCAACCCTTG 658
Query 659 ATAAATCTTACCTAGCCACACTAAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTCT 718
||||||||||||| ||||| || |||||||||||||| | ||| ||||||||||||||||
Sbjct 659 ATAAATCTTACCTTGCCACGCTCAGAAAACAATGTCCGCTTAACGGAAACCAGAGTGTCT 718
Query 719 TGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCA 778
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 719 TGGTAGATTTTGATTTACGTACACCAACACTCTTTGACAATAAGTACTATTTGAATCTCA 778
Query 779 AGGAGAACAAAGGACTTATCCAAAGTGACCAAGAGTTGTTCTCTAGCCCTGATGCTGCAG 838
| |||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||
Sbjct 779 AAGAGAACAAAGGACTGATCCAGAGCGACCAAGAGTTATTCTCTAGCCCGGATGCTGCAG 838
Query 839 ACACTCTCCCTTTAGTTCGAGCATACGCTGATGGTCAAGGGACATTTTTCGATGCGTTCG 898
| ||| |||||||||| |||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 839 ATACTATCCCTTTAGTCCGAGAATACGCTAATGGTCAAGGGAAATTTTTCGATGCGTTCG 898
Query 899 TGAAA-GCAATAATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATA 957
| ||| ||||| ||||||||| | || ||||||||||||||||||||||| ||||||||
Sbjct 899 T-AAATGCAATGATAAGGATGGGAAGCCTTTCACCTTTAACAGGGAAACATGGAGAAATT 957
Query 958 AGATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGATGATGCT 1017
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 958 AGATTGAATTGTAGAGTGGTGAATTCGAAATCGAAAATCATGGATGTGGTGGATGATGCA 1017
Query 1018 CTTGAATTTGCCAGCTTTA-TGTGA 1041
|||||||||||| || | |||||
Sbjct 1018 AATGAATTTGCCAG-TTCAATGTGA 1041
> Ahg941540 jgi|Araly1|941540|scaffold_602084.1
Length=1037
Score = 80.5 bits (43), Expect = 2e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 176 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATC-GATATTGTT 230
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||
Sbjct 224 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCTG-TATTGTT 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5