BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08790.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942669 jgi|Araly1|942669|scaffold_603213.1 1520 0.0
> Ahg942669 jgi|Araly1|942669|scaffold_603213.1
Length=966
Score = 1520 bits (823), Expect = 0.0
Identities = 920/967 (95%), Gaps = 5/967 (1%)
Strand=Plus/Plus
Query 73 GTAGACCGGCCACTGAGTGCTGCTGATGAACGCTTACTCTGTTTCTCTCGACTTCACTAA 132
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAGACCGGCCACT--G-CCTGCGGATGAACGCTTACTCTGTTTCTCTCGACTTCACTAA 57
Query 133 ACCTTCTCTATTCACACGCATCACTCTCTCTTCTCAGATTCCTCTAACCATGGCCACCAC 192
|||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 58 ACCTTCTCTATTCACAAGAATCGCTCTCTCTACTCAGATTCCTCTAACCATGGCCACCAC 117
Query 193 TGTAAACAAAACAGTTCGTGTCGCAGCTGCTCAAATGACATCGGTCAATGATCTAATGAC 252
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGTAAACAAAACAGTTCGCGTCGCAGCTGCTCAAATGACATCGGTCAATGATCTAATGAC 177
Query 253 CAACTTCGCCACTTGCTCTCGTCTCGTTCAAGAAGCAGCATTGGCTGGTGCAAAGCTGAT 312
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAATTTCGCCACTTGCTCTCGTCTCGTTCAAGAAGCAGCATTGGCTGGTGCAAAGCTGAT 237
Query 313 TTGCTTCCCTGAGAACTTCTCTTTTGTGGGAGATAAGGAAGGAGAGAGTGTGAAAATTGC 372
||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 238 TTGTTTCCCTGAGAACTTCTCCTTTGTGGGAAATAAAGAAGGAGAGAGTGTGAAAATTGC 297
Query 373 TGAACCATTAGATGGCCCAGTGATGGAACGGTATTGCTCTCTCGCCAGGGATTCAAATAT 432
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 TGAACCATTAGACGGGCCAGTGATGCAACGGTATTGCTCTCTCGCCAGGGATTCAAATAT 357
Query 433 ATGGTTGTCTCTTGGAGGTTTTCAAGAGAGATTTGATGATACTCATTTGTGTAATACACA 492
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGTTTTCTCTTGGAGGCTTCCAAGAGAGATTTGATGATACTCATTTGTGTAATACACA 417
Query 493 TGTTGTGATCGATGATGCTGGAATGATCCG-AGACACTTATCAGAAAATGCATTTGTTTG 551
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 418 TGTTGTGATCGATGATGCTGGAATGATCCGCA-ACACTTATCAGAAAATGCATTTGTTTG 476
Query 552 ATGTTGATGTTCCTGGTGGAAGCTCGTACAAAGAAAGCAGCTTTACAGTTCCAGGGACAA 611
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 477 ATGTTGATGTTCCTGGTGGAAGCTCATACAAGGAAAGCAGCTTTACGGTTCCAGGGACAA 536
Query 612 AGATTGTTTCCGTAGACAGCCCTGTCGGGCGCTTAGGCCTTACTGTATGCTACGATTTGA 671
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 537 AGATTGTTTCCGTAGACAGCCCTGTTGGGCGGTTAGGCCTTACTGTATGCTACGATTTGA 596
Query 672 GGTTCCCTAAGATATATCAGCAACTGAGATTTGAACAGAAAGCTCAGGTTTTACTAGTAC 731
|||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 597 GGTTTCCGAAGATATATCAGCAACTGAGATTTGACCAGAAAGCTCAGGTTTTACTGGTAC 656
Query 732 CATCAGCTTTCACCAAGGTCACTGGGGAGGCACACTGGGAGATTCTTCTTCGAGCCCGAG 791
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 CGTCAGCTTTCACCAAGGTCACTGGGGAGGCTCACTGGGAGATTCTTCTTCGAGCCCGAG 716
Query 792 CAATTGAAACTCAATGTTATGTCATAGCTGCTGCTCAAGCAGGAAAGCATAATGAGAAAA 851
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 CAATTGAAACGCAATGTTATGTCATAGCTGCTGCTCAAGCTGGAAAGCATAATGAGAAAA 776
Query 852 GAGAAAGTTATGGTGACACACTGATCATTGATCCGTGGGGAACTGTAGTTGGAAGGTTAC 911
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 777 GAGAAAGTTATGGTGACACACTGATCATTGATCCGTGGGGAACTGTGGTCGGAAGGTTAC 836
Query 912 CTGATCGTGTTTCGACCGGCATTGTCGTGGCAGATATTGATTTTTCATTGATTGACTCAG 971
| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 837 CCGATCGTGTTTCGACTGGCATTGTTGTGGCAGATATTGATTTTTCACTGATTGACTCGG 896
Query 972 TGAGAACAAAAATGCCAATAGATAAGCAACGAGTCTCAATAGATCTCTGATGAAACCATT 1031
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 897 TGAGAACAAAAATGCCAATAGATAAGCAACGGGTCTCGCTAGATCTCTGATGAACCCATT 956
Query 1032 GGTGTTG 1038
|||||||
Sbjct 957 GGTGTTG 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5