BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08810.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489778 jgi|Araly1|489778|fgenesh2_kg.6__2912__AT4G08810.1 2512 0.0
> Ahg489778 jgi|Araly1|489778|fgenesh2_kg.6__2912__AT4G08810.1
Length=1836
Score = 2512 bits (1360), Expect = 0.0
Identities = 1679/1827 (92%), Gaps = 46/1827 (3%)
Strand=Plus/Plus
Query 78 ATGAAGGAATCAGATCTAACCACCGAACCAATCGCACAAAATCTAATCAAGCTAATAAGC 137
||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct 24 ATGAAGGAATCAGATCTAACCACCGAACCAATCGCTCAGAATCTAATCAAGCTTATCAGC 83
Query 138 AATGTCTGTTTCTCAGTCTTCGTTTTCACAGTTCTCATCTTCACAGTAATCGCAGTAACT 197
||||||||||||||||||||||| |||||||||||||| ||||||||||| || || |||
Sbjct 84 AATGTCTGTTTCTCAGTCTTCGTCTTCACAGTTCTCATATTCACAGTAATTGCCGTCACT 143
Query 198 TACCAACCACCAGATCCATGGCTTGAATCTGCTCCAGCACTCACCAAACTCCTAACCGAA 257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 TACCAACCACCAGATCCATGGCTTGAATCTGCTCCAGCTCTCACCAAACTCCTAACCGAA 203
Query 258 ACCGAAAACGCAACTTTCAAAATCGACGGTTCGATTCTCAAAACCGGCGAAGATCTCGCT 317
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 204 ACCGAAAACGCATCTTTCAAAATCGACGGTTCGATGCTCAAAACCGGTGAAGATATCGCT 263
Query 318 TCATCTCCGTCATCATCACCTCCGTCGAACTCC-ACAGAGCAAGTCACGGAGGCGACGAT 376
|| | | | | || | || || | |||| | | || ||| ||||||||||||||
Sbjct 264 TC-T-T-C-T--TC-T--CCGGTTTC-AGCTCCGGCGGGGCTAGTTACGGAGGCGACGAT 313
Query 377 TGAGAAATCCGAGGCGAAAATCGGTAATATGACTGTGAAGAA--C-TC-TAT-A-GA-T- 428
|||||||||||||| || |||||| |||||||| |||||||| | || | | | | |
Sbjct 314 TGAGAAATCCGAGGAGAGAATCGGGAATATGACGGTGAAGAACTCTTCTTCTGATTATTC 373
Query 429 TGT-GA---TGAGGATTTGAAGATTGTGAATTGTTCTGATCCGAGAGTTTTAGTTGCTGT 484
| | || ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 374 TATGGATTGTGATGATTTGAAGATTGTGAATTGTTCGGATCCGAGAGTTTTAGTTGCTGT 433
Query 485 TGAGAGGTTTAATTTGAAGGTTTTTAAATCTATTGTGTTCTTAGAGTACGAAACTCCGGT 544
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 434 TGAAAGGTTTAATTTGAAGGTTTTTAAGTCTATTGTGTTCTTAGAGTACGAAACTCCGGT 493
Query 545 TAACGGATCGAAACTAGACGAATGCGATGTTTCTTGGAGGTTTAGGAATAAGAAGGAGAA 604
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 494 TAACGGATCGAATTTAGACGAATGCGATGTTTCGTGGAGGTTTAGGAATAAGAAGGAGAA 553
Query 605 GTCATGGAGGAGATACAGAGATTTCAGGAGGTTTAGGTTTGGATTTGGTGAGAATTGTAC 664
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 554 GTCATGGAGGAGATATAGAGATTTCAGGAGGTTTAAGTTTGGATTTGGTGAGAATTGTAC 613
Query 665 TTATAAAGTGTTTCATACTAGTGGTTGGCATTCTGGTGTTAATGCTCGTAGGCCTAGGAT 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTATAAAGTGTTTCATACTAGTGGTTGGCATTCTGGTGTTAATGCTCGTAGGCCTAGGA- 672
Query 725 TAGTAGACCGAGCTCGAGT-----C----GA--GGA-G--CT-CGCGGTGGTGATTCGGA 769
| |||||||||||||||| | || | | | | || ||||||||| | ||
Sbjct 673 T--TAGACCGAGCTCGAGTAGAGGCGGTGGACCGAAGGTTGTGCGTGGTGGTGATCCCGA 730
Query 770 GATTAATGATACGATTCCGACTCTTGGTTCGCAGACGAGTTTCCGGAGAGGGAAGTATTT 829
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 731 GATTAATGATACGATTCCGACTCTTGGTTCGCAGACGAATTTCAGGAGAGGGAAGTATTT 790
Query 830 GTATTATTCGCGGGGTGGTGATTATTGTAAGGGTATGAATCAGTATATGTGGAGTTTCTT 889
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 791 GTATTATTCGCGGGGAGGTGATTATTGTAAGGGGATGAATCAGTATATGTGGAGTTTCTT 850
Query 890 GTGTGGTTTAGGTGAAGCAATGTATTTGAATAGGACTTTTGTGATGGATTTGAGTTTGTG 949
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 851 GTGTGGTTTAGGTGAAGCAATGTATTTGAATAGGACTTTTGTTATGGATTTGAGTTTGTG 910
Query 950 TTTGTCTTCGAGTTATAGTTCTAAGGGGAAAGATGAGGAAGGTAAGGATTTTCGGTATTA 1009
||||||| | ||||||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 911 TTTGTCTGCAAGTTATAGTTCCACGGGGAAGGATGAGGAGGGTAAGGATTTTCGGTATTA 970
Query 1010 TTTTGATTTCGAGCATCTTAAGGAGACGGCTTCGATTGTTGAAGAGGGTGAGTTCTTGAG 1069
|||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 971 CTTTGATTTCGAGCATCTTAAAGAAACGGCTTCTATTGTTGAAGAGGGTGAGTTTTTGAG 1030
Query 1070 AGATTGGAAGAAATGGAATCGGTTGCATAAACGGAAAGTTCCTGTTAGGAAGGTTAAGAC 1129
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1031 AGATTGGAAGAAATGGAATCGGTCGCATAAACGGAAAGTTCCTGTAAGGAAGGTTAAGAC 1090
Query 1130 GCATAGAGTGTCGCCTTTGCAGCTTAGTAAAGATAAGAGTACGATTATATGGAGGCAGTT 1189
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GCATAAAGTGTCGCCTTTGCAGCTTAGTAAAGATAAGAGTACGATTATATGGAGGCAGTT 1150
Query 1190 TGATACTCCTGAGCCTGAAAACTATTGGTATAGAGTTTGTGAAGGGCAAGCATCGAAGTA 1249
|||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1151 TGATACTCCTGAACCTGAAAACTATTGGTATAGAGTGTGTGAAGGGCAAGCGTCAAAGTA 1210
Query 1250 TGTTGAGAGGCCGTGGCATGCGTTGTGGAAGTCGAAGAGGTTGATGAATATTGTCTCTGA 1309
||| |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||
Sbjct 1211 TGTGGAGAGGCCGTGGCACGCATTGTGGAAATCGAAGAGATTGATGAACATTGTCTCTGA 1270
Query 1310 GATTAGTGGGAAAATGGACTGGGATTTTGATGCTGTTCATGTGGTTAGAGGCGAGAAAGC 1369
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1271 GATTAGTGGGAAAATGGACTGGGACTTTGATGCGGTTCATGTGGTTAGAGGCGAGAAAGC 1330
Query 1370 GAAGAACAAGAAGCTATGGCCACATTTGGATGCAGACACATGGCCTGATGCGATATTGAC 1429
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1331 GAAGAACAAGAAGCTTTGGCCACATTTGGATGCAGACACATGGCCTGATGCAATATTGAC 1390
Query 1430 CAAACTTAAAGGATTGGTTCAGGTGTGGAGGAATTTGTACGTTGCAACTAATGAACCGTT 1489
|||||| |||||| |||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1391 CAAACTGAAAGGACTGGTTCAGGTGTGGAGGAATTTGTACGTCGCCACCAATGAACCGTT 1450
Query 1490 TTATAATTACTTTGACAAGTTGAGGTCTCAGTACAAGGTTCACTTGCTTGATGACTATAG 1549
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1451 CTATAATTACTTTGACAAATTGAGGTCTCAGTACAAGGTTCACTTGCTTGATGACTACAG 1510
Query 1550 CTACTTGTGGGGAAATAAGAGTGAATGGTACAATGAGACTAGTCTCTTGAACAATGGGAA 1609
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1511 CTACTTGTGGGGGAACAAGAGTGAGTGGTACAATGAGACAAGTCTCTTGAACAATGGTAA 1570
Query 1610 ACCAGTTGAGTTTGATGGGTACATGAGAGTAGCTGTTGATACAGAGGTGTTTTATAGAGG 1669
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 ACCAGTTGAGTTTGATGGATACATGAGAGTAGCTGTTGATACAGAGGTGTTTTATAGAGG 1630
Query 1670 AAAGACTCGCGTCGAGACGTTCTATAACCTTACCACGGACTGCAAAGACGGGATCAATAC 1729
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 AAAGACTCGTGTTGAAACGTTCTATAACCTTACCACGGACTGCAAAGACGGGATCAATAC 1690
Query 1730 ATGCT-AAATTGATCATTCAGGTTGT-G--ATATGTTTTCATTGTTTTATTTGTTTGTGT 1785
||||| |||||||||| ||||||||| | ||||||||||||||||| |||||||| |||
Sbjct 1691 ATGCTGAAATTGATCAGTCAGGTTGTTGTTATATGTTTTCATTGTTTAATTTGTTTTTGT 1750
Query 1786 ATCAAATTCAGTTATGCTTGTGTTGTTTACCTTGTGTTCTACTAGCTATTGAAGAGTGTA 1845
||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1751 ATCCTATTCAATTATGCTTGTGTTGTT-ACCTTGTGTTCTACTAGCAATTGAAGAGTGTA 1809
Query 1846 CGTAACGTTTACATTTTTTGATTCATA 1872
|||||||||||||||||||||||||||
Sbjct 1810 CGTAACGTTTACATTTTTTGATTCATA 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5