BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08840.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895014 jgi|Araly1|895014|Al_scaffold_0006_3010 1892 0.0
> Ahg895014 jgi|Araly1|895014|Al_scaffold_0006_3010
Length=1623
Score = 1892 bits (1024), Expect = 0.0
Identities = 1447/1636 (88%), Gaps = 90/1636 (6%)
Strand=Plus/Plus
Query 1 ATGGATTTTGGGTTTTTTCCTGGTGATTTGAGACAACGAGGTTCATTTACTGATCTGGGT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGATTTTGGGTTTTTTCCTGGTGATTTGAGACAAAGAGGTTCATTTACTGATCTGGGT 60
Query 61 TTTAATGGGTTTCCTCTAA---CTTC--C-TCTGTCTCTAAT---GGATTTCACTTTTCC 111
||| |||||||||| ||| |||| | |||||||||||| |||||||||||||||
Sbjct 61 TTTGGTGGGTTTCCTTTAACTTCTTCTTCTTCTGTCTCTAATGGAGGATTTCACTTTTCC 120
Query 112 GGTGACCGTACAACAAACCCTTTTCTTAACCTTCGAAAGCTTGATACGACGTCGTTAATG 171
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 121 GGTGACCGTACAACAAACCCTTTTCTGAACCTTCGAAAGCTTGATACGACGGCGTTAATG 180
Query 172 GCGGATGGTGTTGATATGGGTTTGTGTCAAAACCTCTCTAAAATGAGTATCTCCGATGAA 231
|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 181 GCGGATGGTGGTGATATGGGTTTGTGTCAAAACCTCAGTAAAATGAGTATTTCCGATGAA 240
Query 232 AGAAGCAAtttttttAACCACTCTAGTTTTTCCGGCTATGGATGTTACCAAGGTCGTGAG 291
||||||| |||||| ||||||||| ||||||||||||||||||||| | |||| | |
Sbjct 241 AGAAGCAGTTTTTTCAACCACTCTGGTTTTTCCGGCTATGGATGTT--CTAGGT--T-TG 295
Query 292 AGCTCCTTTCATGGTGA-AGCTTCT-A-GCTCTATGC--GTGGTTTTGTTGGTTATGGTG 346
| || | | |||| ||||| | | | | | || ||||||||||||||||||||
Sbjct 296 A---CCAAGC-TCGTGAGAGCTT-TAATG-GCGAAGCTTCTGGTTTTGTTGGTTATGGTG 349
Query 347 ATGTTCATAGATTCGAACAAGATCTGAGAGT-A-A---------G-A------G--C-GA 385
||||||||||||||||||| ||||||||||| | | | | | | ||
Sbjct 350 ATGTTCATAGATTCGAACAGGATCTGAGAGTGAGAGGTCGGCGTGAAGGTTTTGCACAGA 409
Query 386 GCTTTCATGGTGAATCTGCTATGAGTAGTTATGTTGGTGATGGTAGTGATTATCATAGAC 445
|||||||||||| |||| |||||||| |||||||||||||| | |||||||||||||||
Sbjct 410 GCTTTCATGGTGGATCTTCTATGAGTGGTTATGTTGGTGAT-G--GTGATTATCATAGAC 466
Query 446 TCAGATTTCTTGCCTTACAAGAAGCTTCTAACCCTAACCCTAG--------AT------- 490
||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 467 TCAGATTGCTTGCCTTACAAGAAGCTTATAACCCTAACCCTAGCTTTAACCATCACAGAG 526
Query 491 GTTTTACAGAG---AACATGTCTCTTCTTAACAGAGATTACATGTTGGAGTTGGAGCATT 547
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 527 GTTTTACAGAGAACAACATGTCTCTTCATAACAGAGATTACATGTTAGAGTTGGAGCATT 586
Query 548 TCAATCAACAAATCCGGCGAGACTTTTCTCTAGTTCCACAGAAATCTCCACTAGCTTTTC 607
|||||||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||| |
Sbjct 587 TCAATCAACAAATCCGACGAGACTTTTCACTACTTCCACAGAAATCTCGATTAGCTTTCC 646
Query 608 ATGAAGAGAGGATCTTGCCACCATTTTCAGCCATGGGAGGTTCTAGAGAGCTTGATGGTT 667
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 ATGAAGACAGGATCTTTCCACCATTTTCAGCCATGGGAGGTTCTAGAGAGCTTGAGGGTT 706
Query 668 CTGCTAA-A-----TGT-ATGAAGA-ACA-AGGA--AGACTCACTAGATCTTGCTTCAAT 716
|| |||| | | | | ||||| || ||| | | | |||||||||||||| ||
Sbjct 707 CTACTAAGACGTTTTTTAAGGAAGATTCACTGGATTTG-C-CTCTAGATCTTGCTTCTAT 764
Query 717 GGTTGATAGCTATGGTTCTGTGTACTTAATGGCAAAAGATCAACTGGGTTGTCGATTATT 776
|||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 765 GGTTGATATCTATGGTTCTGTGTGCTTAATGGCAAAAGATCAATTGGGTTGTCGATTCTT 824
Query 777 ACAGAAGTTTGT-AGACGAAGGAA-ATTTTGTTGATGTGATGATTATATTCAAGGAAGTG 834
|||||||||||| || ||||||| | ||||||||||| |||||| |||| ||||||||
Sbjct 825 ACAGAAGTTTGTGGGA-GAAGGAAGA-TTTGTTGATGTAATGATTGTATTTAAGGAAGTC 882
Query 835 ATTAATAATGTCATTGAGCTTGGAACGGATCCGTTTGGTAACTATCTTATCCAGAAGCTT 894
|||||| || || ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 883 ATTAATCATATCGCTGAGCTTGGAATAGATCCGTTTGGTAACTATTTTATCCAGAAGCTT 942
Query 895 ATTGAAGTCTGCAATGAAGAACAAAGAACTCAGATTCTCATTAGGTTGACTTCAAAACCT 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTTGAAGTCTGCAATGAAGAACAAAGAACTCAGATTCTCATTAGGTTGACTTCAAAACCT 1002
Query 955 GGACTTCTTGTCAAAATCTCCATCAACAATTATGGGACACGAGTGGTGCAGAAGTTGATT 1014
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GGACTTCTTATCAAAATCTCCATCAACAATTATGGGACACGAGTGGTGCAGAAGTTGATT 1062
Query 1015 GAGACTGTGACTACAAAGGAGCAAATCAGTCTGGTTAAGTCAGCTCTTGTACCGGGATTT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GAGACTGTGACTACAAAGGAGCAAATCAGTCTGGTTAAGTCAGCTCTTGTACCGGGATTT 1122
Query 1075 CTCTCTTTGTTTAGAGAATTAAATGGAAACCATGTGATACTAAATTGCTTGAAATTCTTT 1134
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CTCTCTCTGGTTAGAGAATTAAATGGAAACCATGTGATACTAAATTGCTTGAAATTCTTT 1182
Query 1135 AGTCCTAATGATAACAAGTTCATTTTGGAGGCTGCTACTAAGTTCTGCATAGAGATTGCG 1194
||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 1183 GGTCCTAATGATAACAAGTTCATTTTAGAGGCTGCTATTAAGTTCTGCACAGAGATTGCG 1242
Query 1195 ACT-ACTCGCCATGGATGTTGTGTGCTTCAACGCTGCGTTTCGTACTCGGTTGGGGAGCA 1253
||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1243 ACTCA-TCGCCATGGATGTTGTGTGCTTCAACGCTGCGTTTCATACTCGGTTGGGGAGCA 1301
Query 1254 ACATGAGAAGCTTGTTGATGAAATATCCAGAAACTCTCTTCTCCTTGCTCAAGACCCTTT 1313
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ACATGAGAAGCTTGTTGGTGAAATATCCAGAAACTCTCTTCTCCTTGCTCAAGACCCTTA 1361
Query 1314 CGGGAACTATTTGGTGCAATACATAATAGAGAAGAAGGTTGGAGGAGTGAATGT-ACTGT 1372
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1362 CGGGAACTATGTGGTGCAATACATAATAGAGAAGAAGGTGGGAGGAGTGAATGTGA-TGT 1420
Query 1373 TTGAGCTAAGAGGGAATTATGTGAAGTTAGCTACACAGAAGTTTGGTAGCCATGTGGTTG 1432
|||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1421 TTGAGCTACGAGGGAATTACGTGAAATTAGCTACACAGAAGTTTGGTAGCCATGTGGTGG 1480
Query 1433 AGAAATGTC-TCAGGTATTATCCAGAGAGCAGATCTCAGATTGTGAATGAACTCGTCTCT 1491
||||||| | |||| | |||||| || |||||||||||||||||| | || |||||||||
Sbjct 1481 AGAAATG-CATCAGATTTTATCCCGAAAGCAGATCTCAGATTGTGCACGAGCTCGTCTCT 1539
Query 1492 GTTCTAAACTTCGGATATCTTCTTCAAGACCCTTATGCTAATTACGTGATCCAGTGTGCT 1551
|||| |||||||| | | ||| ||||||||||||| ||||| ||||| ||||| | ||||
Sbjct 1540 GTTCCAAACTTCGAACAGCTTGTTCAAGACCCTTACGCTAACTACGTTATCCAATCTGCT 1599
Query 1552 CTATCGAAAACCAAGG 1567
||||| ||||||||||
Sbjct 1600 CTATCCAAAACCAAGG 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5