BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G08868.1

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920218 jgi|Araly1|920218|scaffold_101499.1                       73.1    2e-12


> Ahg920218 jgi|Araly1|920218|scaffold_101499.1
Length=381

 Score = 73.1 bits (39),  Expect = 2e-12
 Identities = 93/117 (79%), Gaps = 12/117 (10%)
 Strand=Plus/Plus

Query  89   GGTCGACATGGTCGCCGGTGAGATCTATCTTC-AGAATC-TGGTTGCTCG-ATTTTCCGG  145
            |||||||||||||||||||||||||||| ||| | || | |||  ||||| |||| ||| 
Sbjct  14   GGTCGACATGGTCGCCGGTGAGATCTAT-TTCCAAAA-CGTGGAAGCTCGGATTT-CCGT  70

Query  146  TAACGGTGGCTCCAACTCTAATATATC--GTCTCTCTCACCT-CCGGGTGAAGACAT  199
            ||| | ||||| |||||| ||  | ||  || | |||||||| |||| ||| |||||
Sbjct  71   TAAAGATGGCTACAACTCGAACCTCTCCAGT-T-TCTCACCTTCCGG-TGATGACAT  124



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15910880613


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5