BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08869.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942680 jgi|Araly1|942680|scaffold_603224.1 267 4e-71
Ahg942584 jgi|Araly1|942584|scaffold_603128.1 261 2e-69
Ahg894920 jgi|Araly1|894920|Al_scaffold_0006_2916 261 2e-69
Ahg942587 jgi|Araly1|942587|scaffold_603131.1 169 1e-41
Ahg942684 jgi|Araly1|942684|scaffold_603228.1 163 5e-40
Ahg942683 jgi|Araly1|942683|scaffold_603227.1 163 5e-40
> Ahg942680 jgi|Araly1|942680|scaffold_603224.1
Length=322
Score = 267 bits (144), Expect = 4e-71
Identities = 241/287 (84%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACAATTATTTTGTTTTTAACTCTTCTAGTCATTTCTTCCTCATGTACATCGATA 60
||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||
Sbjct 21 ATGAAGACAATTATTTTGTCTTTAACTTTTCTAGTCCTTTTTTCCTCATGTACATCAATA 80
Query 61 ATTA-CCAAAACA-ATGAATTCAAAAGAGACAACATATCTTGATAGTCCAGCAGTGAGTC 118
|||| ||||| | | |||| | |||||| ||||| |||||| | |||| || ||| |
Sbjct 81 ATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATTAGCGAGCC 138
Query 119 CTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAGGCGTA 177
||||||| |||| ||| |||||||||||||||||| || || ||| ||| ||||||||||
Sbjct 139 CTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAGGCGTA 197
Query 178 ATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATC-TT-GCTA 235
||| ||||||||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 198 ATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTA-CATTCG-TA 255
Query 236 GGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| |||| || |||| | |||||||||| || ||||| || ||||||
Sbjct 256 GTTGTACAAGATTTATATGTCGTTGCAGTATTAGTGGCATTAAATAA 302
> Ahg942584 jgi|Araly1|942584|scaffold_603128.1
Length=322
Score = 261 bits (141), Expect = 2e-69
Identities = 240/287 (84%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACAATTATTTTGTTTTTAACTCTTCTAGTCATTTCT-TCCTCATGTACATCGAT 59
||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||| ||
Sbjct 21 ATGAAGACAATTATTTTGTTTTTAACTTTTCTGGTCCTTT-TGTCCTCATGTACATCAAT 79
Query 60 AATTA-CCAAAACA-ATGAATTCAAAAGAGACAACATATCTTGATAGTCCAGCAGTGAGT 117
||||| ||||| | | |||| | |||||| ||||| |||||| | |||| ||| |||
Sbjct 80 AATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATCAGCGAGC 137
Query 118 CCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAGGCGT 176
|||||||| |||| ||| |||||||||||||||||| || || ||| ||| |||||||||
Sbjct 138 CCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACATTCTCTTCGTCAAGGCGT 196
Query 177 AATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTT-GCTA 235
|||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 197 AATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATTCG-TA 255
Query 236 GGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 256 GTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 302
> Ahg894920 jgi|Araly1|894920|Al_scaffold_0006_2916
Length=282
Score = 261 bits (141), Expect = 2e-69
Identities = 240/287 (84%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACAATTATTTTGTTTTTAACTCTTCTAGTCATTTCT-TCCTCATGTACATCGAT 59
||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||| ||
Sbjct 1 ATGAAGACAATTATTTTGTTTTTAACTTTTCTGGTCCTTT-TGTCCTCATGTACATCAAT 59
Query 60 AATTA-CCAAAACA-ATGAATTCAAAAGAGACAACATATCTTGATAGTCCAGCAGTGAGT 117
||||| ||||| | | |||| | |||||| ||||| |||||| | |||| ||| |||
Sbjct 60 AATTATTCAAAA-AGCT-AATTTAGAAGAGAGAACATCTCTTGACAATCCATCAGCGAGC 117
Query 118 CCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAGGCGT 176
|||||||| |||| ||| |||||||||||||||||| || || ||| ||| |||||||||
Sbjct 118 CCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACATTCTCTTCGTCAAGGCGT 176
Query 177 AATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTT-GCTA 235
|||| ||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 177 AATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATTCG-TA 235
Query 236 GGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 236 GTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 282
> Ahg942587 jgi|Araly1|942587|scaffold_603131.1
Length=199
Score = 169 bits (91), Expect = 1e-41
Identities = 151/180 (84%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 105 TCCAGCAGTGAGTCCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTT 163
|||| ||| ||| |||||||| |||| ||| |||||||||||||||||| || || |||
Sbjct 2 TCCATCAGCGAGCCCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTC 60
Query 164 TTCTTCAAGGCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTA 223
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGTCAAGGCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTA 120
Query 224 AAAATCTT-GCTAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| || || | ||| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 121 AGTATATTCG-TAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 179
> Ahg942684 jgi|Araly1|942684|scaffold_603228.1
Length=199
Score = 163 bits (88), Expect = 5e-40
Identities = 144/171 (84%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 114 GAGTCCTTCAATTGATC-AATATCTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAG 172
||| |||||||| |||| ||| |||||||||||||||||| || || ||| ||| |||||
Sbjct 11 GAGCCCTTCAATGGATCAAAT-TCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAG 69
Query 173 GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTT- 231
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 70 GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATTC 129
Query 232 GCTAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| ||| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 130 G-TAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 179
> Ahg942683 jgi|Araly1|942683|scaffold_603227.1
Length=199
Score = 163 bits (88), Expect = 5e-40
Identities = 144/171 (84%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 114 GAGTCCTTCAATTGATCAATAT-CTAGTGGATATACATCTCGGGCACTCTTTTCTTCAAG 172
||| |||||||| |||||| || ||||||||||||||||| || || ||| ||| |||||
Sbjct 11 GAGCCCTTCAATGGATCAA-ATGCTAGTGGATATACATCTTGGACAGTCTCTTCGTCAAG 69
Query 173 GCGTAATGAGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAAAATCTT- 231
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 70 GCGTAATGGGTTTTTGTTATGACTGCGGAAAAGCTTGTTTTAGAAGGGGTAAGTATATTC 129
Query 232 GCTAGGTGTAAAAAATTTGTTTGTCGTTGCACTAAGAGTGGTATCAAATAA 282
| ||| |||| || |||| |||||||||| || |||| || ||||||
Sbjct 130 G-TAGTTGTACAAGATTTAAATGTCGTTGCAGTATTAGTGACATTAAATAA 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5