BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08870.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1 1820 0.0
Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1 1181 0.0
> Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1
Length=1234
Score = 1820 bits (985), Expect = 0.0
Identities = 1113/1173 (95%), Gaps = 16/1173 (1%)
Strand=Plus/Plus
Query 2 ACTTATACCTCACTGACTTACTACAAATCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 61
|||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||
Sbjct 1 ACTTATACCTCACTGAGTTAC-A-ATTTCAGATATGTGGAAGATTGGGCAGAGAGGAGTT 58
Query 62 CCCTATTTCCAGAGACTCATTGCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 121
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 59 CCCTATTTCAAGAGACTCATTTCTGCGCCGTTCACGACCTTGCGGTCCTTGCCAACTTCT 118
Query 122 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGGTCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGG 178
Query 182 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCAAAACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTT 238
Query 242 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTTGGAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCT 298
Query 302 CATGTAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAG 361
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 299 CATGTAAGGGAAGCTATTTGGTGTGGTAGCACAAATTCCACCACTGAAGAAGGGAAGGAG 358
Query 362 CTAAAAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAA 421
|||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 CTAAAAGATCCACGGGTTTTAAGTGATGTTGGTGATATTCCGGTACAAGAAATTAGAGAA 418
Query 422 ATGGGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATG 481
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 419 ATGGGGGTTGATGATGATAGACTCATGAATGTAGTAAGTGATTCTGTGAAGCTGGTGATG 478
Query 482 GAAGAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTT 541
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 GAAGAGGAACCATTGCGCCCGCTGGTCATTGGTGGAGACCATTCCATATCTTATCCTGTT 538
Query 542 GTGAGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 601
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGAGAGCGGTTTCGGAGAAACTGGGAGGACCCGTGGATATTCTTCATCTTGATGCACAT 598
Query 602 CCCGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 661
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCAGATATATATGACCGTTTCGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGT 658
Query 662 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAA 721
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 ATCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCGATAAACAAG 718
Query 722 GAAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 781
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 719 GAAGGACGGGAACAAGGCACGAAGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCA 778
Query 782 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAAGATCGCCAAATGTTGGAAAACTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 838
Query 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 839 TCGATCGATGTTGACTGTCTCGATCCAGGATTTGCACACGGAGTGTCCCACTTCGAACCA 898
Query 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGATTTGGTG 961
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 899 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATCTTACATAACCTTCAAGGAGATTTAGTG 958
Query 962 GGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAATG 1021
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 959 GGGGCTGATGTTGTTGAGTACAACCCGCAGCGTGATACCGCTGATGACATGACGGCAATG 1018
Query 1022 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAATTTAAATGGTA 1081
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1019 GTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATAAATTTGAATCGTA 1078
Query 1082 -----CT-TT--GGAGTTTAATCGT-TGAAGCTTGTAATAT-GCAATAAGTGTGGTCTCA 1131
|| || ||||||| ||||| | |||| |||| ||| | ||||||||||| | |
Sbjct 1079 TTTTACTATTTTGGAGTTTCATCGTGT-AAGCCTGTATTATTG-AATAAGTGTGGCCCCT 1136
Query 1132 TAGACATG-GTATCGAATAAGCTTAATATCAAT 1163
| ||| | | |||||||| |||||||||||||
Sbjct 1137 TGGACG-GAGCATCGAATATGCTTAATATCAAT 1168
> Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1
Length=1200
Score = 1181 bits (639), Expect = 0.0
Identities = 848/950 (89%), Gaps = 10/950 (1%)
Strand=Plus/Plus
Query 126 TCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAA 185
|||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 115 TCGAGAAAGGGCAAAATCGTGTCATTGATGCTTCGTTAACTCTCATTCGTGAAAGGGCAA 174
Query 186 AACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTG 245
|||| ||||||||||||||||| || |||| ||||| |||||| ||||| |||||||||
Sbjct 175 AACTAAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTG 234
Query 246 GAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATG 305
|||||||||||||||||||||||||||||||| |||| || || || |||||||||| |
Sbjct 235 GAGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTA 294
Query 306 TAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAGCTAA 365
| || ||||||||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct 295 TTAGAGAAGCTATTTGGTGTGGTAGTACAAACTCTGCAACTGAAGAAGGGAAGGAGTTGA 354
Query 366 AAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAAATG- 424
| |||||||| ||||||| ||||||||| ||| |||| |||||||||||||||| | ||
Sbjct 355 AGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCAGTACAAGAGATTAGAG-ATTGT 413
Query 425 GGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATGGAA 484
|||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||
Sbjct 414 GGGGTTGATGATGATAGACTGATGAATGTAATAAGTGAATCTGTGAAGTTGGTGATGGAT 473
Query 485 GAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTTGTG 544
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 474 GAGGAACCATTGCGCCCGCTGGTCCTAGGTGGAGACCATTCTATATCTTATCCTGTTGTG 533
Query 545 AGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTT-CATCTTGATGCACATCC 603
||||| ||||| ||||| ||||||||||| ||||| ||| || |||||||||||||||||
Sbjct 534 AGAGCGGTTTCTGAGAAGCTTGGAGGACCTGTGGACATT-TTGCATCTTGATGCACATCC 592
Query 604 CGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTAT 663
||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 593 GGATATATATGATTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTAT 652
Query 664 CATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAAGA 723
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||
Sbjct 653 CATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGA 712
Query 724 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 772
Query 784 AGATCG-CCAAATGTTGGAAAA-CTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841
|||||| |||| |||||||||| || |||||||||||||||||||||||| || || |||
Sbjct 773 AGATCGTCCAA-TGTTGGAAAATCT-GAAACTAGGGGAAGGAGTGAAGGGGGTATACATC 830
Query 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901
||||| || ||||||||||||||||||| ||| || | ||||||||||||| ||||||||
Sbjct 831 TCGATAGACGTTGACTGTCTCGATCCGGCATTTGCACCCGGAGTGTCCCACATCGAACCA 890
Query 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGAT-TTGGT 960
|||||||| |||||||| || ||||||||||| ||||| || ||||||| |||| ||| |
Sbjct 891 GGAGGTCTCTCTTTCCGTGATGTCCTTAACATCTTACATAATCTTCAGGCAGATGTTGTT 950
Query 961 GGGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAAT 1020
|||| |||||||||| |||| ||| || || |||||||| | ||| | |||||| |||||
Sbjct 951 GGGG-CTGATGTTGTCGAGTTCAACCCGCAACGTGATACTGTTGACGGCATGACAGCAAT 1009
Query 1021 GGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAA 1070
||| || |||||| |||||||||| ||||||| ||||| || |||||||
Sbjct 1010 GGTTGCTGCTAAGCTTGTTAGAGAATTAGCCGCGAAAATCTCGAAATGAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5