BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08878.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489725 jgi|Araly1|489725|fgenesh2_kg.6__2859__AT4G08878.1 1092 0.0
Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1 968 0.0
> Ahg489725 jgi|Araly1|489725|fgenesh2_kg.6__2859__AT4G08878.1
Length=705
Score = 1092 bits (591), Expect = 0.0
Identities = 663/698 (95%), Gaps = 3/698 (0%)
Strand=Plus/Plus
Query 1 ATGGTACCATTTCACGGCGGTTGTAGTCGCCGGTATGGG-TTTTTCACAGACTCATATGA 59
||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 6 ATGGTACCACTTCACGGCTGTTGTAGTCGCCGGTATGGGTTTTTTCACAGACTCGTATGA 65
Query 60 TCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 125
Query 120 CTCCTCCTCTCCTGGAAGCCTCCCCGACGGCATCTCTGTAGCCGTGAGTGGTGTGGCCTT 179
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct 126 CTCCTCCTCTCCTGGAAGCCTCCCTGACGGCATCTCTGCCGCCGTGAGCGGTGTAGCCTT 185
Query 180 CGCCGGAACGTTTCTCGGACAGATATTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAA 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 186 CGCCGGAACGTTTCTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAA 245
Query 240 GAGAGTCTATGGTTTAACACTCTTGATCATGACTATTTGCTCCATTGCTTCTAGTCTTTC 299
||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 246 GAGAGTCTATGGTTTGACACTCTTGATCATGACCATTTGCTCCATTGGTTCTGGTCTTTC 305
Query 300 -CTTTGGGAAGGACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTGGCTCG 358
||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTT-GGAAACGATCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTGGCTCG 364
Query 359 GGTTTGGCATTGGTGGTGACTATCCTCTCTCGGCTACGATCATGTTCGAGTACGCTAACA 418
|||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 365 GGTTTGGCATCGGTGGTGATTATCCTCTCTCGGCTACAATCATGTCCGAGTACGCTAACA 424
Query 419 AACGTACTCGCGGCGCGTTCATAGCATCGGTTTTTGCTATGCAAGGAGTTGGGATACTTG 478
|||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 425 AACGTACTCGAGGCGCGTTCATAGCAGCTGTTTTTGGTATGCAAGGAGTTGGGATACTTG 484
Query 479 CCGCAGGAGGGGTTTCTTTACTTGTCTCGTATCTTTTCGAGATTGAGTTTCCGTCTCGGG 538
|||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||
Sbjct 485 CCGCAGGAGGGGTTTCTTTACTTGTCTCGTATATTTTTGAGATTAAGTATCCGTCTCGGG 544
Query 539 CCTACATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGGAGGATCA 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CCTATATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGGAGGATCA 604
Query 599 TCCTAATGGTCGGAGCCTTACCGGCTCTCTTGACATACTATTGGCGTATGAAGATGCCTG 658
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 605 TCCTGATGGTCGGAGCCTTACCGGCTCTCTTGACATACTACTGGCGTATGAAGATGCCTG 664
Query 659 AAACCGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 696
|||| |||||||||||||||||||||||||||||||||
Sbjct 665 AAACTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 702
> Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1
Length=1557
Score = 968 bits (524), Expect = 0.0
Identities = 659/725 (91%), Gaps = 5/725 (1%)
Strand=Plus/Plus
Query 1 ATGGTACCATTTCACGGCGGTTGTAGTCGCCGGTATGGGTTT-TTCACAGACTCATATGA 59
||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||| ||
Sbjct 57 ATGGTACCACGTCACGGCGGTGGTAGTCTCCGGTATGGGTTTCTTCACAGACTCATACGA 116
Query 60 TCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCTCTTCGTGATATCTCTTATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 176
Query 120 CTCCTCCTCTCCTGGAAGCCTCCCCGACGGCATCTCTGTAGCCGTGAGTGGTGTGGCCTT 179
|||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 177 CTCCTCCTCTCCCGGAAGCCTCCCTGACGGTATCTCTGCCGCCGTGAGTGGTGTGGCCTT 236
Query 180 CGCCGGAACGTTTCTCGGACAGATATTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAA 239
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 237 CGCCGGAACGTTACTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTTGGACGTAA 296
Query 240 GAGAGTCTATGGTTTAACACTCTTGATCATGACTATTTGCTCCATTGCTTCTAGTCTTTC 299
||||||||||||||| ||||||||||||||||| || |||||||||| |||| |||||||
Sbjct 297 GAGAGTCTATGGTTTGACACTCTTGATCATGACCATATGCTCCATTGGTTCTGGTCTTTC 356
Query 300 -CTTTGGGAAG-GACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTGGCTC 357
||| || ||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 357 TCTT-GG-AAGAGACCCAAAAACTGTCATGGTAACTCTCTGCTTCTTCCGCTTCTGGCTC 414
Query 358 GGGTTTGGCATTGGTGGTGACTATCCTCTCTCGGCTACGATCATGTTCGAGTACGCTAAC 417
|||||||| || |||||||||||||||||||| ||||||||||||| |||||| || |||
Sbjct 415 GGGTTTGGTATCGGTGGTGACTATCCTCTCTCCGCTACGATCATGTCCGAGTATGCCAAC 474
Query 418 AAACGTACTCGCGGCGCGTTCATAGCATCGGTTTTTGCTATGCAAGGAGTTGGGATACTT 477
|||||||||||||| |||||||||||| ||||||| | |||||||||||||||||| |||
Sbjct 475 AAACGTACTCGCGGAGCGTTCATAGCAGCGGTTTTCGGTATGCAAGGAGTTGGGATCCTT 534
Query 478 GCCGCAGGAGGGGTTTCTTTACTTGTCTCGTATCTTTTCGAGATTGAGTTTCCGTCTCGG 537
|| ||||||| |||||| |||||||||||| | ||||||||| | ||||||| ||||||
Sbjct 535 GCTGCAGGAGCGGTTTCGTTACTTGTCTCGGCTGTTTTCGAGAGTAAGTTTCCATCTCGG 594
Query 538 GCCTACATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGGAGGATC 597
|| || ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct 595 GCTTATATATTGGACGGTGCAGCCTCCACTGTCCCACAAGCAGATTACGTGTGGAGGATC 654
Query 598 ATCCTAATGGTCGGAGCCTTACCGGCTCTCTTGACATACTATTGGCGTATGAAGATGCCT 657
||||| ||||| || |||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 655 ATCCTCATGGTAGGCGCCTTACCAGCTCTCTTGACTTACTACTGGCGGATGAAGATGCCC 714
Query 658 GAAACCGCTCGTTACACCGCTCTAGTCGCCAAGAACGCGGAGCAAGCGGCTTTGGATATG 717
||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 715 GAAACTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCGGAACAAGCAGCTTCGGATATG 774
Query 718 AATAA 722
| |||
Sbjct 775 ACTAA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5