BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08895.1
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489724 jgi|Araly1|489724|fgenesh2_kg.6__2858__AT4G08895.1 593 3e-169
Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1 307 4e-83
> Ahg489724 jgi|Araly1|489724|fgenesh2_kg.6__2858__AT4G08895.1
Length=399
Score = 593 bits (321), Expect = 3e-169
Identities = 373/399 (93%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGACCAAGCTAGGGTTTCCAAAGACGAGATTGGCTTGTTCTCCAAGAAATTCCTTTGTC 60
||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
Sbjct 1 ATGACCAAGCTAGGGTTTCCACAGACGAGTTTGGCTTGTTCTCCAAGAAATTTCTTTGCC 60
Query 61 GTCACGGATAGCTTCACCACCTTTGGATGGTTACCTTCGGCTAAAACCATGAACGCACTC 120
|||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 61 GTCACGGATATCTTCACCACCATAGGATGGTTACCTTCGGCTAAAACCATGAACGCAATC 120
Query 121 CAGGAGCTCTTCATGATCGTCAGGGCTCAAACCATAATCGCTTGTTGCAGTACAGTTCCT 180
|| ||||||| |||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 121 CAAGAGCTCTACATGATCGCCAAGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTCGT 180
Query 181 GCCGTACCGTACCACCATTGGACTTTACCAGCTAACCGGATTGGTTTTGTGATTTTCTAC 240
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 181 GCCATACCGTACCACCATTGGACTTTACCGGCTAACCGGATTGGTTTTGTGGTTTTCTAC 240
Query 241 TCTTTCACCTTTTTCTTTTCCAATTTTGGACCTAATGCAACTACGTTCATTGTCCCGGCT 300
||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCTCTCACCTTTTTCTTCTCCAATTTTGGACCTAACGCAACTACGTTCATTGTCCCGGCT 300
Query 301 GAGATTTTTCCGGCGAGGATTAGGTCGACTTGTCACGGTATCTCCGCGGCGTCAGGTAAA 360
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 301 GAGATTTTTCCGGCGAGGATTAGGTCTACTTGTCACGGTATCTCGGCTGCGTCGGGTAAA 360
Query 361 GCCGGTGCAATGGTCGGTTCTTTCGGGTTTGCTGCTTTG 399
|||||||| |||||||||||||||||||||||||| |||
Sbjct 361 GCCGGTGCGATGGTCGGTTCTTTCGGGTTTGCTGCGTTG 399
> Ahg494667 jgi|Araly1|494667|fgenesh2_kg.8__483__AT5G43340.1
Length=1557
Score = 307 bits (166), Expect = 4e-83
Identities = 202/220 (92%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 181 GCCGTACCGTACCACCATTGGACTTTACCAGCTAACCGGATTGGTTTTGTGATTTTCTAC 240
||| |||||||||| |||||||| ||||| ||||||||||||||||| ||| || |||||
Sbjct 1171 GCCATACCGTACCATCATTGGACCTTACCGGCTAACCGGATTGGTTTCGTGGTTCTCTAC 1230
Query 241 TCTTTCACCTTTTTCTTTTCCAATTTTGGACCTAATGCAACTACGTTCATTGTCCCGGCT 300
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1231 TCTTTCACCTTTTTCTTCTCCAATTTTGGACCTAACGCAACTACTTTCATTGTCCCGGCT 1290
Query 301 GAGATTTTTCCGGCGAGGATTAGGTCGACTTGTCACGGTATCTCCGCGGCGTCAGGTAAA 360
|||||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1291 GAGATTTTTCCGGCGAGGATAAGGTCAACTTGTCACGGTATCTCGGCAGCGTCGGGTAAA 1350
Query 361 GCCGGTGCAATGGTCGGTTCTTTCGGGTTTGCTGCTTTGG 400
||||||| ||||||||||||||||||||| |||||||||
Sbjct 1351 GCCGGTGTGATGGTCGGTTCTTTCGGGTTTTCTGCTTTGG 1390
Score = 161 bits (87), Expect = 3e-39
Identities = 106/115 (92%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 66 GGATAGCTTCACCACCTTTGGATGGTTACCTTCGGCTAAAACCATGAACGCACTCCAGGA 125
||||| |||||||||| | || |||||||||||||||||||||||||||||| |||| ||
Sbjct 960 GGATATCTTCACCACCATCGGTTGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAGA 1019
Query 126 GCTCTTCATGATCGTC-AGGGCTCAAACCATAATCGCTTGTTGCAGTACAGTTCC 179
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 1020 GCTCTTCATGATCG-CTAGGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTCC 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5