BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08900.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1 1749 0.0
Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1 1147 0.0
> Ahg489723 jgi|Araly1|489723|fgenesh2_kg.6__2857__AT4G08900.1
Length=1200
Score = 1749 bits (947), Expect = 0.0
Identities = 1043/1089 (96%), Gaps = 7/1089 (1%)
Strand=Plus/Plus
Query 124 GATCTTCAAGTTCCGATCCAATTTCAGATATGTCGAGGATTATTGGTAGAAA-AGGGATT 182
|||||||||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 1 GATCTTCAAGTTCCGATCCAATTTCAAATATGTCGAAGATTATTGGGA-AAAGAGGGATT 59
Query 183 AACTATATCCATAGACTAAATTCTGCGTCGTTCACGAGCGTATCTGCTTCTTCAATCGAG 242
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 AACTATATCCATAGACTCAATTCTGCGTCGTTCACGAGCGTATCTGCTTCATCAATCGAG 119
Query 243 AAAGGGCAAAATCGCGTGATTGATGCTTCGTTAACTCTTATTCGTGAAAGGGCAAAACTC 302
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 AAAGGGCAAAATCGTGTCATTGATGCTTCGTTAACTCTCATTCGTGAAAGGGCAAAACTA 179
Query 303 AAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTGGTGTA 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 AAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTGGAGTA 239
Query 363 CCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTATTCGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTATTAGA 299
Query 423 GAAGCTATTTGGTGTGGTAGCACAAACTCTGCCACTGAAGAAGGGAAGGAGTTGAAGGAT 482
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GAAGCTATTTGGTGTGGTAGTACAAACTCTGCAACTGAAGAAGGGAAGGAGTTGAAGGAT 359
Query 483 CCACGGGTTCTAACTGATGTTGGGGATGTTCCGGTACAAGAGATTAGAGATTGTGGGGTT 542
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 CCACGGGTTCTAACTGATGTTGGGGATGTTCCAGTACAAGAGATTAGAGATTGTGGGGTT 419
Query 543 GATGATGATAGACTGATGAATGTCATAAGTGAATCTGTGAAGTTGGTGATGGAAGAGGAA 602
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 420 GATGATGATAGACTGATGAATGTAATAAGTGAATCTGTGAAGTTGGTGATGGATGAGGAA 479
Query 603 CCATTGCGTCCGTTGGTCTTAGGTGGAGACCATTCCATATCTTATCCTGTTGTGAGAGCG 662
|||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 CCATTGCGCCCGCTGGTCCTAGGTGGAGACCATTCTATATCTTATCCTGTTGTGAGAGCG 539
Query 663 GTTTCTGAGAAGCTTGGAGGGCCTGTGGACATTCTT-CATCTTGATGCACATCCGGATAT 721
|||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 540 GTTTCTGAGAAGCTTGGAGGACCTGTGGACATT-TTGCATCTTGATGCACATCCGGATAT 598
Query 722 ATATGACTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTATCATGGA 781
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATATGATTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTATCATGGA 658
Query 782 AGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGAAGGACG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGAAGGACG 718
Query 842 GGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCGAAAGATCG 901
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 GGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAAAGATCG 778
Query 902 CCCAATGTTGGAAAATCTGAAATTAGGGGAAGGAGTGAAGGGGGTATACATCTCGATAGA 961
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCAATGTTGGAAAATCTGAAACTAGGGGAAGGAGTGAAGGGGGTATACATCTCGATAGA 838
Query 962 CGTTGACTGTCTCGATCCGGCATTTGCACCTGGAGTGTCGCATATCGAACCAGGAGGTCT 1021
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 839 CGTTGACTGTCTCGATCCGGCATTTGCACCCGGAGTGTCCCACATCGAACCAGGAGGTCT 898
Query 1022 CTCTTTCCGTGACGTCCTTAACATCTTACACAACCTTCAGGCAGATGTTGTCGGGGCTGA 1081
|||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 899 CTCTTTCCGTGATGTCCTTAACATCTTACATAATCTTCAGGCAGATGTTGTTGGGGCTGA 958
Query 1082 CGTTGTCGAGTTCAACCCGCAGCGTGATACTGTTGACGGCATGACAGCAATGGTTGCAGC 1141
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 959 TGTTGTCGAGTTCAACCCGCAACGTGATACTGTTGACGGCATGACAGCAATGGTTGCTGC 1018
Query 1142 TAAGCTTGTTAGAGAATTAGCTGCGAAAATCTCGAAATGAAACAGA-ATGGTA-ATTTTG 1199
||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||| ||
Sbjct 1019 TAAGCTTGTTAGAGAATTAGCCGCGAAAATCTCGAAATGAAACAGATATGTTACATTGTG 1078
Query 1200 GA-GTTTGT 1207
| ||||||
Sbjct 1079 CAAGTTTGT 1087
Score = 176 bits (95), Expect = 4e-43
Identities = 124/137 (91%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 1215 TATGTTTCATCGTGCAAGTTTGTAACATTCATATAGGTTCTTGAATGCAATAAGTCTGGC 1274
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1065 TATGTTACATTGTGCAAGTTTGTAACATTCATATAGGTTCTTGAATGCAATAAGCCTGGC 1124
Query 1275 TCCATAGACGGAGTA-TCAAACAAACATAATATGAATTCTGATCTAAGGCTATAA-AAT- 1331
|||||||| ||| || || |||||| ||||||||||||||||||| ||||| ||| |||
Sbjct 1125 TCCATAGATGGA-TAATCGAACAAAGATAATATGAATTCTGATCTTAGGCTGTAATAATA 1183
Query 1332 -CAATGTTCATATGCCT 1347
||||||||||||||||
Sbjct 1184 TCAATGTTCATATGCCT 1200
> Ahg489781 jgi|Araly1|489781|fgenesh2_kg.6__2915__AT4G08870.1
Length=1234
Score = 1147 bits (621), Expect = 0.0
Identities = 847/955 (89%), Gaps = 19/955 (2%)
Strand=Plus/Plus
Query 238 TCGAGAAAGGGCAAAATCGCGTGATTGATGCTTCGTTAACTCTTATTCGTGAAAGGGCAA 297
|||||| |||||| || || || |||||||||||||||||||| || |||||||||||||
Sbjct 123 TCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAA 182
Query 298 AACTCAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTG 357
|||||||||||||||||||||| || |||| ||||| |||||| ||||| |||||||||
Sbjct 183 AACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTG 242
Query 358 GTGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTA 417
| |||||||||||||||||||||||||||||| |||| || || || |||||||||| |
Sbjct 243 GAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATG 302
Query 418 TTCGAGAAGCTATTTGGTGTGGTAGCACAAACTCTGCCACTGAAGAAGGGAAGGAGTTGA 477
| | |||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 303 TAAGGGAAGCTATTTGGTGTGGTAGCACAAATTCCACCACTGAAGAAGGGAAGGAGCTAA 362
Query 478 AGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCGGTACAAGAGATTAGAG-ATTGT 536
| |||||||||||| ||| ||||||||| ||| ||||||||||||| ||||||| | ||
Sbjct 363 AAGATCCACGGGTTTTAAGTGATGTTGGTGATATTCCGGTACAAGAAATTAGAGAAATG- 421
Query 537 GGGGTTGATGATGATAGACTGATGAATGTCA-TAAGTGAATCTGTGAAGTTGGTGATGGA 595
|||||||||||||||||||| |||||||| | ||||||| ||||||||| ||||||||||
Sbjct 422 GGGGTTGATGATGATAGACTCATGAATGT-AGTAAGTGATTCTGTGAAGCTGGTGATGGA 480
Query 596 AGAGGAACCATTGCGTCCGTTGGTC-TTAGGTGGAGACCATTCCATATCTTATCCTGTTG 654
||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 481 AGAGGAACCATTGCGCCCGCTGGTCATT-GGTGGAGACCATTCCATATCTTATCCTGTTG 539
Query 655 TGAGAGCGGTTTCTGAGAAGCTTGGAGGGCCTGTGGACATTCTTCATCTTGATGCACATC 714
||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||||||||
Sbjct 540 TGAGAGCGGTTTCGGAGAAACTGGGAGGACCCGTGGATATTCTTCATCTTGATGCACATC 599
Query 715 CGGATATATATGACTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTA 774
| |||||||||||| |||| ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 600 CAGATATATATGACCGTTTCGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTA 659
Query 775 TCATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGG 834
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 660 TCATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCGATAAACAAGG 719
Query 835 AAGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCGA 894
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 720 AAGGACGGGAACAAGGCACGAAGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAA 779
Query 895 AAGATCGCCCAATGTTGGAAAATCT-GAAATTAGGGGAAGGAGTGAAGGGGGTATACATC 953
||||||||| |||||||||||| || |||| ||||||||||||||||||| || || |||
Sbjct 780 AAGATCGCCAAATGTTGGAAAA-CTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 838
Query 954 TCGATAGACGTTGACTGTCTCGATCC-GGCATTTGCAC-CTGGAGTGTCGCA-TATCGAA 1010
||||| || ||||||||||||||||| || |||||||| | |||||||| || | |||||
Sbjct 839 TCGATCGATGTTGACTGTCTCGATCCAGG-ATTTGCACAC-GGAGTGTCCCACT-TCGAA 895
Query 1011 CCAGGAGGTCTCTCTTTCCGTGACGTCCTTAACATCTTACACAACCTTCA-GGCAGATGT 1069
||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||| |
Sbjct 896 CCAGGAGGTCTTTCTTTCCGAGACGTCCTTAACATCTTACATAACCTTCAAGG-AGAT-T 953
Query 1070 T-GTCGGGGCTGACGTTGTCGAGTTCAACCCGCAGCGTGATACTGTTGACGGCATGACAG 1128
| || |||||||| ||||| |||| |||||||||||||||||| | ||| | |||||| |
Sbjct 954 TAGTGGGGGCTGATGTTGTTGAGTACAACCCGCAGCGTGATACCGCTGATGACATGACGG 1013
Query 1129 CAATGGTTGCAGCTAAGCTTGTTAGAGAATTAGCTGCGAAAATCTCGAAATGAAA 1183
||||||| || |||||| |||||||||| |||| || ||||| || |||| |||
Sbjct 1014 CAATGGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAAT-AAA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5