BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G08910.1 Length=819 Score E Sequences producing significant alignments: (Bits) Value Ahg942576 jgi|Araly1|942576|scaffold_603120.1 904 0.0 > Ahg942576 jgi|Araly1|942576|scaffold_603120.1 Length=672 Score = 904 bits (489), Expect = 0.0 Identities = 622/685 (91%), Gaps = 14/685 (2%) Strand=Plus/Plus Query 19 TCGTACGTATAAATTTTTCTACGTGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 78 |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 TCGTACGTATAAATATTTCTATATGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 60 Query 79 GTTGCTGAAGAAACCAAAGATCGCTTCGTCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 138 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 GTTGTTGAAGAAACCAAAGATCGCTTCATCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 120 Query 139 AAAAAGAAAGGTTCAAGAATTTTTAGCAAATGATGAGATTTTCAAAAGATCCGACGAATC 198 ||||||||||| ||||||||||||||||||||||||| | ||||||||| | |||||| Sbjct 121 AAAAAGAAAGGGTCAAGAATTTTTAGCAAATGATGAGGTCGTCAAAAGAT-C--CGAATC 177 Query 199 TCAAAACCTTATC-GTTTCTCCCTTTGATCATAAGAGAAGAAGATTCAATGAAGATTCAA 257 |||||| ||| | | || | |||||||| ||||||| ||||| || ||||||||||| Sbjct 178 ACAAAACTTTA-CACATACTTCGTTTGATCAGAAGAGAAAAAGATACAGTGAAGATTCAA 236 Query 258 AAAATATGAATAATAATATAGAAGAAGGATATAATCACCACCACATGAGCCTTGATCTTG 317 ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| Sbjct 237 AAAATGTGAATAATAATATCGAAGAAGGATATAGTCACCACCACATGAGCCTTAATCTTG 296 Query 318 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCATGATCTAAGTAATTACA 377 ||||||||||||||||||||||||||||||||||||||||||| ||| || || | ||| Sbjct 297 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCAAGAT--AATTACT-ACA 353 Query 378 ACAAAGGTTATGAGGAAGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTCGGTGTTGG 437 | || | ||||||||| |||||||||||||||||||||||||||||||||| ||| |||| Sbjct 354 A-AA-G-TTATGAGGACGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTTGGTCTTGG 410 Query 438 GGCTAGAGACAAAGAAAAGCATGTCAAGGGTTGCTTTTGATCTCGATGACGATTGTTGCG 497 |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 411 GGCTAGAGACAAGGAAAAGGATGTCAAGGGTTGCTTTTGATCTCGATGAAGATTGTTGCG 470 Query 498 ACCGCGGTGATGGTGTTGGTGGCAGAAGCGAGGAAGAGATGGTGGCGAGAGTGTGCATGA 557 ||||||||| | |||||| || ||||||||||||||||||| ||||||||||| |||| Sbjct 471 ACCGCGGTG--G-TGTTGGCGGTGGAAGCGAGGAAGAGATGGTTGCGAGAGTGTGTATGA 527 Query 558 AGTGCCATATGTTAGTGATGCTGTGTAAAGCGTCACCGGCTTGCCCTAATTGCAAGTTTA 617 |||| |||||| |||||||| |||||||||| |||||||| ||||||||||||||||||| Sbjct 528 AGTGTCATATGCTAGTGATGTTGTGTAAAGCATCACCGGCGTGCCCTAATTGCAAGTTTA 587 Query 618 TGCATTCACCTGAAGACACCTCTCTCTCACTTCTTTTTACTCCTAAGCCAAGTTTGTCAG 677 ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||| || Sbjct 588 TGCATTCACCTCAAGACACCTCTCTCTCACTTATTTTTACTCCTAAGCCTACTTTGTTAG 647 Query 678 CTTAGTTATTGTTTGGTTTCTAATC 702 |||||||||||||| |||||||||| Sbjct 648 CTTAGTTATTGTTTAGTTTCTAATC 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30269596098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5