BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08910.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942576 jgi|Araly1|942576|scaffold_603120.1 904 0.0
> Ahg942576 jgi|Araly1|942576|scaffold_603120.1
Length=672
Score = 904 bits (489), Expect = 0.0
Identities = 622/685 (91%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 19 TCGTACGTATAAATTTTTCTACGTGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 78
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTACGTATAAATATTTCTATATGATGTTAGAATTTCTAGACAAAGGAAATCTAAACTG 60
Query 79 GTTGCTGAAGAAACCAAAGATCGCTTCGTCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 138
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTTGAAGAAACCAAAGATCGCTTCATCTTATTGCATGGAAGCTGAGGAAGGTTCTAG 120
Query 139 AAAAAGAAAGGTTCAAGAATTTTTAGCAAATGATGAGATTTTCAAAAGATCCGACGAATC 198
||||||||||| ||||||||||||||||||||||||| | ||||||||| | ||||||
Sbjct 121 AAAAAGAAAGGGTCAAGAATTTTTAGCAAATGATGAGGTCGTCAAAAGAT-C--CGAATC 177
Query 199 TCAAAACCTTATC-GTTTCTCCCTTTGATCATAAGAGAAGAAGATTCAATGAAGATTCAA 257
|||||| ||| | | || | |||||||| ||||||| ||||| || |||||||||||
Sbjct 178 ACAAAACTTTA-CACATACTTCGTTTGATCAGAAGAGAAAAAGATACAGTGAAGATTCAA 236
Query 258 AAAATATGAATAATAATATAGAAGAAGGATATAATCACCACCACATGAGCCTTGATCTTG 317
||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 237 AAAATGTGAATAATAATATCGAAGAAGGATATAGTCACCACCACATGAGCCTTAATCTTG 296
Query 318 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCATGATCTAAGTAATTACA 377
||||||||||||||||||||||||||||||||||||||||||| ||| || || | |||
Sbjct 297 AACTCAACTTGTCACCATCTCTCATCGATCTAAATCATCATCAAGAT--AATTACT-ACA 353
Query 378 ACAAAGGTTATGAGGAAGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTCGGTGTTGG 437
| || | ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 354 A-AA-G-TTATGAGGACGATGAAAGGAAGAAGAAGATGATGGAGAAGGGTTTGGTCTTGG 410
Query 438 GGCTAGAGACAAAGAAAAGCATGTCAAGGGTTGCTTTTGATCTCGATGACGATTGTTGCG 497
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 411 GGCTAGAGACAAGGAAAAGGATGTCAAGGGTTGCTTTTGATCTCGATGAAGATTGTTGCG 470
Query 498 ACCGCGGTGATGGTGTTGGTGGCAGAAGCGAGGAAGAGATGGTGGCGAGAGTGTGCATGA 557
||||||||| | |||||| || ||||||||||||||||||| ||||||||||| ||||
Sbjct 471 ACCGCGGTG--G-TGTTGGCGGTGGAAGCGAGGAAGAGATGGTTGCGAGAGTGTGTATGA 527
Query 558 AGTGCCATATGTTAGTGATGCTGTGTAAAGCGTCACCGGCTTGCCCTAATTGCAAGTTTA 617
|||| |||||| |||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 528 AGTGTCATATGCTAGTGATGTTGTGTAAAGCATCACCGGCGTGCCCTAATTGCAAGTTTA 587
Query 618 TGCATTCACCTGAAGACACCTCTCTCTCACTTCTTTTTACTCCTAAGCCAAGTTTGTCAG 677
||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||| ||
Sbjct 588 TGCATTCACCTCAAGACACCTCTCTCTCACTTATTTTTACTCCTAAGCCTACTTTGTTAG 647
Query 678 CTTAGTTATTGTTTGGTTTCTAATC 702
|||||||||||||| ||||||||||
Sbjct 648 CTTAGTTATTGTTTAGTTTCTAATC 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5